DY258868

Overview
NameDY258868
Unique NameDY258868
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1140
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: DAPL_LACH4 (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus helveticus (strain DPC 4571) GN=dapL PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 6.127e-27
Identity = 70/222 (31.53%), Postives = 112/222 (50.45%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALIRR-------ELDKLGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGDS---EAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADP 771
            L+ +RR +HE PEL  +E  T   + +       E   + +P   P A   ++   GS  +  +  R D+DALP++E       S   G MHACGHD+H ++ LG      + + K    +   FQPAEE  +G     ++G        +  +G+H +  +P G+I    G   A T+  N+ + G+GGHAA P +  D ++ A+S+I+ +Q +ISR  DP
Sbjct:    9 LIQIRRHLHEIPELALQEKETHDYLLKIIKGFNSEFLTIKVPEELPTAILVLIK--GSNPQRTIGYRTDIDALPVEEKTNLPFSSTHPGIMHACGHDIHMSVALGLLSYFSENQPK--DNLLFFFQPAEESESGGKKAYEDGIFEGKFRPDEFYGLHDNPELPAGAIGCREGTLFAGTTEVNIDLIGKGGHAAFPQNANDTVVAAASLIMQIQTVISRSIDP 226          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: DAPL_PEDPA (Putative N-acetyldiaminopimelate deacetylase OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=dapL PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 8.002e-27
Identity = 78/223 (34.98%), Postives = 112/223 (50.22%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSAL----IRRELDKLGIPYAYPVAKTGIVAQIGSGSRP--VVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLL--HQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGDS---EAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADP 771
            LV +RRQ HE+PEL  +E  T AL    IR     L      P   T ++ ++ +GS P   +  RAD+DALP+ E    +  SK  G MHACGHD+H T+ LG  +    HQ +D L       FQPAEE  +G+          +       +G+H    +P G I    G   A T+  N+K+ G+GGHAA P    D ++  + +I  LQ +++R  +P
Sbjct:    8 LVRIRRQFHESPELALKEFQTHALLLSVIRSLPQNLLEIKTIPELPTALLVRV-AGSHPHRTIGYRADIDALPVNEKTGLDFASKTPGIMHACGHDIHMTVALGILEYFANHQPQDNL----IFFFQPAEESHSGSVRAFNANIFTNQFRPNEFYGLHSTPTLPAGVIGCRMGTLFAGTTEVNLKLTGKGGHAAYPQDANDMVVAQAYLITQLQTIVARNVNP 225          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: Y1078_STAES (Uncharacterized hydrolase SE_1078 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1078 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.365e-26
Identity = 73/183 (39.89%), Postives = 99/183 (54.10%), Query Frame = 1
Query:  148 RRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDK--LEGTVRILFQPAEEGGAGAFHMIKEGALG--DSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAA 684
            RR +H+ PEL   E  T++ I   L+ LG+PY  P+ KTG++A +   S   +A RAD+DALP+ E  + + KSK D  MHACGHD HTT L+   K      DK  L   V  +FQPAEE G GA  +IK GA      EA+FG H++     G I        A+ + +   ++G   H A
Sbjct:   11 RRHLHQYPELSLHEFETTSYITSFLEDLGVPYDRPL-KTGVIAYLEGNSHHTIAFRADIDALPIYEENDIDFKSKNDNVMHACGHDGHTTALMLFVKRCKALYDKSELPHNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGFHVNPFEKEGKIVIRDEEITASATEYRFFLKGLSSHVA 192          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: DAPL_LACCB (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus casei (strain BL23) GN=dapL PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.365e-26
