DY258758

Overview
NameDY258758
Unique NameDY258758
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1152
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1228 contig Ccv1_Contig1228:1..1152. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258758 vs. ExPASy Swiss-Prot
Match: Y1339_STAAS (Uncharacterized hydrolase SAS1339 OS=Staphylococcus aureus (strain MSSA476) GN=SAS1339 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 8.408e-24
Identity = 70/190 (36.84%), Postives = 105/190 (55.26%), Query Frame = 1
Query:  130 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKD--KLEGTVRILFQPAEEGGAGAFHMIKEGALG--DSEAIFGMHIDVGIPTGSIASISGPHLAATSV-FNVKVEGRGGHAA 684
            +++   RR +H++PEL   E  T+A I+  LD L I Y  P+ +TG++A +       +A RAD+DALP+ E  +  ++S+ D  MHACGHD HTT L+   +     +D  +L   V  +FQPAEE G GA  +IK GA      EA+FG+H++     G IA I    + A++  +   + G   H A
Sbjct:    5 EFVTKHRRHLHQHPELSLHEFETTAYIKAFLDSLNIKYDCPL-ETGVIAYLEGNGSHTIAYRADIDALPILEENDVPYRSQSDHVMHACGHDGHTTALMLFVQRCKDMQDAGQLPQNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGIHVNPFADEG-IAVIRDEEITASATEYRFFLTGLSSHVA 192          
BLAST of DY258758 vs. ExPASy Swiss-Prot
Match: Y1291_STAA3 (Uncharacterized hydrolase SAUSA300_1291 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_1291 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 8.408e-24
Identity = 70/190 (36.84%), Postives = 105/190 (55.26%), Query Frame = 1
Query:  130 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKD--KLEGTVRILFQPAEEGGAGAFHMIKEGALG--DSEAIFGMHIDVGIPTGSIASISGPHLAATSV-FNVKVEGRGGHAA 684
            +++   RR +H++PEL   E  T+A I+  LD L I Y  P+ +TG++A +       +A RAD+DALP+ E  +  ++S+ D  MHACGHD HTT L+   +     +D  +L   V  +FQPAEE G GA  +IK GA      EA+FG+H++     G IA I    + A++  +   + G   H A
Sbjct:    5 EFVTKHRRHLHQHPELSLHEFETTAYIKAFLDSLNIKYDCPL-ETGVIAYLEGNGSHTIAYRADIDALPILEENDVPYRSQSDHVMHACGHDGHTTALMLFVQRCKDMQDAGQLPQNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGIHVNPFADEG-IAVIRDEEITASATEYRFFLTGLSSHVA 192          
BLAST of DY258758 vs. ExPASy Swiss-Prot
Match: Y1286_STAAW (Uncharacterized hydrolase MW1286 OS=Staphylococcus aureus (strain MW2) GN=MW1286 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 8.408e-24
Identity = 70/190 (36.84%), Postives = 105/190 (55.26%), Query Frame = 1
Query:  130 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKD--KLEGTVRILFQPAEEGGAGAFHMIKEGALG--DSEAIFGMHIDVGIPTGSIASISGPHLAATSV-FNVKVEGRGGHAA 684
            +++   RR +H++PEL   E  T+A I+  LD L I Y  P+ +TG++A +       +A RAD+DALP+ E  +  ++S+ D  MHACGHD HTT L+   +     +D  +L   V  +FQPAEE G GA  +IK GA      EA+FG+H++     G IA I    + A++  +   + G   H A
Sbjct:    5 EFVTKHRRHLHQHPELSLHEFETTAYIKAFLDSLNIKYDCPL-ETGVIAYLEGNGSHTIAYRADIDALPILEENDVPYRSQSDHVMHACGHDGHTTALMLFVQRCKDMQDAGQLPQNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGIHVNPFADEG-IAVIRDEEITASATEYRFFLTGLSSHVA 192          
