DY258881
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DDX21_HUMAN (Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 PE=1 SV=5) HSP 1 Score: 173.711 bits (439), Expect = 7.671e-43 Identity = 96/228 (42.11%), Postives = 137/228 (60.09%), Query Frame = 3 Query: 6 PLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL-----ERLPQNRQGMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 668 P LVLAPTRELA QV K+F + L C YGGTP Q + G+D +VGTPGR+ D I+ L+L++++ VVLDE DQML +GFA+ VE IL + N Q ++FSAT P W+ ++ KY+K+ VDL+G QK A + +I ++ ++IG +I ++ G+ I+F +TK++A L+ A + + LHGDI Q QRE TL FR+G F Sbjct: 261 PQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGGQFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVAYKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHWTQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITLKGFRNGSF 488
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DDX50_HUMAN (ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 1.002e-42 Identity = 96/229 (41.92%), Postives = 137/229 (59.83%), Query Frame = 3 Query: 3 NPLCLVLAPTRELAKQVEKEFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER-----LPQNRQGMMFSATMPPWIRSLTNKYLKNPL-TVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 668 +P LVLAPTRELA QV K+F + L C YGGT Q+ + G+D +VGTPGR+ D ++ L+LS+++ VVLDE DQML +GFAE VE I+ N Q ++FSAT P W+ + KY+K+ VDLVG QK A + +I ++P++IG ++ ++ G+ I+F +TK++ +A N + LHGDI+QSQRE TL FR+G F Sbjct: 211 SPKVLVLAPTRELANQVAKDFKDITRKLSVACFYGGTSYQSQINHIRNGIDILVGTPGRIKDHLQSGRLDLSKLRHVVLDEVDQMLDLGFAEQVEDIIHESYKTDSEDNPQTLLFSATCPQWVYKVAKKYMKSRYEQVDLVGKMTQKAATTVEHLAIQCHWSQRPAVIGDVLQVYSGSEGRAIIFCETKKNVTEMAMNPHIKQNAQCLHGDIAQSQREITLKGFREGSF 439
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH7_ORYSJ (DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica GN=Os09g0520700 PE=2 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 1.308e-42 Identity = 96/226 (42.48%), Postives = 143/226 (63.27%), Query Frame = 3 Query: 6 PLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ--NRQGMMFSATMPPWIRSLTNKYLKN-PLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 668 P LVL PTRELAKQV +F + + L CVYGG+ Q A+ GVD VVGTPGRV D +++ LN ++F VLDEAD+ML++GF +DVE+IL ++ Q ++FSAT+P W++ L+ ++LK+ TVDLVGD K + + ++ + + +I +I +++GG+ I+FT+TK A L+ +A S LHGD++Q+QRE L+ FR G+F Sbjct: 194 PTVLVLLPTRELAKQVHTDFAFYGATFGLSACCVYGGSDYRSQEMAIRKGVDIVVGTPGRVKDFVEKGTLNFRSLKFRVLDEADEMLNMGFVDDVELILGKVEDVTKVQTLLFSATIPEWVKKLSLRFLKSGKKTVDLVGDEKLKASASVRHLALPCNRAARAQVIPDIIRCYSRGGRTIIFTETKESASDLSGLIAGS---RALHGDVAQAQREVILAGFRSGKF 416
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH7_ARATH (DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis thaliana GN=RH7 PE=1 SV=2) HSP 1 Score: 168.703 bits (426), Expect = 2.468e-41 Identity = 97/227 (42.73%), Postives = 143/227 (63.00%), Query Frame = 3 Query: 3 NPLCLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNR--QGMMFSATMPPWIRSLTNKYLK-NPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGRF 668 +P LVL PTRELAKQV +F SL + C+YGG Q L GVD VVGTPGR+ D I+R L+ S +QF VLDEAD+ML +GF EDVE+IL ++ + Q ++FSAT+P W+++++N++LK + T+DLVG+ K ++ + +I + +I +I+ ++ GG+ I+F +TK L+ + S LHG+I QSQRE TL+ FR+G+F Sbjct: 174 SPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLPSWVKNISNRFLKRDQKTIDLVGNDKMKASNSVRHIAIPCNKAAMARLIPDIISCYSSGGQTIIFAETKVQVSELSGLLDGS---RALHGEIPQSQREVTLAGFRNGKF 397
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH14_ORYSJ (DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica GN=Os01g0172200 PE=2 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 9.377e-41 Identity = 88/223 (39.46%), Postives = 138/223 (61.88%), Query Frame = 3 Query: 6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 665 P LVL+PTRELA Q++ E + S + ++C+YGG P Q+R L+ G D VV TPGR+ D+++ ++L +V ++VLDEAD+ML +GF + I++++ RQ +MF+AT P +R + + L NP+ V+ +G++DQ +A+ I Y + EK + Q++ G K I+F TKR D+LA +A+ Y +HGD SQ++R+ LS FR GR Sbjct: 253 PTVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRVSLHQVSYLVLDEADRMLDMGFEPQIRKIVKQVQPKRQTLMFTATWPKEVRKIASDLLSNPVQVN-IGNTDQLVANKSITQYVDVITPPEKSRRLDQILRSQEPGSKIIIFCSTKRMCDQLARNLARQYGASAIHGDKSQAERDSVLSEFRSGR 474
