DY258835

Overview
NameDY258835
Unique NameDY258835
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length586
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258835 vs. ExPASy Swiss-Prot
Match: RL43_ASHGO (60S ribosomal protein L43 OS=Ashbya gossypii GN=RPL43 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 6.127e-32
Identity = 63/92 (68.48%), Postives = 72/92 (78.26%), Query Frame = 1
Query:   64 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES 339
            M KRTKK GI GKYG RYG+SLR+Q+KK+EV QH++Y C FCGK AVKR A GIW C  C K  AGGAYT +TA+A TVRSTIRRLRE  E+
Sbjct:    1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEVQQHARYDCSFCGKKAVKRGAAGIWNCSSCKKTVAGGAYTFSTAAAATVRSTIRRLREMAEA 92          
BLAST of DY258835 vs. ExPASy Swiss-Prot
Match: RL37A_CHICK (60S ribosomal protein L37a OS=Gallus gallus GN=RPL37A PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 8.002e-32
Identity = 64/88 (72.73%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   64 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 327
            M KRTKK GIVGKYGTRYGASLRK +KK+E+SQH+KY C FCGK  +KRKAVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of DY258835 vs. ExPASy Swiss-Prot
Match: RL37A_CAEEL (60S ribosomal protein L37a OS=Caenorhabditis elegans GN=rpl-43 PE=2 SV=3)

HSP 1 Score: 136.732 bits (343), Expect = 8.002e-32
Identity = 65/91 (71.43%), Postives = 71/91 (78.02%), Query Frame = 1
Query:   64 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 336
            M KRTKK GIVGKYGTRYGASLRK  KK+EV+QHS+Y C FCGK A+KRKA GIW C  C KV AGGAY   T +A TVRSTIRRLR+  E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMAKKLEVAQHSRYTCSFCGKEAMKRKATGIWNCAKCHKVVAGGAYVYGTVTAATVRSTIRRLRDLKE 91          
BLAST of DY258835 vs. ExPASy Swiss-Prot
Match: RL37A_XENLA (60S ribosomal protein L37a OS=Xenopus laevis GN=rpl37a PE=3 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 1.045e-31
Identity = 63/88 (71.59%), Postives = 73/88 (82.95%), Query Frame = 1
Query:   64 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 327
            M KRTKK GIVGKYGTR+GASLRK +KK+E+SQH+KY C FCGK  +KRKAVGIW C  C K+ AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRFGASLRKMVKKIEISQHAKYTCSFCGKTKMKRKAVGIWHCGSCMKIVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of DY258835 vs. ExPASy Swiss-Prot
Match: RL37A_RAT (60S ribosomal protein L37a OS=Rattus norvegicus GN=Rpl37a PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.783e-31
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   64 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 327
            M KRTKK GIVGKYGTRYGASLRK +KK+E+SQH+KY C FCGK  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of DY258835 vs. ExPASy Swiss-Prot
Match: RL37A_PONAB (60S ribosomal protein L37a OS=Pongo abelii GN=RPL37A PE=3 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 1.783e-31
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   64 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 327
            M KRTKK GIVGKYGTRYGASLRK +KK+E+SQH+KY C FCGK  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of DY258835 vs. ExPASy Swiss-Prot
Match: RL37A_MOUSE (60S ribosomal protein L37a OS=Mus musculus GN=Rpl37a PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.783e-31
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   64 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 327
            M KRTKK GIVGKYGTRYGASLRK +KK+E+SQH+KY C FCGK  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of DY258835 vs. ExPASy Swiss-Prot
Match: RL37A_HUMAN (60S ribosomal protein L37a OS=Homo sapiens GN=RPL37A PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 1.783e-31
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   64 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 327
            M KRTKK GIVGKYGTRYGASLRK +KK+E+SQH+KY C FCGK  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of DY258835 vs. ExPASy Swiss-Prot
Match: RL37A_BOVIN (60S ribosomal protein L37a OS=Bos taurus GN=RPL37A PE=3 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 1.783e-31
Identity = 63/88 (71.59%), Postives = 72/88 (81.82%), Query Frame = 1
Query:   64 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLRE 327
            M KRTKK GIVGKYGTRYGASLRK +KK+E+SQH+KY C FCGK  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S IRRL+E
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKE 88          
BLAST of DY258835 vs. ExPASy Swiss-Prot
Match: RL37A_ICTPU (60S ribosomal protein L37a OS=Ictalurus punctatus GN=rpl37a PE=3 SV=3)

