DY258836

Overview
NameDY258836
Unique NameDY258836
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1266
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFG_ARATH (Auxin response factor 7 OS=Arabidopsis thaliana GN=ARF7 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 2.424e-19
Identity = 41/66 (62.12%), Postives = 55/66 (83.33%), Query Frame = 3
Query:  300 SQVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497
            ++V K GSVGRS+D++R+  Y+ELR +L +MFGIEG+ EDP  S W+LV+VD END+LL+GDDPWE
Sbjct: 1040 TKVQKRGSVGRSIDVNRYRGYDELRHDLARMFGIEGQLEDPQTSDWKLVYVDHENDILLVGDDPWE 1105          
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSJ (Auxin response factor 16 OS=Oryza sativa subsp. japonica GN=ARF16 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.052e-19
Identity = 41/66 (62.12%), Postives = 54/66 (81.82%), Query Frame = 3
Query:  300 SQVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497
            ++V K GSVGRS+DI+R+  Y+ELR +L  MFGI+G+ EDP R  W+LV+VD END+LL+GDDPWE
Sbjct:  943 TKVQKRGSVGRSIDITRYRDYDELRHDLACMFGIQGQLEDPYRMDWKLVYVDHENDILLVGDDPWE 1008          
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFP_ORYSI (Auxin response factor 16 OS=Oryza sativa subsp. indica GN=ARF16 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.052e-19
Identity = 41/66 (62.12%), Postives = 54/66 (81.82%), Query Frame = 3
Query:  300 SQVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497
            ++V K GSVGRS+DI+R+  Y+ELR +L  MFGI+G+ EDP R  W+LV+VD END+LL+GDDPWE
Sbjct:  943 TKVQKRGSVGRSIDITRYRDYDELRHDLACMFGIQGQLEDPYRMDWKLVYVDHENDILLVGDDPWE 1008          
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFE_ORYSJ (Auxin response factor 5 OS=Oryza sativa subsp. japonica GN=ARF5 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.571e-18
Identity = 41/66 (62.12%), Postives = 53/66 (80.30%), Query Frame = 3
Query:  300 SQVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497
            ++VYK G+VGRS+DI R+S Y EL+  L +MFGIEG+ ED  R GW+LV+ D E+D+LLLGDDPWE
Sbjct: 1012 TKVYKRGAVGRSIDIGRYSGYEELKHALARMFGIEGQLEDRQRIGWKLVYKDHEDDILLLGDDPWE 1077          
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFU_ORYSJ (Auxin response factor 21 OS=Oryza sativa subsp. japonica GN=ARF21 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 4.571e-18
Identity = 53/144 (36.81%), Postives = 82/144 (56.94%), Query Frame = 3
Query:   66 IRTDELLQRQQSNLPSPSFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSLGSKYEPSQVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497
            I + +  Q   S++ S SF  A+   +S + +++ +P  N               S AGP+  R +            ++V+K G+VGRS+DI+R+S Y+EL+ ++ +MFGIEG+  D  R GW+LV+ D E DVLL+GDDPWE
Sbjct:  944 ISSKDSQQELSSSMISHSFGVADMAFNSIDSAINDTPFLNRNSR-----------SAAGPAHQRMR----------TYTKVHKRGAVGRSIDINRYSGYDELKHDVARMFGIEGQLGDQNRVGWKLVYEDHEKDVLLVGDDPWE 1066          
