DY258868

Overview
NameDY258868
Unique NameDY258868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1140
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: DAPL_STRT1 (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=dapL PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.250e-29
Identity = 77/218 (35.32%), Postives = 115/218 (52.75%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALIRRELDKL--GIPYAYPVA-KTGIVAQI-GSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGD--SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADP 771
            L+ +RR +H+ PE+  EE  T A +   + ++  G  +      +TGI+  + GS     +  R D+D LP+ E    + KS  +G+MHACGHD+H T  LG    + Q + K    +  LFQPAEE  AG   M ++GA GD   +  +G+H+      G IA+ +    A T    V  +G+GGHAA PH   D ++ AS  I  +Q ++SR  DP
Sbjct:    5 LIKIRRDLHQIPEIGLEEFKTQAYLLERIAEMTEGKDFVEQRTWRTGILVFLHGSAPEKTIGWRTDIDGLPIVEETGLDFKSIHEGRMHACGHDIHMTTALGLLDQMLQVQPK--NNMLFLFQPAEENEAGGMLMYEDGAFGDWLPDEFYGLHVRPDFKVGDIATNTNTLFAGTCEVLVTFKGKGGHAAFPHEANDALVAASYFITQVQTIVSRNVDP 220          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: DAPL_STRGC (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=dapL PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 5.012e-29
Identity = 77/218 (35.32%), Postives = 115/218 (52.75%), Query Frame = 1
Query:  139 VSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKT---GIVAQI-GSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEG-TVRILFQPAEEGGAGAFHMIKEGALGD--SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADP 771
            + +RR +H+ PE+  EE+ T A + + ++ L     +   +T   GI+  I GS     +  R D+D LP+ E    +  S  +G+MHACGHD+H T+ LG   LL Q         +  LFQPAEE  AG   M ++GA GD   +  +G+H+   +  G IA+  G   A T    +  +G+GGHAA PH   D ++ AS  I  +Q ++SR  DP
Sbjct:    5 LKIRRDLHQIPEIGLEEYKTHAYLMQVIEGLTADLDFVEIRTWRTGILVFIKGSSPYKTIGWRTDIDGLPIVEETGLDFASTHEGRMHACGHDMHMTVALG---LLEQALSAQPNHNLLFLFQPAEENEAGGMLMYEDGAFGDWLPDEFYGLHVRPDLKVGDIATNRGTLFAGTCEVKLTFKGKGGHAAFPHEANDALIAASYFITQVQTIVSRNVDP 219          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: DAPL_LACAC (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus acidophilus GN=dapL PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 6.546e-29
Identity = 74/222 (33.33%), Postives = 112/222 (50.45%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALIRRELDKLG-------IPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGDS---EAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADP 771
            L+ +RR +HE PEL  +E  T   + + +  L        +P   P A  G+V   G   +  +  R D+DALP+QE       SK  G MHACGHD+H T+ LG      + + K    +   FQPAEE  +G     ++G        +  +G+H +  +P GSI    G   A T+  N+ V G+ GHAA P +  D ++ A+++I+ +Q +ISR  DP
Sbjct:    9 LIQIRRHLHEIPELALQEKETHDYLLKVIKNLKQDHLTIVVPKTLPTAILGLVK--GINPKKTIGYRTDIDALPVQEKTGLPFTSKHSGIMHACGHDIHMTVALGLLSYFSENQPK--DNLLFFFQPAEESESGGKQAYEKGLFQGKFKPDEFYGLHDNPELPAGSIGCRMGTLFAGTTEINIDVIGKSGHAAFPQNANDTVVAAANLIMQIQTIISRSIDP 226          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: DAPL_STRMU (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus mutans GN=dapL PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 8.549e-29
