DY258825

Overview
NameDY258825
Unique NameDY258825
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1036
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258825 vs. ExPASy Swiss-Prot
Match: VA714_ARATH (Vesicle-associated membrane protein 714 OS=Arabidopsis thaliana GN=VAMP714 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.960e-30
Identity = 71/232 (30.60%), Postives = 129/232 (55.60%), Query Frame = 1
Query:   91 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPA--SSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMXXXXXXXXXXXXWLVACGG 780
            ++Y+ V++GTVVLAE ++ +GN   +  + L+KL    S  +  +S D + F+ L   G  FL +A+++ GR VPF +LE +   F + YG    N                      AY ++ EF   L + M++  S+P  +  L++++ +++E++ +M++NIEK+++RG+RIELLVDKT  +Q  +  F++Q ++LRR +W++N ++ ++                CGG
Sbjct:    3 IVYAVVARGTVVLAEFSAVTGNTGAVVRRILEKLSPEISDERLCFSQDRYIFHILRSDGLTFLCMANDTFGRRVPFSYLEEIHMRFMKNYGKVAHNAP--------------------AYAMNDEFSRVLHQQMEFFSSNPS-VDTLNRVRGEVSEIRSVMVENIEKIMERGDRIELLVDKTATMQDSSFHFRKQSKRLRRALWMKNAKLLVLLTCLIVFLLYIIIASFCGG 213          
BLAST of DY258825 vs. ExPASy Swiss-Prot
Match: VAM7B_DICDI (Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.567e-29
Identity = 75/232 (32.33%), Postives = 128/232 (55.17%), Query Frame = 1
Query:   91 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNI-EKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMXXXXXXXXXXXXWLVACGGF 783
            +IYS V++G+ VLAE TS +GNF TI  + L  +P + +K +Y  + + F++L+     +L +ADE  GR +PF FL+ VK+ FK  YG                       + +IAY ++ +F   L+  M +  S+   +  +S+  A+I EVK I++ +I  ++L RGE+IE+LV++T+ L  Q+  F++Q +QL+  MW +N+++ L+             +  C GF
Sbjct:    3 IIYSLVARGSSVLAEFTSTNGNFVTITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLTYLCMADEEFGRRIPFTFLDDVKNRFKSMYG--------------------DKGKTAIAYGMNSDFSRTLENLMDH-YSNTTRVDTMSRTMAEIDEVKNILVSDIAPQLLKRGEKIEMLVERTDTLNQQSFKFKKQSKQLKCAMWWKNVKLMLVLGAIVLIIIFIIVMSYCDGF 213          
BLAST of DY258825 vs. ExPASy Swiss-Prot
Match: VAMP7_MOUSE (Vesicle-associated membrane protein 7 OS=Mus musculus GN=Vamp7 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.664e-28
Identity = 71/231 (30.74%), Postives = 122/231 (52.81%), Query Frame = 1
Query:   91 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMXXXXXXXXXXXXWLVACGGF 783
            ++++ V++GT +LA+H    GNF  +  Q L K+P+ ++K TYS   + F+++     V+L + D+   RS  F FL  VK  F+  YG+  Q                     ++ Y ++ EF   L   +++  S  + + K+ + +AQ+ E+KGIM+ NI+ V  RGER+ELL+DKTENL   + +F+   R L R M ++N+++ ++              + CGGF
Sbjct:    3 ILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQT--------------------ALPYAMNSEFSSVLAAQLKH-HSENKSLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNIKLTIIIIIVSIVFIYIIVSLLCGGF 212          
BLAST of DY258825 vs. ExPASy Swiss-Prot
Match: VAMP7_HUMAN (Vesicle-associated membrane protein 7 OS=Homo sapiens GN=VAMP7 PE=1 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 6.322e-28
Identity = 71/231 (30.74%), Postives = 121/231 (52.38%), Query Frame = 1
Query:   91 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMXXXXXXXXXXXXWLVACGGF 783
            ++++ V++GT +LA+H    GNF  +  Q L K+P+ ++K TYS   + F+++     V+L + D+   RS  F FL  +K  F+  YG+  Q                     ++ Y ++ EF   L   +++  S  + + K+ + +AQ+ E+KGIM+ NI+ V  RGER+ELL+DKTENL   + +F+   R L R M ++NL++ ++                CGGF
Sbjct:    3 ILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQT--------------------ALPYAMNSEFSSVLAAQLKH-HSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIVSIVFIYIIVSPLCGGF 212          
BLAST of DY258825 vs. ExPASy Swiss-Prot
