DY258811

Overview
NameDY258811
Unique NameDY258811
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length733
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: THS_DESSY (Thermosome subunit OS=Desulfurococcus sp. (strain SY) GN=ths PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 44/127 (34.65%), Postives = 71/127 (55.91%), Query Frame = 3
Query:    3 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 383
            ++  ++  GGA ++E++  L + ++ + GK Q  I ++A+AL+VIPR L +NAG D  + L K+   H     +G   GVD+  G  AD     V  P  V   AI +A+EAA +IL +D+ +   K
Sbjct:  403 EDGKILPAGGAPEIELAIKLDEYAKEVGGKEQLAIEAFAEALKVIPRTLAENAGLDPVETLVKVIAAH---KEKGPTIGVDVFEGEPADMMEKGVIAPLRVPKQAIKSASEAAIMILRIDDVIAASK 526          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: TCPD_SCHPO (T-complex protein 1 subunit delta OS=Schizosaccharomyces pombe GN=cct4 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 39/121 (32.23%), Postives = 72/121 (59.50%), Query Frame = 3
Query:    3 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDE 365
            K   ++AGGG+ ++E ++ L + +R + G+    I ++++ALE+IP  L +NAG +A  V+ +LR +HA   GE    G+++  G + +     V +P +V I+AI  A E   +I+ +D+
Sbjct:  405 KQRALIAGGGSPEIEAAQRLLEHARQLEGREAICIRAFSEALEIIPVTLAENAGLNAIQVVTELRSRHA--NGEKTA-GINVRKGIVTNILEENVLQPLLVNISAIQLAAETTKMIMKIDD 522          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: TCPB_CAEEL (T-complex protein 1 subunit beta OS=Caenorhabditis elegans GN=cct-2 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 43/124 (34.68%), Postives = 70/124 (56.45%), Query Frame = 3
Query:    3 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            K S  VAG GA ++ +S  +  E++ +AGK    + ++ +AL  +P  +CDNAG D+ +++ +LR +HA         G+DI  G +AD     V E   VK+  +++A EA   IL VD+ +K
Sbjct:  396 KESKTVAGAGASEILMSSAIAVEAQKVAGKEALAVEAFGRALAQLPTIICDNAGLDSAELVTRLRAEHA---NGRHNMGIDIEKGEVADVTKLGVIESYNVKLCMVSSAAEATEQILRVDDIIK 516          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: TCPA_ENCCU (T-complex protein 1 subunit alpha OS=Encephalitozoon cuniculi GN=TCP1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.542e-13
Identity = 43/129 (33.33%), Postives = 76/129 (58.91%), Query Frame = 3
Query:    3 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKL--RQKHALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNP 380
            ++++VV GGGA++  +S  L + +  +  K    I+ YA++L  IP+ L  NAG D+ +++  L   Q   +    G+ + G+D+ +G I D+F   + EP+V K+ ++ AATEAA  IL ++E +  P
Sbjct:  406 ESNSVVPGGGAVECALSLMLEKFAFTVNSKEHVAIHRYAESLLSIPKILSTNAGLDSNELVANLLSSQSREMANSSGSKFLGIDVTSGKIQDNFEFGIIEPSVNKMKSLKAATEAAISILRINEVIILP 534          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: THSG_SULSO (Thermosome subunit gamma OS=Sulfolobus solfataricus GN=thsC PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.320e-13
Identity = 43/120 (35.83%), Postives = 65/120 (54.17%), Query Frame = 3
Query:   15 VVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANF-VWEPAVVKINAINAATEAACLILSVDETV 371
            +VAGGGA++ E++K LR ++R + GK Q   N++A ALE     L + AG D    L ++R KHA         G+D+    I D+     V +   VK   + +ATEAA  IL +D+ +
Sbjct:  400 IVAGGGAVEEELAKRLRDDARKVIGKEQLAFNAFADALEEYVSILSETAGMDPISALTEIRHKHATGLKNA---GIDVTKARIYDNMLELRVIDSLKVKEQVLKSATEAATAILKIDDMI 516          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: TCPA_PALPA (T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.320e-13
Identity = 45/129 (34.88%), Postives = 73/129 (56.59%), Query Frame = 3
Query:    3 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKH----ALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            ++ +VV GGGA++  +S YL   + ++  + Q  I  +A++L +IP  L  NA  DATD++ KLR  H      P  +   + G+D+  G   D+    V+EP +VK  ++  ATEAA  IL +D+ +K
Sbjct:  407 ESKSVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLIIPNTLAVNAAQDATDLVAKLRAFHNEAQVNPERKNLKWIGLDLINGKPRDNKQAGVFEPTLVKTKSLKFATEAAITILRIDDLIK 535          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: TCPA2_MOUSE (T-complex protein 1 subunit alpha B OS=Mus musculus GN=Tcp1 PE=1 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 3.320e-13
Identity = 45/126 (35.71%), Postives = 72/126 (57.14%), Query Frame = 3