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH40_ORYSJ (DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2 SV=2) HSP 1 Score: 160.229 bits (404), Expect = 8.777e-39 Identity = 86/223 (38.57%), Postives = 134/223 (60.09%), Query Frame = 3 Query: 6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSI-ATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 665 P LVLAPTRELA Q+ +E + S + + C+YGG P Q+R LD GVD VV TPGR+ D+++ ++L +V ++VLDEAD+ML +GF + I++ +P RQ +M++AT P +R + L +P+ V +G D+ +A+ ++ + EK + Q++ G K ++F TKR D+LA + + + +HGD SQS+RE+ LS FR GR Sbjct: 223 PTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKGPQLRDLDRGVDVVVATPGRLNDILEMRRISLKQVSYLVLDEADRMLDMGFEPQIRKIVKEIPPRRQTLMYTATWPKEVRRIAEDLLVHPVQV-TIGSVDELVANSAITQNVELITPSEKLRRLEQILRSQDSGSKVLIFCTTKRMCDQLARTLTRQFGASAIHGDKSQSEREKVLSHFRSGR 444
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH46_ARATH (DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana GN=RH46 PE=2 SV=2) HSP 1 Score: 154.836 bits (390), Expect = 3.687e-37 Identity = 83/223 (37.22%), Postives = 134/223 (60.09%), Query Frame = 3 Query: 6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSI-ATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 665 P LVL+PTRELA Q++ E + S + C+YGG P Q++ ++ GVD VV TPGR+ D+++ ++L +V ++VLDEAD+ML +GF + I+ +P RQ +M++AT P +R + L NP V+ +G+ D+ +A+ +I + EK S + Q++ G K I+F TKR D+LA + +++ +HGD SQ++R+ L+ FR GR Sbjct: 234 PTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQVN-IGNVDELVANKSITQTIEVLAPMEKHSRLEQILRSQEPGSKIIIFCSTKRMCDQLARNLTRTFGAAAIHGDKSQAERDDVLNQFRSGR 455
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH14_ARATH (DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana GN=RH14 PE=1 SV=2) HSP 1 Score: 154.066 bits (388), Expect = 6.290e-37 Identity = 81/223 (36.32%), Postives = 131/223 (58.74%), Query Frame = 3 Query: 6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLAD-GIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 665 P LVL+PTRELA Q+++E + S + C+YGG P Q+R L+ G D VV TPGR+ D+++ ++L ++ ++VLDEAD+ML +GF + I++ +P RQ +M++AT P +R + L NP V+ +G+ D+ +A+ I + + EK + Q++ G K I+F TKR D+L + + + +HGD SQ +R+ L+ FR GR Sbjct: 231 PTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQVN-IGNVDELVANKSITQHIEVVAPMEKQRRLEQILRSQEPGSKVIIFCSTKRMCDQLTRNLTRQFGAAAIHGDKSQPERDNVLNQFRSGR 452
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: EXP9_STRR6 (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=exp9 PE=3 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 6.290e-37 Identity = 88/222 (39.64%), Postives = 137/222 (61.71%), Query Frame = 3 Query: 15 LVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671 LV+APTRELA Q ++E S + VYGG+ I Q++AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+NRQ ++FSATMP I+ + +++K P V + + + + + Y I EK + +L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G + Sbjct: 73 LVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTRLM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: EXP9_STRPN (Probable ATP-dependent RNA helicase exp9 OS=Streptococcus pneumoniae GN=exp9 PE=3 SV=1) HSP 1 Score: 154.066 bits (388), Expect = 6.290e-37 Identity = 88/222 (39.64%), Postives = 137/222 (61.71%), Query Frame = 3 Query: 15 LVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671 LV+APTRELA Q ++E S + VYGG+ I Q++AL G VVGTPGR++DLIKR AL L +++ ++LDEAD+ML++GF ED+E I+ R+P+NRQ ++FSATMP I+ + +++K P V + + + + + Y I EK + +L+ + A+ IVF +TKR D L + + + E +HGD+ Q++R R L F++G + Sbjct: 73 LVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIA--AKELTTELVDQYYIRVKEQEKFDTMTRLM-DVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLD 291 The following BLAST results are available for this feature:
BLAST of DY258881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY258881 ID=DY258881; Name=DY258881; organism=Citrus clementina; type=EST; length=671bpback to top |