HSP 1 Score: 134.806 bits (338), Expect = 3.041e-31
Identity = 62/91 (68.13%), Postives = 73/91 (80.22%), Query Frame = 1
Query:   64 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTE 336
            M KRTKK GIVGKYGTRYGASLRK +KK+E+SQH+KY C FCGK  +KR+AVGIW C  C K  AGGA+T NT SAVTV+S I+RL+E  +
Sbjct:    1 MAKRTKKVGIVGKYGTRYGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIKRLKEMKD 91          
The following BLAST results are available for this feature:
BLAST of DY258835 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
RL43_ASHGO6.127e-3268.4860S ribosomal protein L43 OS=Ashbya gossypii GN=RP... [more]
RL37A_CHICK8.002e-3272.7360S ribosomal protein L37a OS=Gallus gallus GN=RPL... [more]
RL37A_CAEEL8.002e-3271.4360S ribosomal protein L37a OS=Caenorhabditis elega... [more]
RL37A_XENLA1.045e-3171.5960S ribosomal protein L37a OS=Xenopus laevis GN=rp... [more]
RL37A_RAT1.783e-3171.5960S ribosomal protein L37a OS=Rattus norvegicus GN... [more]
RL37A_PONAB1.783e-3171.5960S ribosomal protein L37a OS=Pongo abelii GN=RPL3... [more]
RL37A_MOUSE1.783e-3171.5960S ribosomal protein L37a OS=Mus musculus GN=Rpl3... [more]
RL37A_HUMAN1.783e-3171.5960S ribosomal protein L37a OS=Homo sapiens GN=RPL3... [more]
RL37A_BOVIN1.783e-3171.5960S ribosomal protein L37a OS=Bos taurus GN=RPL37A... [more]
RL37A_ICTPU3.041e-3168.1360S ribosomal protein L37a OS=Ictalurus punctatus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CG01FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258835 ID=DY258835; Name=DY258835; organism=Citrus clementina; type=EST; length=586bp
CGCTCTACGTCTCTAACAGCCGCTGCTTGTTGAAGAGCTACAGACCTTCG
CTCCAACGCCACAATGACCAAGCGTACGAAGAAGGCTGGAATCGTTGGAA
AGTATGGTACCCGTTATGGTGCCAGTTTGAGGAAGCAAATTAAGAAGATG
GAGGTTAGTCAGCATAGCAAATATTTCTGCGAATTTTGCGGGAAGTATGC
GGTGAAGAGGAAAGCTGTTGGCATTTGGGGCTGCAAGGACTGTGGGAAAG
TCAAGGCAGGCGGTGCCTACACTTTGAACACTGCTAGTGCTGTGACTGTG
AGGAGCACAATCCGTAGGTTGAGGGAGCAAACTGAAAGCTGAGCTTGCCA
CCGTTGGCTTACTCCCGTGTCTTAGGTCGTTTGATCTTTAGTTTCGGATA
CAACCTTAAATCATTTTTGATGTTGCTTTATTTCTAGATGCAAAACAATT
GGTTGTTGGAACATGAAACTTTTGGCTGTGTTTTGACTCTTGAGATGTTC
ATTCACTATTTTTCCTATGAAATTATGTTATCTAGTGGGTTTTCCTATGA
GATTATGTTATCTAGTGGGTTGATTAAATTGTTTTA
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