Query:   12 TVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKH----ALPTGEGAPY-GVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            +VV GGGA++  +S YL   + ++  + Q  I  +A++L VIP  L  NA  D+TD++ KLR  H      P  +   + G+D+  G   D+    V+EP +VK+ ++  ATEAA  IL +D+ +K
Sbjct:  407 SVVPGGGAVEAALSIYLENYATSMGSREQLAIAEFARSLLVIPNTLAVNAAQDSTDLVAKLRAFHNEAQVNPERKNLKWIGLDLVHGKPRDNKQAGVFEPTIVKVKSLKFATEAAITILRIDDLIK 532          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: TCPQ_CANAL (T-complex protein 1 subunit theta OS=Candida albicans GN=CCT8 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.336e-13
Identity = 45/123 (36.59%), Postives = 76/123 (61.79%), Query Frame = 3
Query:    3 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            K++ ++ G GA+++E+ K +    ++  G  Q  I S+AKA EVIPR L + +G D++++L+KL   HA  TG  A  G+DI++G +AD+    V +    K +AI+ A +A   ILS+D+ +
Sbjct:  401 KDNRLLPGAGAVEIELMKRITAY-QSTPGLLQLAIKSFAKAFEVIPRVLAETSGHDSSEILSKLHAAHAEDTGLRA--GIDIDSGEVADT---AVLDILATKKSAIDLAVDATNTILSIDQII 517          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: TCPQ_SCHPO (Probable T-complex protein 1 subunit theta OS=Schizosaccharomyces pombe GN=cct8 PE=2 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 7.397e-13
Identity = 41/123 (33.33%), Postives = 63/123 (51.22%), Query Frame = 3
Query:    3 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV 371
            K++ ++ G GA DM++   L        G  Q  I  Y +A EV+PR + +NAG D TDV++KL   H    GE     V+    G  D+    +++  + K +AI  ATE    +L+VD+ V
Sbjct:  404 KDNRLIFGAGASDMQLCIRLISVGEKTPGIYQHAIKQYGEAFEVVPRTISENAGLDPTDVISKLYAAHHKENGESIGVDVECENDGTLDAKEAGIFDVLLAKKSAIRLATETVLTVLNVDQVV 526          
BLAST of DY258811 vs. ExPASy Swiss-Prot
Match: TCPB_YEAST (T-complex protein 1 subunit beta OS=Saccharomyces cerevisiae GN=CCT2 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.397e-13
Identity = 43/126 (34.13%), Postives = 74/126 (58.73%), Query Frame = 3
Query:    3 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQK--HALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVK 374
            K +  V GGG  +M +SK +  E++ I GK    + ++A+AL  +P  L DNAGFD++++++KLR    + + T      G+D+N G IAD     + E   +K   +++A+EAA ++L VD  ++
Sbjct:  396 KETRTVLGGGCAEMVMSKAVDTEAQNIDGKKSLAVEAFARALRQLPTILADNAGFDSSELVSKLRSSIYNGISTS-----GLDLNNGTIADMRQLGIVESYKLKRAVVSSASEAAEVLLRVDNIIR 516          
The following BLAST results are available for this feature:
BLAST of DY258811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
THS_DESSY2.542e-1334.65Thermosome subunit OS=Desulfurococcus sp. (strain ... [more]
TCPD_SCHPO2.542e-1332.23T-complex protein 1 subunit delta OS=Schizosacchar... [more]
TCPB_CAEEL2.542e-1334.68T-complex protein 1 subunit beta OS=Caenorhabditis... [more]
TCPA_ENCCU2.542e-1333.33T-complex protein 1 subunit alpha OS=Encephalitozo... [more]
THSG_SULSO3.320e-1335.83Thermosome subunit gamma OS=Sulfolobus solfataricu... [more]
TCPA_PALPA3.320e-1334.88T-complex protein 1 subunit alpha OS=Paleosuchus p... [more]
TCPA2_MOUSE3.320e-1335.71T-complex protein 1 subunit alpha B OS=Mus musculu... [more]
TCPQ_CANAL4.336e-1336.59T-complex protein 1 subunit theta OS=Candida albic... [more]
TCPQ_SCHPO7.397e-1333.33Probable T-complex protein 1 subunit theta OS=Schi... [more]
TCPB_YEAST7.397e-1334.13T-complex protein 1 subunit beta OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CC08FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258811 ID=DY258811; Name=DY258811; organism=Citrus clementina; type=EST; length=733bp
CGAAGAATTCCACTGTAGTTGCTGGTGGTGGTGCTATAGATATGGAGATA
AGTAAATACTTGAGGCAGGAATCCCGCGCAATAGCCGGGAAGTCTCAGTT
TTTTATCAACTCTTATGCAAAAGCTCTCGAGGTTATCCCACGCCAGTTGT
GTGACAATGCTGGATTTGATGCTACTGATGTGCTGAATAAATTAAGACAG
AAACATGCGCTTCCAACTGGTGAGGGTGCCCCTTATGGAGTGGATATCAA
CACTGGTGGAATTGCAGATTCATTTGCTAACTTTGTCTGGGAGCCAGCAG
TTGTCAAGATCAATGCTATAAATGCTGCTACTGAGGCAGCATGCCTTATC
TTGAGTGTGGATGAGACAGTAAAGAACCCTAAGTCTGAAAGTGCACAAGG
TGAAGCTGCCGCGAGTGCCATGGGCGGCAGAGGGCGTGGTCGTGGGAGGG
GCATGCGCAGGCGATGAGCTTACGATATTTCAAGTCTTGAATGTCTTTTT
TGATGGTGAATTGGGGGTGCTGATTCGATTAGATTTTCCTCATCTTTTGT
AGTCTCTCTATGTTGTGTTTCCAAGTGTAATTGAAAATTTAACAGACTGG
TGGTTACCCTCAGCCAGTTATGCCATTTGCGTTTGTTGTTGTTTGGTGAA
GGCAACGAGCCAACGAGACTATAGTTTTGTCCCATTGTGGAATTATGGCC
GTGGTTTTTATTATGTTAAATGGGGTTTTCTTC
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