DY258830

Overview
NameDY258830
Unique NameDY258830
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1089
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1260 contig Ccv1_Contig1260:1..1089. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258830 vs. ExPASy Swiss-Prot
Match: SCL9_ARATH (Scarecrow-like protein 9 OS=Arabidopsis thaliana GN=SCL9 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.901e-18
Identity = 66/269 (24.54%), Postives = 122/269 (45.35%), Query Frame = 1
Query:   31 GPPHLRITGIH-PQK-----EVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENLDFDKLRVKTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYXXXXXXXXXXXXXXXXXAKMDSFLNSLWGLSPKIMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLXARRLLQSYNCDGYRIAEDNRCVLICWHDRPLFSVSAW 819
            G P +RITGI  PQ      + +++   RL   A+   +PF++ ++  K + +  + L +   E   ++ + +  +L   D+   + + +                              D+ LN +  ++P + V    +  +N    + R  EAL+ ++++FD LE+ V R   ER+ +E  +FG E  N+IACEG+ER ER E  ++W  R   +    VP     M  +   + ++    + I +DNR +L  W  R + ++S W
Sbjct:  476 GSPKVRITGIEFPQPGFRPAQRVEETGQRLAAYAKLFGVPFEYKAIAKKWDAIQLEDLDIDRDEITVVNCLYRAENL--HDESVKVESCR------------------------------DTVLNLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFSSIFDMLETIVPREDEERMFLEMEVFGREALNVIACEGWERVERPETYKQWHVRAMRSGLVQVPFDPSIMKTSLHKVHTFYHKDFVIDQDNRWLLQGWKGRTVMALSVW 712          
BLAST of DY258830 vs. ExPASy Swiss-Prot
Match: SCL23_ARATH (Scarecrow-like protein 23 OS=Arabidopsis thaliana GN=SCL23 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 8.360e-18
Identity = 73/275 (26.55%), Postives = 119/275 (43.27%), Query Frame = 1
Query:    1 LIQALSTRPEGPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVVSKLENL-DFDKLRVKTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYXXXXXXXXXXXXXXXXXAKMDSFLNSLWGLSPKIMVVTEQDSNHN-GLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLXARRLLQSYNCDGYRIAEDNRCVLICWHDRPLFSVSAW 819
            L   L++RP     +RITG     ++L     RL + A  L++PF+F+ +   + NL D  +L  + GEA+ +  +      +  ++  +L  L+                                       L P ++ V EQ+ +++ G + + R +EAL+ Y+ALFD L   +   S ER  VE+++ G EI+NI+A  G  RK       KW +      F  V L       A  LL     +GY + E+N  + + W D  L + SAW
Sbjct:  168 LFHILASRPRKLRSIRITGFGSSSDLLASTGRRLADFASSLNLPFEFHPIEGIIGNLIDPSQLATRQGEAVVVHWMQHRLYDVTGNNLETLEILRR--------------------------------------LKPNLITVVEQELSYDDGGSFLGRFVEALHYYSALFDALGDGLGEESGERFTVEQIVLGTEIRNIVAHGGGRRKRM-----KWKEELSRVGFRPVSLRGNPATQAGLLLGMLPWNGYTLVEENGTLRLGWKDLSLLTASAW 399          
BLAST of DY258830 vs. ExPASy Swiss-Prot
Match: SCL8_ARATH (Scarecrow-like protein 8 OS=Arabidopsis thaliana GN=SCL8 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.689e-16