Identity = 77/219 (35.16%), Postives = 119/219 (54.34%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALIRRELDKL--GIPYAYPVA-KTGIVAQIGSGSRP--VVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGD--SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADP 771
            L+ +RR +H+ PE+  EE  T A +   + ++  G  +      +TGI+  +  GSRP   +  R D+DALP+ E       S+ +G+MHACGHD+H T+ LG    + Q + K    +  LFQPAEE  AG   M ++GA G+   +  +G+H+      G IA+ +    A T    +  +G+GGHAA PH+  D ++ AS  I  +Q ++SR  DP
Sbjct:    5 LIKIRRDLHQIPEIGLEEFKTQAYLLERIAEITNGKDFVEQRTWRTGILVFL-KGSRPQKTIGWRTDIDALPVVEETGLAFASQHEGRMHACGHDMHMTIALGLLDTMVQVQPK--NNLLFLFQPAEENEAGGMLMYEDGAFGNWQPDEFYGLHVRPDFKVGDIATNTSTLFAGTCEVFITFKGKGGHAAFPHNANDALVAASYFITQVQTIVSRNVDP 220          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: DAPL_STRSY (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus suis (strain 05ZYH33) GN=dapL PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.458e-28
Identity = 73/218 (33.49%), Postives = 116/218 (53.21%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVA---KTGIVAQI-GSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGD--SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADP 771
            L++ RR +H+ PEL  EE  T A +   ++ L    ++      KTGI+  + GS     +  RAD+D LP+ E    + KS    +MHACGHD H T+ LG  + + +++ +    +  LFQPAEE  AG   M + GA GD   +  +G+H+   +  G +A+      A T    ++  G+GGHAA P++  D ++ AS  +  +Q ++SR  DP
Sbjct:    4 LIATRRALHQIPELGMEEFKTHAFLMETIEGLLQDCSFAQVRTWKTGILVYLTGSAPEKTIGWRADIDGLPIVEETGLDFKSLHPDRMHACGHDFHMTIALGLLEKMAEQQPR--NNLLFLFQPAEENLAGGMLMYEAGAFGDWLPDEFYGLHVRPDLKVGQMATNRATLFAGTCEVKIRFTGKGGHAAFPYTANDALVAASYFVTQVQSVVSRNVDP 219          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: DAPL_STRS2 (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus suis (strain 98HAH33) GN=dapL PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.458e-28
Identity = 73/218 (33.49%), Postives = 116/218 (53.21%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVA---KTGIVAQI-GSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGD--SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADP 771
            L++ RR +H+ PEL  EE  T A +   ++ L    ++      KTGI+  + GS     +  RAD+D LP+ E    + KS    +MHACGHD H T+ LG  + + +++ +    +  LFQPAEE  AG   M + GA GD   +  +G+H+   +  G +A+      A T    ++  G+GGHAA P++  D ++ AS  +  +Q ++SR  DP
Sbjct:    4 LIATRRALHQIPELGMEEFKTHAFLMETIEGLLQDCSFAQVRTWKTGILVYLTGSAPEKTIGWRADIDGLPIVEETGLDFKSLHPDRMHACGHDFHMTIALGLLEKMAEQQPR--NNLLFLFQPAEENLAGGMLMYEAGAFGDWLPDEFYGLHVRPDLKVGQMATNRATLFAGTCEVKIRFTGKGGHAAFPYTANDALVAASYFVTQVQSVVSRNVDP 219          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: DAPL_LISIV (Putative N-acetyldiaminopimelate deacetylase OS=Listeria ivanovii GN=dapL PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.458e-28
