DY258757

Overview
NameDY258757
Unique NameDY258757
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length791
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY258757_ssr84 microsatellite DY258757_ssr84:84..95. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14845 contig Ccv1_Contig14845:549..1339. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.217e-19
Identity = 49/130 (37.69%), Postives = 76/130 (58.46%), Query Frame = 3
Query:    3 SVEDVEAAAQQFNGYELEGRPLRVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXNRVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVA 392
            SVE+ + A + F+G ++ GR ++VN                            +++YV NLSW +    L   F +Q   + AKV+YDR SGRSRGFGF+T+SSAE +++A+D++N V+L GR +R++VA
Sbjct:  164 SVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVA 293          
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: GRP1_SINAL (Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.916e-18
Identity = 41/79 (51.90%), Postives = 60/79 (75.95%), Query Frame = 3
Query:  165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 401
            R +VG L+W  DD ALET F + G+VL++K++ DRE+GRSRGFGFVT+   + + +AI+ +NG DL GR+I V+ A++R
Sbjct:    9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87          
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: GRP7_ARATH (Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=GRP7 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.488e-17
Identity = 40/79 (50.63%), Postives = 59/79 (74.68%), Query Frame = 3
Query:  165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 401
            R +VG L+W  DD ALET F + G V+++K++ DRE+GRSRGFGFVT+   + + +AI+ +NG DL GR+I V+ A++R
Sbjct:    9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSR 87          
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: GRP_HORVU (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare GN=blt801 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.149e-16
Identity = 39/79 (49.37%), Postives = 58/79 (73.42%), Query Frame = 3
Query:  165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 401
            R +VG L W  DD +L+  F + G V+++K++ DRE+GRSRGFGFVT++S E +  AI+++NG DL GR I V+ A++R
Sbjct:    7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAMNGQDLDGRNITVNEAQSR 85          
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: GRP2_SINAL (Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.149e-16
Identity = 37/79 (46.84%), Postives = 60/79 (75.95%), Query Frame = 3
Query:  165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 401
            R +VG L+W  D+ +LET F + G+++++K++ DRE+GRSRGFGFVT+   + + +AI+ +NG DL GR+I V+ A++R
Sbjct:    9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSR 87          
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: GRP10_BRANA (Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.393e-15
Identity = 37/79 (46.84%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 401
            R +VG L+W   D  LE  F + G+V+++K++ DRE+GRSRGFGFVT+   + + +AID +NG +L GR I V+ A++R
Sbjct:    7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSR 85          
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: GRPA_MAIZE (Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea mays GN=RAB15 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.376e-15
Identity = 38/79 (48.10%), Postives = 58/79 (73.42%), Query Frame = 3
Query:  165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 401
            R +VG L+W   + +LE  F   G++L++KV+ DRE+GRSRGFGFVT+SS   + +AI+++NG +L GR I V+ A++R
Sbjct:    9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSR 87          
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: GRP2_SORBI (Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.053e-15
Identity = 38/79 (48.10%), Postives = 59/79 (74.68%), Query Frame = 3
Query:  165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 401
            R +VG L+W  ++  LE  F   G+V+++KV+ DRE+GRSRGFGFVT+SS + + +AI+++NG +L GR I V+ A++R
Sbjct:    9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSR 87          
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: GRP2_ARATH (Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana GN=GRP2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.913e-15
Identity = 38/80 (47.50%), Postives = 53/80 (66.25%), Query Frame = 3
Query:  165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEARP 404
            ++++G LSWG DD +L   F   G V++AKV+ DRE+GRSRGFGFV ++       AI  ++G +L GR IRV+ A  RP
Sbjct:   36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 115          
BLAST of DY258757 vs. ExPASy Swiss-Prot
Match: GRP8_ARATH (Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=GRP8 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.540e-14
Identity = 36/79 (45.57%), Postives = 56/79 (70.89%), Query Frame = 3
Query:  165 RVYVGNLSWGVDDLALETLFREQGKVLEAKVVYDRESGRSRGFGFVTYSSAEEVDNAIDSLNGVDLAGRAIRVSVAEAR 401
            R +VG L+W  +D  L+  F + G V+++K++ DRESGRSRGFGFVT+   + + +AI+ +NG +L GR I V+ A++R
Sbjct:    7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSR 85          
The following BLAST results are available for this feature:
BLAST of DY258757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
ROC5_NICSY1.217e-1937.6933 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
GRP1_SINAL3.916e-1851.90Glycine-rich RNA-binding protein GRP1A OS=Sinapis ... [more]
GRP7_ARATH1.488e-1750.63Glycine-rich RNA-binding protein 7 OS=Arabidopsis ... [more]
GRP_HORVU2.149e-1649.37Glycine-rich RNA-binding protein blt801 OS=Hordeum... [more]
GRP2_SINAL2.149e-1646.84Glycine-rich RNA-binding protein GRP2A OS=Sinapis ... [more]
GRP10_BRANA1.393e-1546.84Glycine-rich RNA-binding protein 10 OS=Brassica na... [more]
GRPA_MAIZE2.376e-1548.10Glycine-rich RNA-binding, abscisic acid-inducible ... [more]
GRP2_SORBI4.053e-1548.10Glycine-rich RNA-binding protein 2 OS=Sorghum bico... [more]
GRP2_ARATH6.913e-1547.50Glycine-rich RNA-binding protein 2, mitochondrial ... [more]
GRP8_ARATH1.540e-1445.57Glycine-rich RNA-binding protein 8 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BC11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258757 ID=DY258757; Name=DY258757; organism=Citrus clementina; type=EST; length=791bp
CAAGTGTTGAGGATGTTGAAGCAGCTGCTCAGCAGTTCAATGGCTATGAA
CTCGAGGGCCGACCCCTGAGGGTGAACTCTGGACCTCCTCCTCCTAGGAG
GGAAGAATTCTCTCCCAGAGGGCCCAGAGGAGGTGGTGCTGGTGCGCCTT
CTAGTGGTGGCAACCGTGTTTATGTTGGTAACCTTTCATGGGGTGTTGAT
GATTTAGCTCTTGAGACTTTGTTTCGTGAGCAAGGGAAGGTTTTGGAAGC
CAAAGTGGTATATGACAGGGAGAGTGGTAGATCGCGGGGTTTCGGGTTTG
TGACTTACAGTTCTGCTGAAGAGGTTGACAATGCAATTGATTCCTTGAAT
GGTGTAGATTTGGCCGGTAGAGCAATTCGAGTCTCGGTGGCTGAAGCAAG
GCCACAAAGGCGTCAATTTTGAGCTGTGGCAGAAACTAGTTTTCAGTTGT
TTTGATTTTATCGTTAGTTATTTGTGTTGTTATAAGGCTGCTTATCAGTG
CTATCAAATCATCGGCTTCAAAGACAGATTCATGATTATTTGTTTTTGCA
TATGCGAAATGCATGTTGCCTTGTTATAATTTCTAACTATCATCATGAGC
CACAGAAATTTTGGAGCTGCATTATTCAGAACAGGATCCTTGCATCTGGC
ATTTTGATAATTCCATCTCTGTGACGCTTGCCAGATGAAGGGTAGCTTGA
GTTGTCTGTCACTAAGTTTTCATCCATGTTCTGAAAACTATAATTGAGAC
AAGAAATGAATATGTAGCCTGAAATTTGACTTGATTTTACA
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