Match: VAMP7_BOVIN (Vesicle-associated membrane protein 7 OS=Bos taurus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 6.322e-28
Identity = 71/231 (30.74%), Postives = 121/231 (52.38%), Query Frame = 1
Query:   91 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMXXXXXXXXXXXXWLVACGGF 783
            ++++ V++GT +LA+H    GNF  +  Q L K+P+ ++K TYS   + F+++     V+L + D+   RS  F FL  +K  F+  YG+  Q                     ++ Y ++ EF   L   +++  S  + + K+ + +AQ+ E+KGIM+ NI+ V  RGER+ELL+DKTENL   + +F+   R L R M ++NL++ ++                CGGF
Sbjct:    3 ILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQT--------------------ALPYAMNSEFSSVLAAQLKH-HSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIISVVFIYIIVSPLCGGF 212          
BLAST of DY258825 vs. ExPASy Swiss-Prot
Match: VAMP7_CHICK (Vesicle-associated membrane protein 7 OS=Gallus gallus GN=VAMP7 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.078e-27
Identity = 69/230 (30.00%), Postives = 121/230 (52.61%), Query Frame = 1
Query:   91 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMXXXXXXXXXXXXWLVACGG 780
            ++++ V++GT +LA+H    GNF  +  Q L K+P+ ++K TYS   + F+++     ++L + D+   RS  F FL  +K  F+  YG+  Q                     ++ Y ++ EF   L   ++Y  S  +   ++++ +AQ+ E+KGIM+ NI+ V  RGE++ELL+DKTENL   + +F+   R L R M ++NL++ ++               ACGG
Sbjct:    3 ILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIIYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQT--------------------ALPYAMNSEFSSVLAAQLKY-HSESKGTDQVAETQAQVDELKGIMVRNIDLVAQRGEKLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIVSIVIIYIIVSAACGG 211          
BLAST of DY258825 vs. ExPASy Swiss-Prot
Match: VAMP7_RAT (Vesicle-associated membrane protein 7 OS=Rattus norvegicus GN=Vamp7 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.839e-27
Identity = 70/231 (30.30%), Postives = 121/231 (52.38%), Query Frame = 1
Query:   91 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMXXXXXXXXXXXXWLVACGGF 783
            ++++ V++GT +LA+H    GNF  +  Q L K+P+ ++K TYS   + F+++     V+L + D+   RS  F FL  VK  F+  YG+  Q                     ++ Y ++ EF   L   +++  S  + + ++++ +AQ+ E+KGIM+ NI+ V  RGER+ELL+DKTENL   + +F+   R L R M ++N+++  +                CGGF
Sbjct:    3 ILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFGFLNEVKKRFQTTYGSRAQT--------------------ALPYAMNSEFSSVLAAQLKH-HSENQSLDRVTETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCVKNVKLTAIIVVVSIVFIYIIVSPLCGGF 212          
BLAST of DY258825 vs. ExPASy Swiss-Prot
Match: VAMP7_PONAB (Vesicle-associated membrane protein 7 OS=Pongo abelii GN=VAMP7 PE=2 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 2.402e-27
Identity = 70/231 (30.30%), Postives = 120/231 (51.95%), Query Frame = 1
Query:   91 LIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKLMXXXXXXXXXXXXWLVACGGF 783
            ++++ V++GT +LA+H    GNF  +  Q L K+P+ ++K TY    + F+++     V+L + D+   RS  F FL  +K  F+  YG+  Q                     ++ Y ++ EF   L   +++  S  + + K+ + +AQ+ E+KGIM+ NI+ V  RGER+ELL+DKTENL   + +F+   R L R M ++NL++ ++                CGGF
Sbjct:    3 ILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYPHGNYLFHYICQDRIVYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQT--------------------ALPYAMNSEFSSVLAAQLKH-HSENKGLDKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNLKLTIIIIIVSIVFIYIIVSPLCGGF 212          
BLAST of DY258825 vs. ExPASy Swiss-Prot
Match: VAM7A_DICDI (Vesicle-associated membrane protein 7A OS=Dictyostelium discoideum GN=vamp7A PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.104e-23