Identity = 78/224 (34.82%), Postives = 116/224 (51.79%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAY------PVAKTGIVAQI-GSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLL--HQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGAL-GD--SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADP 771
            L+++RRQ+H+ PEL  +E  T AL+ + +   G+P  Y      P   T ++ ++ G   +  +  R D+DALP+ E       SK  G  HACGHD+H T+ LG       HQ KD L       FQPAEE   G       GA  GD   +  +G+H    +P G+I++  G   A T+  NV + G+ GHAA+P +  D I+ A+S I  +Q +++R   P
Sbjct:    6 LITLRRQLHQIPELALQEKETHALLLKTIQ--GLPQTYLTIRTLPDLPTALLVKVQGRDPQRTIGYRTDIDALPVTEKTGLPFASKHSGIAHACGHDIHMTVALGILSYFAEHQPKDNLI----FFFQPAEESKNGGKLAYDMGAFTGDWHIDEFYGLHDRPDLPAGTISTRLGTLFAGTTEINVDLIGKSGHAALPQNANDMIVAAASFISQIQTVVARNVGP 223          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: DAPL_LACC3 (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus casei (strain ATCC 334) GN=dapL PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.365e-26
Identity = 78/224 (34.82%), Postives = 116/224 (51.79%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAY------PVAKTGIVAQI-GSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLL--HQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGAL-GD--SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADP 771
            L+++RRQ+H+ PEL  +E  T AL+ + +   G+P  Y      P   T ++ ++ G   +  +  R D+DALP+ E       SK  G  HACGHD+H T+ LG       HQ KD L       FQPAEE   G       GA  GD   +  +G+H    +P G+I++  G   A T+  NV + G+ GHAA+P +  D I+ A+S I  +Q +++R   P
Sbjct:    6 LITLRRQLHQIPELALQEKETHALLLKTIQ--GLPQTYFTIRTLPDLPTALLVKVQGRDPQRTIGYRTDIDALPVTEKTGLPFASKHSGIAHACGHDIHMTVALGILSYFAEHQPKDNLI----FFFQPAEESKNGGKLAYDMGAFTGDWHIDEFYGLHDRPDLPAGTISTRLGTLFAGTTEINVDLIGKSGHAALPQNANDMIVAAASFISQIQTVVARNVGP 223          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: DAPL_LISIN (Putative N-acetyldiaminopimelate deacetylase OS=Listeria innocua GN=dapL PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.783e-26
Identity = 73/215 (33.95%), Postives = 113/215 (52.56%), Query Frame = 1
Query:  139 VSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYA-YPVAKTGIVAQI-GSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGD--SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADP 771
            +++RR +H+ PE  ++E  T A +   + KL   +      +TGI+  + G+     +  R D+DALP+ E      +SK  G MHACGHD+H ++ LG   L H      +  +  +FQPAEEG  GA  +++     +   + I+G+HI      G IA   G   A TS   +  +G+GGHAA PH   D ++ AS+ +  +Q +ISR  DP
Sbjct:    6 IAIRRDLHQIPETGYKELKTQAYLLDYISKLPNEFLEIKKWRTGILVLVKGTNPGKTIGYRTDIDALPITEETGLPFESKHAGNMHACGHDLHMSIALGV--LTHFASKPAKDNLLFVFQPAEEGPGGAKPIMESAEFSEWRPDTIYGLHIAPEYKVGQIAIKPGLLFANTSELFISFKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDP 218          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: Y968_STAEQ (Uncharacterized hydrolase SERP0968 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP0968 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.328e-26
