DY258836

Overview
NameDY258836
Unique NameDY258836
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1266
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 4.895e-12
Identity = 45/145 (31.03%), Postives = 76/145 (52.41%), Query Frame = 3 
Query:  117 SFSKANFMDSSTEISVSISPMQNMLGSLPEGSGNLLNFSGAG-PSMLRQQFP---QQSLGSKYEPSQVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE*VTVMIFQIFYST 536
            + S+ N ++ +  ++   SP    L    +GS +  +    G P       P   Q    S    ++V+K G ++GRS+D+S+F +Y EL  EL ++F   G+   P +  W +V+ D END++L+GDDPW+    M+ +IF  T
Sbjct:  671 TMSQRNNLNDAAGLTQIASPKVQDLSDQSKGSKSTNDHREQGRPFQTNNPHPKDAQTKTNSSRSCTKVHKQGIALGRSVDLSKFQNYEELVAELDRLFEFNGELMAP-KKDWLIVYTDEENDMMLVGDDPWQEFCCMVRKIFIYT 814
[Close]
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.090e-11
Identity = 33/80 (41.25%), Postives = 58/80 (72.50%), Query Frame = 3 
Query:  300 SQVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE*VTVMIFQIFYST 536
            ++V+K G ++GRS+D+S+FS+Y+EL+ EL +MF  +G+     ++ WQ+V+ D E D++L+GDDPWE    ++ +I+  T
Sbjct:  695 TKVHKQGVALGRSVDLSKFSNYDELKAELDKMFEFDGELVSSNKN-WQIVYTDNEGDMMLVGDDPWEEFCSIVRKIYIYT 773
[Close]
BLAST of DY258836 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.860e-11
Identity = 35/90 (38.89%), Postives = 56/90 (62.22%), Query Frame = 3 
Query:  270 QQSLGSKYEPSQVYKSG-SVGRSLDISRFSSYNELREELGQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWE*VTVMIFQIFYST 536
            +Q  GS     +V+K G ++GRS+D+++F+ Y+EL  EL QMF   G+     ++ W +V+ D E D++L+GDDPW     M+ +IF  T
Sbjct:  706 KQQNGSSRSCKKVHKQGIALGRSIDLTKFTCYDELIAELDQMFDFNGELNSSSKN-WMVVYTDNEGDMMLVGDDPWNEFCNMVHKIFIYT 794
The following BLAST results are available for this feature:
BLAST of DY258836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
ARFB_ARATH4.895e-1231.03Auxin response factor 2 OS=Arabidopsis thaliana GN... [more]
ARFD_ORYSJ1.090e-1141.25Auxin response factor 4 OS=Oryza sativa subsp. jap... [more]
ARFX_ORYSJ1.860e-1138.89Auxin response factor 24 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CG02FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258836 ID=DY258836; Name=DY258836; organism=Citrus clementina; type=EST; length=1266bp
AGGCAGAGGATCGGGCACAACAACAGCAACAGCCACAACAACACATGTAT
CATGATGCACTTCAGATTCGAACTGATGAGCTTCTGCAGAGGCAGCAGTC
AAATCTGCCTTCACCATCATTTTCTAAAGCAAACTTCATGGACTCAAGCA
CGGAAATCTCAGTTTCTATCAGTCCTATGCAGAACATGCTGGGTTCCTTG
CCTGAAGGGAGTGGCAATCTTTTGAACTTCTCAGGAGCTGGTCCATCTAT
GCTGAGGCAGCAGTTTCCCCAACAATCGTTGGGTTCTAAGTATGAACCTT
CACAGGTCTATAAATCGGGTTCGGTTGGGCGCTCACTAGACATCTCCCGG
TTCAGCAGCTATAATGAGCTGCGGGAAGAGCTGGGTCAGATGTTTGGAAT
TGAGGGGAAGTTTGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCG
TCGACAGGGAGAATGACGTGCTTCTCCTTGGAGACGACCCATGGGAGTAA
GTGACCGTCATGATTTTCCAGATTTTTTATTCAACTTAACTTGTGTGTTA
AGATTTGTCTCCTACTGCTTGTTTTATGCTTGGTATACATCTGGTCAGGA
TTGCTAGCATCACTTCCTTTTATATGTAGATTTCGAAGTTCCAGACCATC
AGATGAAAGCCCTTTGAGTTACTGAGATTGCATTTAACACGTGTCTTTAT
TAAGGTGCATCAATTATACCTGTCAAATACAATCTGTCAGTAAATTGCTA
AATTTTGAAAAATATATAATCTGTCATTTAAATTGCTTTATTTTCAAAAA
CTGTCAACTACAACCTGGCAGTTAAATTTGCTTATTTTTGAAACCCAATG
ACCTAATATTTGTGAAATTGTGACAATTTTTTAAACCATAAATTCATGAA
TATTGAAAATCCCCTCGGGGGGTGCCTTTTAATTGAATTTACCCCGGCAT
TCCAGTTCCCTTTTGCAAAGGCAATCCTTAAAAAGGGGAAATCATTTGCT
TCTTATAATTTTTTGGTTGGTTCTTTGGGTTTCTTTTTTCCAAATTTTGT
TCTTCCCAAAACCCGGGTTAAAAACAAAAAAAAACAATTTGGGTGTGTAA
GAGAAATGACATTTTGCCCCAATTTTTATCTCCCCTTTTCCCCCTAAGGA
GACACCCCCCATAACACAGGAAAACCCTTTTTTGGGGGCGGGGCCTTTTT
TTGTTGAGAAAATAAAGGTTTTGTTGGGCGTCAATATACCACACAAAAAA
AATACTCTTTCTCCCC
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