DY258756

Overview
NameDY258756
Unique NameDY258756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length912
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY258756 vs. ExPASy Swiss-Prot
Match: F16PA_GEOLS (Fructose-1,6-bisphosphatase class 1 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) GN=fbp PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.620e-11
Identity = 42/114 (36.84%), Postives = 61/114 (53.51%), Query Frame = 2 
Query:  296 IDAELTIVLSSISTACKQIASLVQRAAISNLTGIQGAVNVQGEDQKKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIFGIY 637
            I   L  +L  I+ A K + + V+   +    G+ G  N+ GE+Q  LDV+S+ +    L  SG    IASEE D    V  +  G + V +DPLDGSS +D  ++ G+I GIY
Sbjct:   23 ISGNLVHLLCEIAEASKYVINAVRTGDL----GVAGTSNLYGEEQLALDVLSDRILRKRLMYSGVVCNIASEEMDEIFQVTSNPLGMFSVAYDPLDGSSLVDVNLAVGTIVGIY 132
[Close]
BLAST of DY258756 vs. ExPASy Swiss-Prot
Match: F16PA_BRASO (Fructose-1,6-bisphosphatase class 1 OS=Bradyrhizobium sp. (strain ORS278) GN=fbp PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.620e-11
Identity = 40/112 (35.71%), Postives = 62/112 (55.36%), Query Frame = 2 
Query:  299 DAELTIVLSSISTACKQIASLVQRAAISNLTGIQGAVNVQGEDQKKLDVVSNEVFSNCLRSSGRTGIIASEEEDVPVAVEESYSGNYIVVFDPLDGSSNIDAAVSTGSIFGI 634
            DA+   V+ +++ A +++A  +  A +S +      VN  G+ QK LD+V++ +    LR +   GI+ SEE D P  V E  +    V  DPLDGSSN+   +S G+IF I
Sbjct:   32 DADCAAVIEALADAARELARQIAIAPLSGIDEGAATVNTDGDIQKALDIVADNLMREALRRAPVAGIL-SEEGDRPETVNE--AAPLCVAIDPLDGSSNLQNNISVGTIFSI 140
The following BLAST results are available for this feature:
BLAST of DY258756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 322
Match NameE-valueIdentityDescription
F16PA_GEOLS7.620e-1136.84Fructose-1,6-bisphosphatase class 1 OS=Geobacter l... [more]
F16PA_BRASO7.620e-1135.71Fructose-1,6-bisphosphatase class 1 OS=Bradyrhizob... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3BC10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258756 ID=DY258756; Name=DY258756; organism=Citrus clementina; type=EST; length=912bp
CAGAAAGCAGAGGGCCAAAATGGTTGCAGCAGCAGCGACAGCATCATCAC
AGCTTCTCTTTTCAAGCTCTCACTCTTTCTCTCGGCTCTCTCCTTACCAA
ATATGTGTCTTCGACTCCAAAGCACTCGTGTCGTCATGTCCCAGCAACGT
TTTGAAGAGAAGACATGTTGGTGTTGCTGCTGGGGTTCGGTGCATGGCTG
TTGGGACAACATCGGAGGTTGCAACCAAGAAGAGAAGTTCGTATGAGATT
GAAACGCTGACAAACTGGCTGTTGAAGCAAGAACAGTCTGGCGTTATTGA
TGCTGAGCTCACTATTGTGCTTTCCAGCATTTCAACGGCGTGCAAGCAGA
TTGCTTCTTTGGTGCAAAGAGCTGCCATTTCCAACTTGACTGGAATTCAG
GGTGCTGTCAATGTTCAAGGCGAGGACCAGAAGAAGCTCGACGTCGTTTC
AAATGAGGTGTTCTCAAACTGTTTGAGATCAAGTGGGCGAACCGGGATTA
TAGCGTCAGAGGAAGAGGATGTACCAGTGGCGGTAGAAGAGAGCTACTCT
GGAAACTATATTGTAGTTTTTGATCCACTTGATGGATCATCCAACATTGA
TGCTGCAGTGTCTACTGGATCCATCTTTGGCATATACAGCCCAAATGATG
AGTGTCTTGCCGATATTGGTGATGATCCTACTGTGAGTTTCATGCTTCTG
TCATTTCATTGTAATACTAAACAGAAAAATGAAGTCTGATAGTAAATTAC
TTCCATTTTTTTCAATTTTGATACATTGCAGCTGGGCAACACTGAACTAA
GGTGTGTAGTGAACGTGTGCCAGCCCGGAAGCAACCTTCTTGCTGCAAGC
TATTGCATGTATTCAAGCTCTGTAATCTTTGTGATAACTTTAGGCAACGG
GTCCTTTGCATC
back to top