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFS_ORYSJ (Auxin response factor 19 OS=Oryza sativa subsp. japonica GN=ARF19 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.737e-17
Identity = 39/66 (59.09%), Postives = 54/66 (81.82%), Query Frame = 3
Query:  300 SQVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497
            ++VYK G+VGRS+D+S+FS Y+EL+  L +MF IEG+ E+  R GW+LV+ D E+D+LLLGDDPWE
Sbjct: 1030 TKVYKRGAVGRSIDMSQFSGYDELKHALARMFSIEGQLEERQRIGWKLVYKDHEDDILLLGDDPWE 1095          
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSJ (Auxin response factor 11 OS=Oryza sativa subsp. japonica GN=ARF11 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.870e-17
Identity = 63/183 (34.43%), Postives = 89/183 (48.63%), Query Frame = 3
Query:   84 LQRQQSNLPSPS--FSKANFMDSSTEISVSIS------------------PM-----------------QNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSLGSKYEP--------SQVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497
            LQ   SNLPS S  F + +F + S   S ++S                  PM                 ++ + SLPE     ++ +  G S       + SL    +P        ++V K GSVGRS+D++ F +Y+ELR  +  MFG++GK E P  S W+LV+VD ENDVLL+GDDPWE
Sbjct:  743 LQHDGSNLPSTSNSFVQMSFSEESASQSANLSGLHMESTHRSINTTSCSQPMSTGGFDAGMYSKLPRLKESQILSLPE-----IHTNSMGTSACSMDATEYSLDRSAKPMKPPVRTYTKVQKQGSVGRSIDVTGFRNYHELRSAIACMFGLQGKLEHPGSSEWKLVYVDYENDVLLVGDDPWE 920          
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFK_ORYSI (Auxin response factor 11 OS=Oryza sativa subsp. indica GN=ARF11 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 3.870e-17
Identity = 63/183 (34.43%), Postives = 89/183 (48.63%), Query Frame = 3
Query:   84 LQRQQSNLPSPS--FSKANFMDSSTEISVSIS------------------PM-----------------QNMLGSLPEGSGNLLNFSGAGPSMLRQQFPQQSLGSKYEP--------SQVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497
            LQ   SNLPS S  F + +F + S   S ++S                  PM                 ++ + SLPE     ++ +  G S       + SL    +P        ++V K GSVGRS+D++ F +Y+ELR  +  MFG++GK E P  S W+LV+VD ENDVLL+GDDPWE
Sbjct:  743 LQHDGSNLPSTSNSFVQMSFSEESASQSANLSGLHMESTHRSINTTSCSQPMSTGGFDAGMYSKLPRLKESQILSLPE-----IHTNSMGTSACSMDATEYSLDRSAKPMKPPVRTYTKVQKQGSVGRSIDVTGFRNYHELRSAIACMFGLQGKLEHPGSSEWKLVYVDYENDVLLVGDDPWE 920          
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFE_ARATH (Auxin response factor 5 OS=Arabidopsis thaliana GN=ARF5 PE=1 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 5.588e-16
Identity = 46/105 (43.81%), Postives = 61/105 (58.10%), Query Frame = 3
Query:  225 NFSGAGPSMLRQQFP-----QQSLGSKYEP---------SQVYKSGSVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE 497
            N  G G S     F      Q S GS ++          ++V K+GSVGRS+D++ F  Y EL+  +  MFG+EG    P  SGW+LV+VD E+DVLL+GDDPWE
Sbjct:  757 NSGGTGTSSSNVDFDDCSLRQNSKGSSWQKIATPRVRTYTKVQKTGSVGRSIDVTSFKDYEELKSAIECMFGLEGLLTHPQSSGWKLVYVDYESDVLLVGDDPWE 861          
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFD_ARATH (Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.895e-12
