DY258810

Overview
NameDY258810
Unique NameDY258810
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1160
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY258810 vs. ExPASy Swiss-Prot
Match: ATPA_LEMMI (ATP synthase subunit alpha, chloroplastic OS=Lemna minor GN=atpA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.297e-11
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 3 
Query:    3 DSLYIGQVRKFLVELRTYLKTNKPQFREIISSTKIFTE*SKALLR 137
            DSL +GQVRKFLV+LRTYLK NKPQF+EIISSTK FT  ++ALL+
Sbjct:  447 DSLEVGQVRKFLVQLRTYLKKNKPQFQEIISSTKTFTPEAEALLK 491
[Close]
BLAST of DY258810 vs. ExPASy Swiss-Prot
Match: ATPA_PIPCE (ATP synthase subunit alpha, chloroplastic OS=Piper cenocladum GN=atpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.224e-11
Identity = 33/45 (73.33%), Postives = 41/45 (91.11%), Query Frame = 3 
Query:    3 DSLYIGQVRKFLVELRTYLKTNKPQFREIISSTKIFTE*SKALLR 137
            D L  GQV+KFLV+LRTYLKTNKPQF+EIISSTKIFT+ ++A+L+
Sbjct:  447 DPLETGQVKKFLVQLRTYLKTNKPQFQEIISSTKIFTKDAEAILK 491
[Close]
BLAST of DY258810 vs. ExPASy Swiss-Prot
Match: ATPA_LIRTU (ATP synthase subunit alpha, chloroplastic OS=Liriodendron tulipifera GN=atpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.224e-11
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 3 
Query:    3 DSLYIGQVRKFLVELRTYLKTNKPQFREIISSTKIFTE*SKALLR 137
            D L IGQV+KFLV+LRTYLKTNKPQ +EIISSTK FTE ++ALL+
Sbjct:  447 DPLEIGQVKKFLVQLRTYLKTNKPQLQEIISSTKTFTEQAEALLK 491
[Close]
BLAST of DY258810 vs. ExPASy Swiss-Prot
Match: ATPA_DRIGR (ATP synthase subunit alpha, chloroplastic OS=Drimys granadensis GN=atpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.224e-11
Identity = 34/45 (75.56%), Postives = 41/45 (91.11%), Query Frame = 3 
Query:    3 DSLYIGQVRKFLVELRTYLKTNKPQFREIISSTKIFTE*SKALLR 137
            D L IGQV+KFLV+LRT+LKTNKPQF+EIISSTK FTE ++ALL+
Sbjct:  447 DPLDIGQVKKFLVQLRTHLKTNKPQFQEIISSTKTFTEQAEALLK 491
[Close]
BLAST of DY258810 vs. ExPASy Swiss-Prot
Match: ATPA_COFAR (ATP synthase subunit alpha, chloroplastic OS=Coffea arabica GN=atpA PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.224e-11
Identity = 34/45 (75.56%), Postives = 40/45 (88.89%), Query Frame = 3 
Query:    3 DSLYIGQVRKFLVELRTYLKTNKPQFREIISSTKIFTE*SKALLR 137
            DSL IGQVRKFLV LR Y+KTNKPQF+EIISSTK FTE +++LL+
Sbjct:  447 DSLEIGQVRKFLVALRAYVKTNKPQFQEIISSTKTFTEEAESLLK 491
The following BLAST results are available for this feature:
BLAST of DY258810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
ATPA_LEMMI6.297e-1175.56ATP synthase subunit alpha, chloroplastic OS=Lemna... [more]
ATPA_PIPCE8.224e-1173.33ATP synthase subunit alpha, chloroplastic OS=Piper... [more]
ATPA_LIRTU8.224e-1175.56ATP synthase subunit alpha, chloroplastic OS=Lirio... [more]
ATPA_DRIGR8.224e-1175.56ATP synthase subunit alpha, chloroplastic OS=Drimy... [more]
ATPA_COFAR8.224e-1175.56ATP synthase subunit alpha, chloroplastic OS=Coffe... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CC07FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258810 ID=DY258810; Name=DY258810; organism=Citrus clementina; type=EST; length=1160bp
TTGATTCATTATATATTGGTCAAGTAAGAAAATTTCTCGTTGAGCTACGT
ACTTACTTAAAAACGAATAAACCTCAGTTCCGAGAGATAATATCTTCTAC
CAAGATATTCACCGAATAATCAAAGGCGCTTTTGCGAGAGTCTATTCAGG
AACTCAAGGAAAGTTTGCTACTGAAAGAACAATTATAGATACCACATCAG
TCTTAGTCATACTTTATAATAGATAGGAATATAGACAAAAAAAAAGGGCC
TACCTCTGTTCCTGGTCCAAAGTGGGCTCCTTCACAGCGCAGTGCTGATC
GTGTTGTGGCATCGCCTCGGGCACAATCAGATCCAGTACAATGGATACTC
CTCTGCAAATTGCAAGCTGAACTACCAATGGCAAGGAGGCATTCCCTTCG
GCGATTTGTCGAGAAGCGACGTGACAGGCTGGTGAGCAAGAATCCATATC
CTGTTCAATCAAAGGCAAAAGCTTCTGACGCCAATGCTCAGACTCCTGCC
GAGGCAGGTTGCTTTGATAATACTTCCGTGCCTCAGGAAGAATTGCAACC
TACCGCTGCAGCCCATGTTGCATAAATTACCTATCATGCTTAGATGTTTG
TAGTAGATAATCCAGAACTATCTACTTAGATAAACTAGACATTGCTGTAT
TGTTTGTGGGGAAAAACCCAAGCGCACAGGGTGTGATGATGTTTGAATTG
CTTTTGGAATTTGGAGGAATGCCACGGGTTACACTTCTCATTGGCCGGTA
CCCAACAAAAAAAAAAAATTTCGTGTGTAGGGTGCTTCCACCCCGAGGAT
TGCACCTTTTAAATCGGCAATGAAGTAATTAGCTGAAATTTTTAGGCTTG
TCGAATACAACAACAATTGAAATGTCCGGGACCCAACTGGGAGCGTCAAA
TTGTAAGCAACTGATACTGCTGGGCACACCCGGCCGGGCACAAGCTAAAC
ATTCCACCCCTCTTTGGCACTTTGAACCAGCACCAAATTAACAGCAAAAG
ATGGAGCAAGCCATCGATATGCTCTGCCCACAGAAGCAAAAAACGAATTG
CAACTCTACTCAGATAACGGGATGGAAAGAAGAAGGGTGACTATCTCGGT
CGGGAGAGAGAGACAGAAATGCATCCCTCATCGGCCTCTCACGCCAATAG
GACTCCCCCC
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