Identity = 77/290 (26.55%), Postives = 127/290 (43.79%), Query Frame = 1
Query:    1 LIQALSTRPEGP------PHLRITGIHPQ----------KEVLDQMAHRLTEEAEKLDIPFQFNSVVS-KLENLDFDKLRVKTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYXXXXXXXXXXXXXXXXXAKMDSFLNSLWGLSPKIMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLXARRLLQSYNCDGYRIAEDNRCVLICWHDRPLFSVSAW 819
            L++ LSTR  G       P ++IT +             +E L  +   L++  ++L I   FN V S +L +L+ + L     E LA++   +L+ +         +  +N                             D  L  + GL P+++ + EQ+ N N    + R+ E+   Y AL + +ES+V  T+ +R KVE+ + G ++ N +ACEG +R ER E   KW  R  +A F  +PLS   +  + +   +    G+ + EDN  V   W  R L   SAW
Sbjct:  384 LLRTLSTRRNGKSQSQNSPVVKITAVANNVYGCLVDDGGEERLKAVGDLLSQLGDRLGISVSFNVVTSLRLGDLNRESLGCDPDETLAVNLAFKLYRVPDES-----VCTENP---------------------------RDELLRRVKGLKPRVVTLVEQEMNSNTAPFLGRVSESCACYGALLESVESTVPSTNSDRAKVEEGI-GRKLVNAVACEGIDRIERCEVFGKWRMRMSMAGFELMPLSE-KIAESMKSRGNRVHPGFTVKEDNGGVCFGWMGRALTVASAW 639          
BLAST of DY258830 vs. ExPASy Swiss-Prot
Match: MOC_ORYSJ (Protein MONOCULM 1 OS=Oryza sativa subsp. japonica GN=MOC1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.277e-15
Identity = 78/284 (27.46%), Postives = 124/284 (43.66%), Query Frame = 1
Query:    1 LIQALSTRPE---GPPHLRITGIHPQKEVLDQMAHRLTEEAEKLDIPFQFNSVV-SKLENLDFDKLRVKTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYXXXXXXXXXXXXXXXXXAKMDSFLNSLWGLSPKIMVVTEQDSNHNGL------TLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLXARRLLQ-SYNCDGYRIAEDNRCVLICWHDRPLFSVSAW 819
            L+QA++ R +   GPP +R+TG    ++ L +  +RL   A  + +PF F  ++ S             TG A A S+      L    D  +L       L N  G+                  ++ +FL  +  +SP ++ + E+++   G        L  R+  A+  Y+A+F+ LE++V   S ERL VE+ + G EI+  +   G         +E+W      A F   PLS   +  AR LL+  Y  +GY + E      + W  RPL SVSAW
Sbjct:  174 LLQAIAERADPALGPPEVRVTGAGADRDTLLRTGNRLRAFARSIHLPFHFTPLLLSCATTAPHHVAGTSTGAAAAASTAAAATGLEFHPD-ETLAVNCVMFLHNLAGHD-----------------ELAAFLKWVKAMSPAVVTIAEREAGGGGGGGDHIDDLPRRVGVAMDHYSAVFEALEATVPPGSRERLAVEQEVLGREIEAAVGPSG---GRWWRGIERWGGAARAAGFAARPLSAFAVSQARLLLRLHYPSEGYLVQEARGACFLGWQTRPLLSVSAW 436          
BLAST of DY258830 vs. ExPASy Swiss-Prot
Match: NSP2_MEDTR (Nodulation-signaling pathway 2 protein OS=Medicago truncatula GN=NSP2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.476e-14
Identity = 77/286 (26.92%), Postives = 117/286 (40.91%), Query Frame = 1
Query:    1 LIQALSTRPEGPPHLRITGI------HPQKEVLDQMAHRLTEEAEKLDIPFQFNSV-VSKLENLDFDKLRVKTGEALAISSVLQLHSLLAADDYASLIALKNSLLANGYGYXXXXXXXXXXXXXXXXXAKMDSFLNSLWGLSPKIMVVTEQDSNHNGLTLMERLLEALYSYAALFDCLESSVSRTSMERLKVEKMLFGEEIKNIIACEGFERKERHEKLEKWIQRFDLACFGNVPLSYCGMLXARRLLQSYNCDGYRIAE----DNRCVLICWHDRPLFSVSAWSC 825
