DY258811

Overview
NameDY258811
Unique NameDY258811
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: TCPA_BOVIN (T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.690e-14
Identity = 45/129 (34.88%), Postives = 74/129 (57.36%), Query Frame = 3
Query:    3 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKH----ALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            ++ +VV GGGA++  +S YL   + ++  + Q  I  +A++L VIP  L  NA  D+TD++ KLR  H      P  +   + G+D+  G   D+    V+EP +VK+ ++  ATEAA  IL +D+ +K
Sbjct:  404 ESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLPVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 532          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: THSA_THEK1 (Thermosome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=thsA PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 41/123 (33.33%), Postives = 71/123 (57.72%), Query Frame = 3
Query:    3 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            ++  V+  GGA ++E++  L + ++ + GK    I ++A AL++IP+ L +NAG D  ++L K+  +H      G   G+D+  G  AD     + EP  VK  AI +A+EAA +IL +D+ +
Sbjct:  403 EDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEH---KNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 522          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: THSA_PYRKO (Thermosome subunit alpha OS=Pyrococcus kodakaraensis GN=thsA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.737e-14
Identity = 41/123 (33.33%), Postives = 71/123 (57.72%), Query Frame = 3
Query:    3 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            ++  V+  GGA ++E++  L + ++ + GK    I ++A AL++IP+ L +NAG D  ++L K+  +H      G   G+D+  G  AD     + EP  VK  AI +A+EAA +IL +D+ +
Sbjct:  403 EDGAVLPAGGAPEIELAIRLDEYAKQVGGKEALAIENFADALKIIPKTLAENAGLDTVEMLVKVISEH---KNRGLGIGIDVFEGKPADMLEKGIIEPLRVKKQAIKSASEAAIMILRIDDVI 522          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: TCPG_THAWE (T-complex protein 1 subunit gamma OS=Thalassiosira weissflogii PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 47/133 (35.34%), Postives = 66/133 (49.62%), Query Frame = 3
Query:   15 VVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP------TGEGA----PYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            ++ GGGA +M +S  LR+    + G  Q    +   A+EVIPR L  N G      + +LR KHA        +G G      +G+D  TG + D     VWEP  VK+  I  A E+AC+IL +D+ V   K
Sbjct:  422 LLPGGGATEMAVSVGLRKAGLKLEGIQQGPFLAVGDAMEVIPRTLAQNCGVSVIRTVTQLRAKHAAAYEDSETSGNGTFPKCNWGIDGTTGKLVDMEEFGVWEPFSVKVQTIKTAVESACMILRIDDIVSGSK 554          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: TCPA_CRIGR (T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.141e-13
Identity = 45/129 (34.88%), Postives = 74/129 (57.36%), Query Frame = 3
Query:    3 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKH----ALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            ++ +VV GGGA++  +S YL   + ++  + Q  I  +A++L VIP  L  NA  D+TD++ KLR  H      P  +   + G+D+  G   D+    V+EP +VK+ ++  ATEAA  IL +D+ +K
Sbjct:  404 ESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLINGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 532          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: TCPA_SCHMA (T-complex protein 1 subunit alpha OS=Schistosoma mansoni GN=TCP-1A PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.490e-13
Identity = 44/131 (33.59%), Postives = 74/131 (56.49%), Query Frame = 3
Query:    3 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAP-------YGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            ++  +V G GA +  +S YL   +  ++ + Q  I  +A+A+  IP+QL  NAG D+T+++ +LR  H   + +  P       +G+D+N   +AD     V+EP V KI ++  ATEAA  IL +D+ +K
Sbjct:  401 ESKRIVPGAGACETAVSIYLENYALTLSSREQLAIAEFARAMLSIPKQLAVNAGVDSTELVARLRSCH--NSSQSKPDQAHNKWWGLDLNNQYVADCKEIGVFEPLVSKIKSLKFATEAAITILRIDDLIK 529          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: TCPA_MONDO (T-complex protein 1 subunit alpha OS=Monodelphis domestica GN=TCP1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.490e-13
Identity = 44/129 (34.11%), Postives = 74/129 (57.36%), Query Frame = 3