Identity = 37/91 (40.66%), Postives = 61/91 (67.03%), Query Frame = 3
Query:  267 PQQSLGSKYEPSQVYKSGS-VGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE*VTVMIFQIFYST 536
            PQ S  SK   ++V+K GS VGR++D+SR + Y++L  EL ++F +EG   DP   GW++++ D END++++GDDPW     ++++I   T
Sbjct:  659 PQSS--SKRICTKVHKQGSQVGRAIDLSRLNGYDDLLMELERLFNMEGLLRDP-EKGWRILYTDSENDMMVVGDDPWHDFCNVVWKIHLYT 746          
The following BLAST results are available for this feature:
BLAST of DY258836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
ARFG_ARATH2.424e-1962.12Auxin response factor 7 OS=Arabidopsis thaliana GN... [more]
ARFP_ORYSJ7.052e-1962.12Auxin response factor 16 OS=Oryza sativa subsp. ja... [more]
ARFP_ORYSI7.052e-1962.12Auxin response factor 16 OS=Oryza sativa subsp. in... [more]
ARFE_ORYSJ1.571e-1862.12Auxin response factor 5 OS=Oryza sativa subsp. jap... [more]
ARFU_ORYSJ4.571e-1836.81Auxin response factor 21 OS=Oryza sativa subsp. ja... [more]
ARFS_ORYSJ1.737e-1759.09Auxin response factor 19 OS=Oryza sativa subsp. ja... [more]
ARFK_ORYSJ3.870e-1734.43Auxin response factor 11 OS=Oryza sativa subsp. ja... [more]
ARFK_ORYSI3.870e-1734.43Auxin response factor 11 OS=Oryza sativa subsp. in... [more]
ARFE_ARATH5.588e-1643.81Auxin response factor 5 OS=Arabidopsis thaliana GN... [more]
ARFD_ARATH4.895e-1240.66Auxin response factor 4 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CG02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258836 ID=DY258836; Name=DY258836; organism=Citrus clementina; type=EST; length=1266bp
AGGCAGAGGATCGGGCACAACAACAGCAACAGCCACAACAACACATGTAT
CATGATGCACTTCAGATTCGAACTGATGAGCTTCTGCAGAGGCAGCAGTC
AAATCTGCCTTCACCATCATTTTCTAAAGCAAACTTCATGGACTCAAGCA
CGGAAATCTCAGTTTCTATCAGTCCTATGCAGAACATGCTGGGTTCCTTG
CCTGAAGGGAGTGGCAATCTTTTGAACTTCTCAGGAGCTGGTCCATCTAT
GCTGAGGCAGCAGTTTCCCCAACAATCGTTGGGTTCTAAGTATGAACCTT
CACAGGTCTATAAATCGGGTTCGGTTGGGCGCTCACTAGACATCTCCCGG
TTCAGCAGCTATAATGAGCTGCGGGAAGAGCTGGGTCAGATGTTTGGAAT
TGAGGGGAAGTTTGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCG
TCGACAGGGAGAATGACGTGCTTCTCCTTGGAGACGACCCATGGGAGTAA
GTGACCGTCATGATTTTCCAGATTTTTTATTCAACTTAACTTGTGTGTTA
AGATTTGTCTCCTACTGCTTGTTTTATGCTTGGTATACATCTGGTCAGGA
TTGCTAGCATCACTTCCTTTTATATGTAGATTTCGAAGTTCCAGACCATC
AGATGAAAGCCCTTTGAGTTACTGAGATTGCATTTAACACGTGTCTTTAT
TAAGGTGCATCAATTATACCTGTCAAATACAATCTGTCAGTAAATTGCTA
AATTTTGAAAAATATATAATCTGTCATTTAAATTGCTTTATTTTCAAAAA
CTGTCAACTACAACCTGGCAGTTAAATTTGCTTATTTTTGAAACCCAATG
ACCTAATATTTGTGAAATTGTGACAATTTTTTAAACCATAAATTCATGAA
TATTGAAAATCCCCTCGGGGGGTGCCTTTTAATTGAATTTACCCCGGCAT
TCCAGTTCCCTTTTGCAAAGGCAATCCTTAAAAAGGGGAAATCATTTGCT
TCTTATAATTTTTTGGTTGGTTCTTTGGGTTTCTTTTTTCCAAATTTTGT
TCTTCCCAAAACCCGGGTTAAAAACAAAAAAAAACAATTTGGGTGTGTAA
GAGAAATGACATTTTGCCCCAATTTTTATCTCCCCTTTTCCCCCTAAGGA
GACACCCCCCATAACACAGGAAAACCCTTTTTTGGGGGCGGGGCCTTTTT
TTGTTGAGAAAATAAAGGTTTTGTTGGGCGTCAATATACCACACAAAAAA
AATACTCTTTCTCCCC
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