            LIQ+L++   GP HLRIT +            + +   RLT  A  L  PF F+   +   E      L++  GEAL  + +L L  L                                          + SFLN    L+PK++ + E++        +ER +++L+ Y+A+FD LE+     +  R  VE++ FG  I   +      R    E+   W +      F  VP+S+     A+ LL  +N DGYR+ E     N+ VL  W  R L S S W+C
Sbjct:  256 LIQSLASNNNGP-HLRITALSRTGTGRRSIATVQETGRRLTSFAASLGQPFSFHHCRLDSDETFRPSALKLVRGEALVFNCMLNLPHL-----------------------------------SYRAPESVASFLNGAKTLNPKLVTLVEEEVGSVIGGFVERFMDSLHHYSAVFDSLEAGFPMQNRARTLVERVFFGPRIAGSLG--RIYRTGGEEERRSWGEWLGEVGFRGVPVSFANHCQAKLLLGLFN-DGYRVEEVGVGSNKLVL-DWKSRRLLSASLWTC 501          
The following BLAST results are available for this feature:
BLAST of DY258830 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
SCL9_ARATH4.901e-1824.54Scarecrow-like protein 9 OS=Arabidopsis thaliana G... [more]
SCL23_ARATH8.360e-1826.55Scarecrow-like protein 23 OS=Arabidopsis thaliana ... [more]
SCL8_ARATH2.689e-1626.55Scarecrow-like protein 8 OS=Arabidopsis thaliana G... [more]
MOC_ORYSJ2.277e-1527.46Protein MONOCULM 1 OS=Oryza sativa subsp. japonica... [more]
NSP2_MEDTR1.476e-1426.92Nodulation-signaling pathway 2 protein OS=Medicago... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CF07FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258830 ID=DY258830; Name=DY258830; organism=Citrus clementina; type=EST; length=1089bp
CTCATTCAAGCTTTGAGTACAAGGCCTGAAGGGCCACCTCATTTGAGAAT
CACGGGGATTCATCCGCAGAAGGAGGTGTTGGATCAAATGGCTCATAGAT
TGACCGAAGAAGCAGAGAAATTGGATATCCCTTTCCAATTCAATTCAGTG
GTTAGCAAATTAGAAAATCTTGATTTTGACAAATTGAGAGTTAAAACCGG
TGAGGCTCTCGCGATCAGTTCTGTTCTTCAGCTGCATTCCCTTTTGGCCG
CTGATGATTATGCCTCCTTGATAGCATTGAAGAATTCCCTTTTGGCTAAT
GGGTATGGGTATAGCCAGAGTCCTGATTCAGTCTCATCATCGCCTCTGTC
TCCAAATGCTTCAGCAAAGATGGATAGCTTTCTTAATTCTCTGTGGGGCT
TGTCACCAAAAATTATGGTGGTGACAGAACAGGATTCTAATCACAATGGC
TTGACTCTCATGGAGAGGTTATTGGAGGCTCTTTACTCGTATGCAGCATT
GTTTGATTGTTTAGAATCTAGTGTTTCAAGAACATCAATGGAGAGATTGA
AGGTGGAGAAAATGCTGTTTGGGGAGGAAATTAAAAACATTATAGCTTGT
GAAGGATTTGAAAGGAAGGAAAGACATGAGAAACTCGAGAAGTGGATTCA
ACGTTTTGATTTGGCTTGCTTTGGGAATGTGCCTTTGAGCTACTGTGGTA
TGTTGCANGCGAGGAGATTGTTGCAGAGCTACAACTGTGATGGGTATAGG
ATCGCAGAAGACAACAGGTGTGTGCTAATTTGCTGGCACGATCGACCTCT
ATTTTCGGTATCAGCCTGGAGCTGTAGGAATTAAGAATGGTGAATGATTG
ATGGTGACCTTGAAATGATTCTGTTTATCTGCAATGGATTCTGTTTGTAA
TGATTTAAAAGTCCTAGTCATGAACCCTCCTTACAAATCTTTTGTTTCAT
TCTTATTCATTTTCCTTTGAATGGAAATTAGATTGTGAATCTTAATTTTG
CCGTGTTAAAAAAAACCTATACCCTTTTGTTTTGTAATAATTTTGGAGTA
CACAAAAATTTTTTTAAAATTTTGAATCCATTGTGTTCC
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