Query:    3 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKH----ALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            ++ +VV GGGA++  +S YL   + ++  + Q  I  +A++L +IP  L  NA  D+TD++ KLR  H      P  +   + G+D+  G   D+    V+EP +VK+ ++  ATEAA  IL +D+ +K
Sbjct:  404 ESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLIIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVNGKPRDNRQTGVFEPTMVKVKSLKFATEAAITILRIDDLIK 532          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: TCPA_SCHPO (T-complex protein 1 subunit alpha OS=Schizosaccharomyces pombe GN=cct1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.947e-13
Identity = 44/133 (33.08%), Postives = 71/133 (53.38%), Query Frame = 3
Query:    3 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAP---------YGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            ++  VV GGGA++  +S YL   + ++  + Q  I  +A+AL +IPR L  NA  D+T++  KLR  HA                 YG+D+  G I D+    V EP++ K+ ++ +A EA   IL +D ++K
Sbjct:  409 ESGKVVPGGGAVETALSIYLENFATSLGSREQLAIAEFAQALLIIPRTLAVNAAKDSTELTAKLRAYHAASQNAEVTDVKKRGYKNYGLDLLNGVIRDNVKAGVLEPSMSKLKSLKSAVEACIAILRIDTSIK 541          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: TCPA_RAT (T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.947e-13
Identity = 45/129 (34.88%), Postives = 74/129 (57.36%), Query Frame = 3
Query:    3 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKH----ALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            ++ +VV GGGA++  +S YL   + ++  + Q  I  +A++L VIP  L  NA  D+TD++ KLR  H      P  +   + G+D+  G   D+    V+EP +VK+ ++  ATEAA  IL +D+ +K
Sbjct:  404 ESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVHGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 532          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: TCPA1_MOUSE (T-complex protein 1 subunit alpha A OS=Mus musculus GN=Tcp1 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.947e-13
Identity = 45/129 (34.88%), Postives = 74/129 (57.36%), Query Frame = 3
Query:    3 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKH----ALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            ++ +VV GGGA++  +S YL   + ++  + Q  I  +A++L VIP  L  NA  D+TD++ KLR  H      P  +   + G+D+  G   D+    V+EP +VK+ ++  ATEAA  IL +D+ +K
Sbjct:  404 ESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVHGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 532          
The following BLAST results are available for this feature:
BLAST of DY258811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
TCPA_BOVIN6.690e-1434.88T-complex protein 1 subunit alpha OS=Bos taurus GN... [more]
THSA_THEK18.737e-1433.33Thermosome subunit alpha OS=Thermococcus sp. (stra... [more]
THSA_PYRKO8.737e-1433.33Thermosome subunit alpha OS=Pyrococcus kodakaraens... [more]
TCPG_THAWE1.141e-1335.34T-complex protein 1 subunit gamma OS=Thalassiosira... [more]
TCPA_CRIGR1.141e-1334.88T-complex protein 1 subunit alpha OS=Cricetulus gr... [more]
TCPA_SCHMA1.490e-1333.59T-complex protein 1 subunit alpha OS=Schistosoma m... [more]
TCPA_MONDO1.490e-1334.11T-complex protein 1 subunit alpha OS=Monodelphis d... [more]
TCPA_SCHPO1.947e-1333.08T-complex protein 1 subunit alpha OS=Schizosacchar... [more]
TCPA_RAT1.947e-1334.88T-complex protein 1 subunit alpha OS=Rattus norveg... [more]
TCPA1_MOUSE1.947e-1334.88T-complex protein 1 subunit alpha A OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CC08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258811 ID=DY258811; Name=DY258811; organism=Citrus clementina; type=EST; length=733bp
CGAAGAATTCCACTGTAGTTGCTGGTGGTGGTGCTATAGATATGGAGATA
AGTAAATACTTGAGGCAGGAATCCCGCGCAATAGCCGGGAAGTCTCAGTT
TTTTATCAACTCTTATGCAAAAGCTCTCGAGGTTATCCCACGCCAGTTGT
GTGACAATGCTGGATTTGATGCTACTGATGTGCTGAATAAATTAAGACAG
AAACATGCGCTTCCAACTGGTGAGGGTGCCCCTTATGGAGTGGATATCAA
CACTGGTGGAATTGCAGATTCATTTGCTAACTTTGTCTGGGAGCCAGCAG
TTGTCAAGATCAATGCTATAAATGCTGCTACTGAGGCAGCATGCCTTATC
TTGAGTGTGGATGAGACAGTAAAGAACCCTAAGTCTGAAAGTGCACAAGG
TGAAGCTGCCGCGAGTGCCATGGGCGGCAGAGGGCGTGGTCGTGGGAGGG
GCATGCGCAGGCGATGAGCTTACGATATTTCAAGTCTTGAATGTCTTTTT
TGATGGTGAATTGGGGGTGCTGATTCGATTAGATTTTCCTCATCTTTTGT
AGTCTCTCTATGTTGTGTTTCCAAGTGTAATTGAAAATTTAACAGACTGG
TGGTTACCCTCAGCCAGTTATGCCATTTGCGTTTGTTGTTGTTTGGTGAA
GGCAACGAGCCAACGAGACTATAGTTTTGTCCCATTGTGGAATTATGGCC
GTGGTTTTTATTATGTTAAATGGGGTTTTCTTC
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