Identity = 73/183 (39.89%), Postives = 99/183 (54.10%), Query Frame = 1
Query:  148 RRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDK--LEGTVRILFQPAEEGGAGAFHMIKEGALG--DSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAA 684
            RR +H+ PEL   E  T++ I   L+ LG+PY  P+ KTG++A +   S   +A RAD+DALP+ E  + + KSK D  MHACGHD HTT L+   K      DK  L   V  +FQPAEE G GA  +IK GA      EA+FG H++     G I        A+ + +   ++G   H A
Sbjct:   11 RRHLHQYPELSLHEFETTSYITSFLEDLGVPYDRPL-KTGVIAYLEGNSHHTIAFRADIDALPIYEENDIDFKSKNDHVMHACGHDGHTTALMLFVKRCKALYDKSELPHNVVFIFQPAEETGGGANRLIKAGAFDKYPIEAVFGFHVNPFEKEGKIVIRDEEITASATEYRFFLKGLSSHVA 192          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: Y1513_STAHJ (Uncharacterized hydrolase SH1513 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH1513 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.328e-26
Identity = 73/213 (34.27%), Postives = 116/213 (54.46%), Query Frame = 1
Query:  130 DWLVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLLHQRKDK--LEGTVRILFQPAEEGGAGAFHMIKEGALGD--SEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAA---MPHSTIDPILTASSVILALQQ 747
            +++   RR +H++PEL   E  T+  I + L++LG+ Y  P+ +TG +A +   S   +A RAD+DALP+ E  + +++S+ D  MHACGHD HTT L+   K   +  DK  L   V  +FQPAEE G GA  +IK GA  +   EA+FG+H++     G +        A+ + +   ++G   H A     HS  + +L   + +  +QQ
Sbjct:    5 EFVTKHRRHLHQHPELSLHEFETTKYITQFLEELGVSYERPL-ETGAIAYLNGNSDHTIAFRADIDALPIFEENDVDYRSQTDNVMHACGHDGHTTALMLFVKRCKEMFDKGTLPHNVVFIFQPAEETGGGANRLIKAGAFNNYPIEAVFGIHVNPFADEGQVVIRDEEITASATEYRFFLKGLSSHVADKEQGHSCGEALLHVLNQVGQIQQ 216          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: DAPL_LEUMM (Putative N-acetyldiaminopimelate deacetylase OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=dapL PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.328e-26
Identity = 72/222 (32.43%), Postives = 113/222 (50.90%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALIRRELDK-----LGIPYAYPVAKTGIVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLL--HQRKDKLEGTVRILFQPAEEGGAGAFHMIKEGALGDS---EAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADP 771
            L + RR +H+ PEL   E  T   +  ++       + I     +    +V   G+     V  RAD+DALP+ E      +S   G MHACGHDVH ++ LG  +    HQ KD L     + FQPAEE  +G    +  G        +  +G+H    +P G++++++G   A T+   + + G+GGHAA PH   DPI+ ++ +I+ LQ ++SR+ DP
Sbjct:    8 LKTYRRDLHKIPELALAEFKTHRYLLEKIQSWQTNFMTIRQVEELPTAMLVKFSGTDPSRTVGYRADIDALPVTEDTGLPFESTHKGVMHACGHDVHMSLALGLVQYFSEHQPKDNLI----VFFQPAEESKSGGKLAVDLGIFEGEWHPDEFYGIHDQPNLPAGTLSTLAGTLFAGTAELEIDIHGQGGHAAYPHLGKDPIVISAELIMLLQTVVSRDVDP 225          
BLAST of DY258868 vs. ExPASy Swiss-Prot
Match: DAPL_LACRJ (Putative N-acetyldiaminopimelate deacetylase OS=Lactobacillus reuteri (strain JCM 1112) GN=dapL PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.328e-26
Identity = 73/224 (32.59%), Postives = 113/224 (50.45%), Query Frame = 1
