DY258881

Overview
NameDY258881
Unique NameDY258881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DDX21_HUMAN (Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 PE=1 SV=5)

HSP 1 Score: 173.711 bits (439), Expect = 7.671e-43
Identity = 96/228 (42.11%), Postives = 137/228 (60.09%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQNRQGMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 668
            P  LVLAPTRELA QV K+F +    L   C YGGTP   Q   +  G+D +VGTPGR+ D I+   L+L++++ VVLDE DQML +GFA+ VE IL     +    N Q ++FSAT P W+ ++  KY+K+    VDL+G   QK A  +   +I     ++ ++IG +I  ++   G+ I+F +TK++A  L+   A   + + LHGDI Q QRE TL  FR+G F
Sbjct:  261 PQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSF 488          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DDX50_HUMAN (ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.002e-42
Identity = 96/229 (41.92%), Postives = 137/229 (59.83%), Query Frame = 3
Query:    3 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQNRQGMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 668
            +P  LVLAPTRELA QV K+F +    L   C YGGT    Q+  +  G+D +VGTPGR+ D ++   L+LS+++ VVLDE DQML +GFAE VE I+          N Q ++FSAT P W+  +  KY+K+    VDLVG   QK A  +   +I     ++P++IG ++  ++   G+ I+F +TK++   +A       N + LHGDI+QSQRE TL  FR+G F
Sbjct:  211 SPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSF 439          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH7_ORYSJ (DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica GN=Os09g0520700 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.308e-42
Identity = 96/226 (42.48%), Postives = 143/226 (63.27%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ--NRQGMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 668
            P  LVL PTRELAKQV  +F  + +   L   CVYGG+    Q  A+  GVD VVGTPGRV D +++  LN   ++F VLDEAD+ML++GF +DVE+IL ++      Q ++FSAT+P W++ L+ ++LK+   TVDLVGD   K +  +   ++  +   +  +I  +I  +++GG+ I+FT+TK  A  L+  +A S     LHGD++Q+QRE  L+ FR G+F
Sbjct:  194 PTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDYRSQEMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILGKVEDVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASVRHLALPCNRAARAQVIPDIIRCYSRGGRTIIFTETKESASDLSGLIAGS---RALHGDVAQAQREVILAGFRSGKF 416          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH7_ARATH (DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis thaliana GN=RH7 PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.468e-41
Identity = 97/227 (42.73%), Postives = 143/227 (63.00%), Query Frame = 3
Query:    3 NPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR--QGMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 668
            +P  LVL PTRELAKQV  +F     SL   + C+YGG     Q   L  GVD VVGTPGR+ D I+R  L+ S +QF VLDEAD+ML +GF EDVE+IL ++  +   Q ++FSAT+P W+++++N++LK +  T+DLVG+   K ++ +   +I  +      +I  +I+ ++ GG+ I+F +TK     L+  +  S     LHG+I QSQRE TL+ FR+G+F
Sbjct:  174 SPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDGS---RALHGEIPQSQREVTLAGFRNGKF 397          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH14_ORYSJ (DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica GN=Os01g0172200 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.377e-41
Identity = 88/223 (39.46%), Postives = 138/223 (61.88%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 665
            P  LVL+PTRELA Q++ E  +   S  + ++C+YGG P   Q+R L+ G D VV TPGR+ D+++   ++L +V ++VLDEAD+ML +GF   +  I++++   RQ +MF+AT P  +R + +  L NP+ V+ +G++DQ +A+  I  Y    +  EK   + Q++     G K I+F  TKR  D+LA  +A+ Y    +HGD SQ++R+  LS FR GR
Sbjct:  253 PTVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKEVRKIASDLLSNPVQVN-IGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQEPGSKIIIFCSTKRMCDQLARNLARQYGASAIHGDKSQAERDSVLSEFRSGR 474          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH40_ORYSJ (DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 8.777e-39
Identity = 86/223 (38.57%), Postives = 134/223 (60.09%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSI-ATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 665
            P  LVLAPTRELA Q+ +E  +   S  + + C+YGG P   Q+R LD GVD VV TPGR+ D+++   ++L +V ++VLDEAD+ML +GF   +  I++ +P  RQ +M++AT P  +R +    L +P+ V  +G  D+ +A+     ++   +  EK   + Q++     G K ++F  TKR  D+LA  + + +    +HGD SQS+RE+ LS FR GR
Sbjct:  223 PTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRRQTLMYTATWPKEVRRIAEDLLVHPVQV-TIGSVDELVANSAITQNVELITPSEKLRRLEQILRSQDSGSKVLIFCTTKRMCDQLARTLTRQFGASAIHGDKSQSEREKVLSHFRSGR 444          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH46_ARATH (DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana GN=RH46 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.687e-37