Identity = 67/215 (31.16%), Postives = 116/215 (53.95%), Query Frame = 1
Query:   76 MNQKGLIYSFVSKGTVVLAEHTSYSGNFSTIAIQCLQKLPASSSKYTYSCDGHTFNFLLDSGFVFLVVADESVGRSVPFVFLERVKDDFKQRYGASIQNEESHPLAXXXXXXXXXXXRFSIAYNLDREFGPRLKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKL 720
            M+Q  ++Y+ VS   V L EH   +GNF  +A + + K+P +S K  Y+ + H F+++ ++   FL +  E +G  +P  FL  ++  F + YG S    ++ P A                      F   L+E M+Y  S+P+  +K++ +  Q++E KG + D IEK + RGE+IE++VDKTE LQ ++  F+     L+R++W QN ++ +
Sbjct:    1 MSQTDILYACVSYKGVCLVEHKIANGNFIDLARRLITKIPPTSKKI-YTSENHNFHYISENDLAFLCLCHEKLGVQIPSEFLSDIRQQFIRSYGQSFS--QNSPTATYDP------------------FIRVLEERMKY-YSNPKS-NKMNLVMDQVSEAKGALTDAIEKTIHRGEKIEIIVDKTERLQSESFVFKSNSVALKRKLWWQNKKLAI 192          
BLAST of DY258825 vs. ExPASy Swiss-Prot
Match: SNC1_YEAST (Synaptobrevin homolog 1 OS=Saccharomyces cerevisiae GN=SNC1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.377e-11
Identity = 32/83 (38.55%), Postives = 53/83 (63.86%), Query Frame = 1
Query:  472 LKEHMQYCMSHPEEMSKLSKLKAQITEVKGIMMDNIEKVLDRGERIELLVDKTENLQFQADSFQRQGRQLRRRMWLQNLQMKL 720
            L EH +    + +  S+ ++L+A+I +  GIM DNI KV +RGER+  + DK +NL   A  F+R   ++R+ MW ++L+MK+
Sbjct:   12 LSEHDEERPQNVQSKSRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADNLAVSAQGFKRGANRVRKAMWYKDLKMKM 94          
The following BLAST results are available for this feature:
BLAST of DY258825 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
VA714_ARATH3.960e-3030.60Vesicle-associated membrane protein 714 OS=Arabido... [more]
VAM7B_DICDI2.567e-2932.33Vesicle-associated membrane protein 7B OS=Dictyost... [more]
VAMP7_MOUSE1.664e-2830.74Vesicle-associated membrane protein 7 OS=Mus muscu... [more]
VAMP7_HUMAN6.322e-2830.74Vesicle-associated membrane protein 7 OS=Homo sapi... [more]
VAMP7_BOVIN6.322e-2830.74Vesicle-associated membrane protein 7 OS=Bos tauru... [more]
VAMP7_CHICK1.078e-2730.00Vesicle-associated membrane protein 7 OS=Gallus ga... [more]
VAMP7_RAT1.839e-2730.30Vesicle-associated membrane protein 7 OS=Rattus no... [more]
VAMP7_PONAB2.402e-2730.30Vesicle-associated membrane protein 7 OS=Pongo abe... [more]
VAM7A_DICDI2.104e-2331.16Vesicle-associated membrane protein 7A OS=Dictyost... [more]
SNC1_YEAST5.377e-1138.55Synaptobrevin homolog 1 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CE10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258825 ID=DY258825; Name=DY258825; organism=Citrus clementina; type=EST; length=1036bp
GATTCTCTCTCTTTGTTCCTCGATTCGAAATTCATCCGGCGGCTTTCTTT
TCCGGAATTGAGAAATTGGAAAGAAATGAATCAGAAAGGGTTGATTTACA
GCTTTGTTTCGAAAGGCACTGTCGTTTTAGCCGAGCACACGTCGTATTCC
GGAAATTTCAGTACCATTGCCATTCAATGTTTACAGAAATTGCCTGCGAG
TAGTAGCAAGTACACGTATTCATGCGATGGCCACACTTTTAACTTCCTCC
TCGACTCTGGATTCGTATTTCTGGTTGTTGCTGATGAATCGGTTGGGAGA
AGTGTGCCGTTTGTTTTTCTCGAACGAGTCAAGGATGATTTTAAACAGCG
GTATGGGGCGAGTATTCAGAATGAGGAATCACACCCCCTTGCTGATGATG
ATGAGGATGATGATTTGTTTGAAGATCGATTTAGCATTGCCTATAATCTT
GACAGAGAATTTGGGCCAAGGCTTAAGGAGCACATGCAGTATTGTATGAG
CCACCCTGAGGAGATGAGCAAGCTTTCCAAATTAAAGGCTCAAATAACTG
AGGTCAAGGGGATTATGATGGACAATATTGAGAAGGTTTTGGATCGTGGG
GAGAGGATTGAGCTACTGGTGGATAAAACAGAGAACCTGCAATTCCAGGC
TGACAGCTTCCAGAGACAAGGGAGGCAGTTACGGCGAAGGATGTGGCTGC
AGAATCTGCAAATGAAGTTGATGGTGGGAGGAGCAGTTATTGCCTTTATC
ATCATAGTTTGGCTCGTTGCCTGCGGAGGATTTTAATGTTAATGGCGGGC
GAAGCAAAATGTTAGTACTGGTAGAATTTTCATTGTATAAAAGGAAGAAA
AAGGTTTCTGGTTCTGTATACAACAGTGTTGATGCCTAATGGAGAAACCG
CACTATCTGTTTTGACCTCCTCTTCCAAACTCCTGAACTACCTGAACGGA
ATGGGGTTTTGTTAATAATAATTCCTAAATGGGAAGGGGAATCCAACACC
TACCCTACCCTATAAAAACCAAGGGCTTTAATCCTT
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