Identity = 79/223 (35.43%), Postives = 122/223 (54.71%), Query Frame = 1
Query:  124 DKDWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAK---TGIVAQIGSGSRPV--VALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGD--SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADP 771
            D +  +S+RR++H+ PE  ++E  T A +   ++KL  P  Y   K   TG++ ++ SG+ P   +  R D+DALP+ E      +SK  G MHACGHD+H ++ LG   L H      +  +  +FQPAEEG  GA  +++     +   ++I+G+HI      G IA   G   A TS   +  +G+GGHAA PH   D ++ AS+ +  +Q +ISR  DP
Sbjct:    2 DLNQFISIRRELHQIPETGYKEWKTQAYLLDYINKL--PSRYLEVKKWRTGLLVRV-SGTSPTKTIGYRTDIDALPITEETGLAFESKHAGNMHACGHDLHMSIALGV--LTHFASKPAKDNLLFVFQPAEEGPGGAKPIMESAEFAEWRPDSIYGLHIAPEYKVGQIAIKPGLLFANTSELFISFKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDP 219          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: DAPL_BREBN (Putative N-acetyldiaminopimelate deacetylase OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=dapL PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.458e-28
Identity = 78/214 (36.45%), Postives = 115/214 (53.74%), Query Frame = 1
Query:  145 VRRQIHENPELLFEEHNTSALIRRELDKLGIP-YAYPVAKTGIVAQIGSGSRP--VVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGD--SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADP 771
            +RR +H+ PE  F E  T   +   L KL          +TGI+ ++ +G++P  ++A R DMD LP+ E   +  +S  +G MHACGHD+H  + LG   L H  +  +   +  LFQPAEEG  GA+ M++     +   + IF +HI    P G IA+  G   A TS   + + G+GGHAA PH   D ++  S ++  LQ +ISR  DP
Sbjct:    9 IRRDLHQIPEPGFAEVKTQQYLLDYLKKLPQERIEIKTWRTGILVKL-AGTKPKRLIAWRTDMDGLPIVEETSYPFRSLHEGYMHACGHDMHMAIALGL--LTHFTEHSIADDLLFLFQPAEEGPGGAWPMMESEEFAEWRPDCIFALHIAPEYPVGQIATKPGILFANTSELYIDLVGKGGHAAFPHKANDMVVAGSHLVTQLQSIISRNIDP 219          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: DAPL_STRP7 (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus pneumoniae (strain 70585) GN=dapL PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.905e-28
Identity = 74/219 (33.79%), Postives = 115/219 (52.51%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKT---GIVAQIGSGSRP--VVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGD--SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADP 771
            L+  RR +H+ PE+  EE  T A +   ++KL     +   +T   GI+  +  GS+P   +  R D+D LP+ E       S+  G+MHACGHD H T+ LG  +   + + K    +  LFQPAEE  AG   M ++GA GD      +G+H+   +  G IA+ +    A T    ++ +G+GGHAA PH   D ++ AS  +  +Q ++SR  +P
Sbjct:    4 LIQTRRDLHQIPEIGLEEFKTQAYLLDVIEKLTTGKDFVQIRTWRTGILVYL-QGSQPERTIGWRTDIDGLPIVEQTGLPFASQHQGRMHACGHDFHMTIALGCLERALEEQPK--NNLLFLFQPAEENEAGGMLMYEDGAFGDWLPNQFYGLHVRPDLKVGQIATNTHTLFAGTCEVKIRFKGKGGHAAFPHEANDALVAASYFVTQVQSVVSRNVNP 219          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: DAPL_STRP4 (Putative N-acetyldiaminopimelate deacetylase OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=dapL PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.905e-28