BLAST of DY258758 vs. ExPASy Swiss-Prot
Match: Y1253_STAAB (Uncharacterized hydrolase SAB1253 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB1253 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 8.408e-24
Identity = 70/190 (36.84%), Postives = 105/190 (55.26%), Query Frame = 1
Query:  130 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKD--KLEGTVRILFQPAEEGGAGAFHMIKEGALG--DSEAIFGMHIDVGIPTGSIASISGPHLAATSV-FNVKVEGRGGHAA 684
            +++   RR +H++PEL   E  T+A I+  LD L I Y  P+ +TG++A +       +A RAD+DALP+ E  +  ++S+ D  MHACGHD HTT L+   +     +D  +L   V  +FQPAEE G GA  +IK GA      EA+FG+H++     G IA I    + A++  +   + G   H A
Sbjct:    5 EFVTKHRRHLHQHPELSLHEFETTAYIKAFLDSLNIKYDCPL-ETGVIAYLEGNDSHTIAYRADIDALPILEENDVPYRSQSDHVMHACGHDGHTTALMLFVQRCKDMQDSGQLPQNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGIHVNPFADEG-IAVIRDEEITASATEYRFFLTGLSSHVA 192          
BLAST of DY258758 vs. ExPASy Swiss-Prot
Match: ABGA_ECOLI (Aminobenzoyl-glutamate utilization protein A OS=Escherichia coli (strain K12) GN=abgA PE=1 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 7.118e-23
Identity = 66/172 (38.37%), Postives = 91/172 (52.91%), Query Frame = 1
Query:  262 TGIVAQIGSGSR-PVVALRADMDALPLQELVEWEHKSKIDG-------KMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHA-AMPHSTIDPILTASSVILALQQL 750
            TGIVA + +G   PV+A R DMDAL L E  +  H+   DG        MHACGHD HT + LG A  L Q +  L G ++++FQPAEEG  GA  M+  G + D +    +HI  G+P G++      +  AT+ F+    G   HA A P    + +L A+   LAL  +
Sbjct:   96 TGIVATLDTGRPGPVMAFRVDMDALDLSEEQDVSHRPYRDGFASCNAGMMHACGHDGHTAIGLGLAHTLKQFESGLHGVIKLIFQPAEEGTRGARAMVDAGVVDDVDYFTAVHIGTGVPAGTVV-CGSDNFMATTKFDAHFTGTAAHAGAKPEDGHNALLAAAQATLALHAI 266          
BLAST of DY258758 vs. ExPASy Swiss-Prot
Match: IAAH_ENTAG (Indole-3-acetyl-aspartic acid hydrolase OS=Enterobacter agglomerans GN=iaaH PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 9.296e-23
Identity = 65/177 (36.72%), Postives = 92/177 (51.98%), Query Frame = 1
Query:  262 TGIVAQIGSGSR-PVVALRADMDALPLQELVEWEHK-------SKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHA-AMPHSTIDPILTASSVILALQQLISREA 765
            TGIVA + +G   P +A R DMDAL L E  +  H+       S   G MHACGHD HT + LG A +L Q  D+L G ++++FQPAEEG  GA  M+  G + D +    +HI  G+P G++      +  AT+ F+    G   HA   P    + +L A+   +AL  +    A
Sbjct:   96 TGIVATLDTGRPGPTLAFRVDMDALDLNEDTDGHHRPFREDFASCNPGMMHACGHDGHTAIGLGLAHVLKQYADRLHGVIKLIFQPAEEGTRGARAMVAAGVVDDVDYFTAIHIGTGVPAGTVV-CGSDNFMATTKFDALFTGVAAHAGGKPEDGRNALLAAAQAAIALHAIAPHSA 271          
BLAST of DY258758 vs. ExPASy Swiss-Prot
Match: ABGA_HAEIN (Aminobenzoyl-glutamate utilization protein A homolog OS=Haemophilus influenzae GN=abgA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 3.655e-19