Identity = 83/223 (37.22%), Postives = 134/223 (60.09%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSI-ATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 665
            P  LVL+PTRELA Q++ E  +   S  +   C+YGG P   Q++ ++ GVD VV TPGR+ D+++   ++L +V ++VLDEAD+ML +GF   +  I+  +P  RQ +M++AT P  +R +    L NP  V+ +G+ D+ +A+     +I   +  EK S + Q++     G K I+F  TKR  D+LA  + +++    +HGD SQ++R+  L+ FR GR
Sbjct:  234 PTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVN-IGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFCSTKRMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGR 455          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH14_ARATH (DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana GN=RH14 PE=1 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 6.290e-37
Identity = 81/223 (36.32%), Postives = 131/223 (58.74%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 665
            P  LVL+PTRELA Q+++E  +   S  +   C+YGG P   Q+R L+ G D VV TPGR+ D+++   ++L ++ ++VLDEAD+ML +GF   +  I++ +P  RQ +M++AT P  +R +    L NP  V+ +G+ D+ +A+  I  +    +  EK   + Q++     G K I+F  TKR  D+L   + + +    +HGD SQ +R+  L+ FR GR
Sbjct:  231 PTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVN-IGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGR 452          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: EXP9_STRR6 (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=exp9 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.290e-37
Identity = 88/222 (39.64%), Postives = 137/222 (61.71%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671
            LV+APTRELA Q ++E      S  +    VYGG+ I  Q++AL  G   VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+NRQ ++FSATMP  I+ +  +++K P  V +   + +   + +  Y I     EK   + +L+ + A+    IVF +TKR  D L   +  + +  E +HGD+ Q++R R L  F++G  +
Sbjct:   73 LVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTRLM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: EXP9_STRPN (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae GN=exp9 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.290e-37
Identity = 88/222 (39.64%), Postives = 137/222 (61.71%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671
            LV+APTRELA Q ++E      S  +    VYGG+ I  Q++AL  G   VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+NRQ ++FSATMP  I+ +  +++K P  V +   + +   + +  Y I     EK   + +L+ + A+    IVF +TKR  D L   +  + +  E +HGD+ Q++R R L  F++G  +
Sbjct:   73 LVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTRLM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291          
The following BLAST results are available for this feature:
BLAST of DY258881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX21_HUMAN7.671e-4342.11Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 ... [more]
DDX50_HUMAN1.002e-4241.92ATP-dependent RNA helicase DDX50 OS=Homo sapiens G... [more]
RH7_ORYSJ1.308e-4242.48DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sat... [more]
RH7_ARATH2.468e-4142.73DEAD-box ATP-dependent RNA helicase 7 OS=Arabidops... [more]
RH14_ORYSJ9.377e-4139.46DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sa... [more]
RH40_ORYSJ8.777e-3938.57DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sa... [more]
RH46_ARATH3.687e-3737.22DEAD-box ATP-dependent RNA helicase 46 OS=Arabidop... [more]
RH14_ARATH6.290e-3736.32DEAD-box ATP-dependent RNA helicase 14 OS=Arabidop... [more]
EXP9_STRR66.290e-3739.64Probable ATP-dependent RNA helicase exp9 OS=Strept... [more]
EXP9_STRPN6.290e-3739.64Probable ATP-dependent RNA helicase exp9 OS=Strept... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DE05FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258881 ID=DY258881; Name=DY258881; organism=Citrus clementina; type=EST; length=671bp
GGAATCCTCTGTGCTTGGTGTTGGCTCCGACAAGAGAACTTGCGAAGCAA
GTTGAGAAGGAATTCCATGAATCTGCACCCAGCTTGGATACCATTTGTGT
TTACGGGGGCACTCCAATTTCTCATCAAATGAGGGCTCTTGACTATGGTG
TTGATGCGGTTGTTGGGACACCCGGTCGTGTTATTGATTTGATTAAGCGC
AATGCTCTCAACTTATCGGAGGTTCAGTTTGTTGTTCTTGATGAAGCTGA
TCAGATGCTTAGTGTTGGCTTTGCTGAAGATGTTGAAGTCATCTTGGAAA
GGTTGCCACAAAATCGACAGGGTATGATGTTTTCTGCGACGATGCCTCCA
TGGATTAGGAGCCTCACAAATAAGTACCTCAAGAATCCATTAACGGTTGA
CCTTGTTGGAGATTCTGATCAAAAGCTAGCTGATGGAATTCCCCTCTATT
CCATTGCAACAAGCATGTATGAAAAACCATCAATTATTGGTCAGCTTATA
ACAGAACATGCAAAAGGTGGAAAATGCATTGTTTTCACTCAAACAAAACG
TGATGCAGACCGCTTGGCTCATGCTATGGCTAAAAGTTATAATTGTGAGC
CTTTGCATGGGGATATCTCACAAAGCCAGAGGGAGAGGACCCTTTCAGCT
TTCCGAGATGGACGTTTCAAT
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