Identity = 74/219 (33.79%), Postives = 116/219 (52.97%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKT---GIVAQIGSGSRP--VVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGD--SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADP 771
            L+  RR +H+ PE+  EE  T A +   ++KL     +   +T   GI+  +  GS+P   +  R D+D LP+ E       S+  G+MHACGHD H T+ LG  +   + + K    +  LFQPAEE  AG   M ++GA GD   +  +G+H+   +  G IA+ +    A T    ++ +G+GGHAA PH   D ++ AS  +  +Q ++SR  +P
Sbjct:    4 LIQTRRDLHQIPEIGLEEFKTQAYLLDVIEKLTTGKDFVQIRTWRTGILVYL-QGSQPERTIGWRTDIDGLPIVEQTGLLFASQHQGRMHACGHDFHMTIALGCLERALEEQPK--NNLLFLFQPAEENEAGGMLMYEDGAFGDWLPDQFYGLHVRPDLKVGQIATNTHTLFAGTCEVKIRFKGKGGHAAFPHEANDALVVASYFVTQVQSVVSRNVNP 219          
The following BLAST results are available for this feature:
BLAST of DY258868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
DAPL_STRT12.250e-2935.32Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_STRGC5.012e-2935.32Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_LACAC6.546e-2933.33Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_STRMU8.549e-2935.16Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_STRSY1.458e-2833.49Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_STRS21.458e-2833.49Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_LISIV1.458e-2835.43Putative N-acetyldiaminopimelate deacetylase OS=Li... [more]
DAPL_BREBN1.458e-2836.45Putative N-acetyldiaminopimelate deacetylase OS=Br... [more]
DAPL_STRP71.905e-2833.79Putative N-acetyldiaminopimelate deacetylase OS=St... [more]
DAPL_STRP41.905e-2833.79Putative N-acetyldiaminopimelate deacetylase OS=St... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3DC12FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258868 ID=DY258868; Name=DY258868; organism=Citrus clementina; type=EST; length=1140bp
CAACGGATTGTTATTGAGATGGCGATTGCCTTTTTGCTTCTTCTACTACC
GATCACTTATCTCACTACGACCACAGCAGTTGATGAAATACTTACAAATC
AAGTTATGATATCAGCTCAACAAGATAAAGATTGGCTAGTCTCTGTAAGA
AGACAAATCCATGAAAACCCGGAACTGCTATTCGAAGAACACAACACAAG
TGCCCTCATTCGCAGAGAACTTGATAAACTTGGAATCCCTTATGCATACC
CAGTCGCCAAAACAGGCATTGTAGCACAGATTGGCTCTGGTTCTCGCCCT
GTCGTCGCGTTGAGAGCTGACATGGATGCTCTCCCTTTGCAAGAGCTCGT
GGAATGGGAGCATAAGAGCAAAATTGATGGCAAAATGCACGCATGTGGAC
ATGACGTCCACACCACCATGCTTCTTGGTGCTGCCAAGTTGCTTCATCAA
CGTAAAGATAAACTTGAGGGAACTGTGAGAATTCTTTTCCAACCTGCTGA
GGAGGGAGGTGCAGGTGCCTTTCACATGATAAAAGAAGGCGCTCTTGGTG
ACTCTGAAGCAATATTTGGAATGCATATTGACGTAGGAATACCTACAGGA
AGTATAGCATCAATTTCTGGGCCACACTTGGCTGCTACATCCGTTTTTAA
TGTTAAAGTAGAGGGAAGAGGCGGACATGCTGCAATGCCCCATTCAACAA
TCGATCCTATACTTACTGCTTCATCTGTGATATTGGCATTGCAGCAACTT
ATTTCAAGAGAAGCAGATCCCCTCCAAAGTCTAGTATGTCTCAGTCTCCT
TTTATCAATTTATTCTGAAACCTGTGAACTTTTGCCATTGAAAGCATGAA
GAATTCTCCATTTCACTCTTAATAATTTTTACTGGAATTTTTACTGCTTG
AATGATTGCAAAGAAAAACTTGAAGTGAATATATCATTGGGTGAACTAAA
TACTAGTTTGGCTTTGGGCTGAAAGGGGGTTTCCTGTTACTTAAGTTTAA
AAGGGGGGAACTGGATTTTTAATAAAAATTCCCCCCTTTTGTTGGAATTT
TGGAAGGCCCTTTTGAGGAGATTCTTACAAACTTGGAGGGGCTTTTTATC
CCACCTCCCAAAAAAAAGGGGTGGGAAGGGAAGGGGTTGT
back to top