Identity = 64/170 (37.65%), Postives = 92/170 (54.12%), Query Frame = 1
Query:  262 TGIVAQIGSGSR-PVVALRADMDALPLQELVEWEH-------KSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGP-HLAATSVFNVKVEGRGGHA-AMPHSTIDPILTASSVILAL 741
            TG VA   SG     +ALR D+D + + E    EH        S  DG MHACGHD H T+ LG A  + Q KDKL G V+I+FQPAEEG  GA  + + G + D++     HI     TG++  I+ P +  +T+  +++ +G+  HA A PH   + +L A+  +  L
Sbjct:   88 TGCVALFDSGKPGKTIALRFDIDCVNVTETRSPEHIPNKEGFASINDGFMHACGHDSHITIGLGVALWIAQNKDKLTGKVKIVFQPAEEGVRGAAAIAQSGIIDDADYFASSHISFCANTGTV--IANPRNFLSTTKIDIRYKGKPAHAGAAPHLGRNALLAAAHTVTQL 255          
The following BLAST results are available for this feature:
BLAST of DY258758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
Y1339_STAAS8.408e-2436.84Uncharacterized hydrolase SAS1339 OS=Staphylococcu... [more]
Y1291_STAA38.408e-2436.84Uncharacterized hydrolase SAUSA300_1291 OS=Staphyl... [more]
Y1286_STAAW8.408e-2436.84Uncharacterized hydrolase MW1286 OS=Staphylococcus... [more]
Y1253_STAAB8.408e-2436.84Uncharacterized hydrolase SAB1253 OS=Staphylococcu... [more]
ABGA_ECOLI7.118e-2338.37Aminobenzoyl-glutamate utilization protein A OS=Es... [more]
IAAH_ENTAG9.296e-2336.72Indole-3-acetyl-aspartic acid hydrolase OS=Enterob... [more]
ABGA_HAEIN3.655e-1937.65Aminobenzoyl-glutamate utilization protein A homol... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3BC12FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258758 ID=DY258758; Name=DY258758; organism=Citrus clementina; type=EST; length=1152bp
CAACGGATTGTCTTTGAGATGGCGATTGCCTTTTTGCTTCTTCTACTACC
GATCACTTATCTCACTACGACCACAGCAGTTGATGAAATACTTACAAATC
AAGTTATGATATCAGCTCAACAAGATAAAGATTGGCTAGTCTCTGTAAGA
AGACAAATCCATGAAAACCCGGAACTGCTATTCGAAGAACACAACACAAG
TGCCCTCATTCGCAGAGAACTTGATAAACTTGGAATCCCTTATGCATACC
CAGTCGCCAAAACAGGCATTGTAGCACAGATTGGCTCTGGTTCTCGCCCT
GTCGTCGCGTTGAGAGCTGACATGGATGCTCTCCCTTTGCAAGAGCTCGT
GGAATGGGAGCATAAGAGCAAAATTGATGGCAAAATGCACGCATGTGGAC
ATGACGTCCACACCACCATGCTTCTTGGTGCTGCCAAGTTGCTTCATCAA
CGTAAAGATAAACTTGAGGGAACTGTGAGAATTCTTTTCCAACCTGCTGA
GGAGGGAGGTGCAGGTGCCTTTCACATGATAAAAGAAGGCGCTCTTGGTG
ACTCTGAAGCAATATTTGGAATGCATATTGACGTAGGAATACCTACAGGA
AGTATAGCATCAATTTCTGGGCCACACTTGGCTGCTACATCCGTTTTTAA
TGTTAAAGTAGAGGGAAGAGGCGGACATGCTGCAATGCCCCATTCAACAA
TCGATCCTATACTTACTGCTTCATCTGTGATATTGGCATTGCAGCAACTT
ATTTCAAGAGAAGCAGATCCCCTCCAAAGTCTAGAATGTCTCAATCTCCT
TTTAATCATTTAATTCGAAAACCTGTGGAACTTTTGCCATTGAAAGCCAT
GAAGAATTCTCCATTTCCCCTTCTTAATAATTTTTACTGGGAATTTTAAC
TGGCTGAATGAATTGGCAAAAAAAAACTTGGAAGTGGAAATATTCATTGT
GGGAACTTAATAATTAATTTGGTCTTTGGGCTGAAAGGGGGTGGTCTGGT
TAATTTTTTGTTAAAAGGGGGGAAACCGCAATTTTAAATAAAATTTCCCC
CCGTTTTGGTTGAAATTTTGGGAGGCCCTTTTTGGGGGGGAGCCTTTAAA
AACGGGGAGGGGGTTTGTGATTCAAACCTCCCCAAAAAAAAGGGTGGAGA
AG
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