Query:  136 LVSVRRQIHENPELLFEEHNTSALIRRELDKLGIPYAYPVAKTG-------IVAQIGSGSRPVVALRADMDALPLQELVEWEHKSKIDGKMHACGHDVHTTMLLGAAKLL--HQRKDKLEGTVRILFQPAEE---GGAGAFHMIKEGALGDSEAIFGMHIDVGIPTGSIASISGPHLAATSVFNVKVEGRGGHAAMPHSTIDPILTASSVILALQQLISREADP 771
            L+ +RR +H+ PEL  +E +T   +   +   G   A+   +T        +V   G   +  +  R D+DALP++E     + S   G MHACGHD+H T+ LG       HQ +D     +   FQPAEE   GG  A+ +         +  +G+H +  +P G+I    G   A T+  N+ + G+GGHAA P +  D ++ A+S+IL +Q +ISR  DP
Sbjct:    7 LIQIRRHLHQIPELALQEFDTHQYLVETI--AGFNQAFLEVRTFKELPTALMVLVHGKNPQRTIGYRTDIDALPVEEQTGLPYSSTHPGVMHACGHDIHMTVALGVLNYFSEHQPQDN----ILFFFQPAEESENGGKRAYELGLFSGKWKPDEFYGLHDNPDLPAGAIGCRMGTLFAGTTEVNIDLNGKGGHAAYPQNANDTVVAAASLILQVQTVISRSIDP 224          
The following BLAST results are available for this feature:
BLAST of DY258868 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
DAPL_LACH46.127e-2731.53Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_PEDPA8.002e-2734.98Putative N-acetyldiaminopimelate deacetylase OS=Pe... [more]
Y1078_STAES1.365e-2639.89Uncharacterized hydrolase SE_1078 OS=Staphylococcu... [more]
DAPL_LACCB1.365e-2634.82Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_LACC31.365e-2634.82Putative N-acetyldiaminopimelate deacetylase OS=La... [more]
DAPL_LISIN1.783e-2633.95Putative N-acetyldiaminopimelate deacetylase OS=Li... [more]
Y968_STAEQ2.328e-2639.89Uncharacterized hydrolase SERP0968 OS=Staphylococc... [more]
Y1513_STAHJ2.328e-2634.27Uncharacterized hydrolase SH1513 OS=Staphylococcus... [more]
DAPL_LEUMM2.328e-2632.43Putative N-acetyldiaminopimelate deacetylase OS=Le... [more]
DAPL_LACRJ2.328e-2632.59Putative N-acetyldiaminopimelate deacetylase OS=La... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DC12FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258868 ID=DY258868; Name=DY258868; organism=Citrus clementina; type=EST; length=1140bp
CAACGGATTGTTATTGAGATGGCGATTGCCTTTTTGCTTCTTCTACTACC
GATCACTTATCTCACTACGACCACAGCAGTTGATGAAATACTTACAAATC
AAGTTATGATATCAGCTCAACAAGATAAAGATTGGCTAGTCTCTGTAAGA
AGACAAATCCATGAAAACCCGGAACTGCTATTCGAAGAACACAACACAAG
TGCCCTCATTCGCAGAGAACTTGATAAACTTGGAATCCCTTATGCATACC
CAGTCGCCAAAACAGGCATTGTAGCACAGATTGGCTCTGGTTCTCGCCCT
GTCGTCGCGTTGAGAGCTGACATGGATGCTCTCCCTTTGCAAGAGCTCGT
GGAATGGGAGCATAAGAGCAAAATTGATGGCAAAATGCACGCATGTGGAC
ATGACGTCCACACCACCATGCTTCTTGGTGCTGCCAAGTTGCTTCATCAA
CGTAAAGATAAACTTGAGGGAACTGTGAGAATTCTTTTCCAACCTGCTGA
GGAGGGAGGTGCAGGTGCCTTTCACATGATAAAAGAAGGCGCTCTTGGTG
ACTCTGAAGCAATATTTGGAATGCATATTGACGTAGGAATACCTACAGGA
AGTATAGCATCAATTTCTGGGCCACACTTGGCTGCTACATCCGTTTTTAA
TGTTAAAGTAGAGGGAAGAGGCGGACATGCTGCAATGCCCCATTCAACAA
TCGATCCTATACTTACTGCTTCATCTGTGATATTGGCATTGCAGCAACTT
ATTTCAAGAGAAGCAGATCCCCTCCAAAGTCTAGTATGTCTCAGTCTCCT
TTTATCAATTTATTCTGAAACCTGTGAACTTTTGCCATTGAAAGCATGAA
GAATTCTCCATTTCACTCTTAATAATTTTTACTGGAATTTTTACTGCTTG
AATGATTGCAAAGAAAAACTTGAAGTGAATATATCATTGGGTGAACTAAA
TACTAGTTTGGCTTTGGGCTGAAAGGGGGTTTCCTGTTACTTAAGTTTAA
AAGGGGGGAACTGGATTTTTAATAAAAATTCCCCCCTTTTGTTGGAATTT
TGGAAGGCCCTTTTGAGGAGATTCTTACAAACTTGGAGGGGCTTTTTATC
CCACCTCCCAAAAAAAAGGGGTGGGAAGGGAAGGGGTTGT
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