DY258881

Overview
NameDY258881
Unique NameDY258881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: Y1965_STAAB (Probable DEAD-box ATP-dependent RNA helicase SAB1965c OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB1965c PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.713e-34
Identity = 86/225 (38.22%), Postives = 135/225 (60.00%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-NRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671
            L+LAPTRELA QV ++  E +    +  + V+GG PI  Q++AL  G   VVGTPGRVID + R  L    +  ++LDEAD+M+++GF +D+  I++++P   RQ M+FSATMP  I++L  +++K+P  +  + +  SD ++ +    Y+I   + EK       +  H +    IVF +TKR  D L  A+ +K Y  E LHGDI+Q++R   L  F++ + N
Sbjct:   73 LILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIN 292          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: Y1885_STAAN (Probable DEAD-box ATP-dependent RNA helicase SA1885 OS=Staphylococcus aureus (strain N315) GN=SA1885 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.713e-34
Identity = 86/225 (38.22%), Postives = 135/225 (60.00%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-NRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671
            L+LAPTRELA QV ++  E +    +  + V+GG PI  Q++AL  G   VVGTPGRVID + R  L    +  ++LDEAD+M+++GF +D+  I++++P   RQ M+FSATMP  I++L  +++K+P  +  + +  SD ++ +    Y+I   + EK       +  H +    IVF +TKR  D L  A+ +K Y  E LHGDI+Q++R   L  F++ + N
Sbjct:   73 LILAPTRELAMQVAEQLREFSRGQGVQVVTVFGGMPIERQIKALKKGPQIVVGTPGRVIDHLNRRTLKTDGIHTLILDEADEMMNMGFIDDMRFIMDKIPAVQRQTMLFSATMPKAIQALVQQFMKSPKIIKTMNNEMSDPQIEE---FYTIVKEL-EKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALISKGYKAEGLHGDITQAKRLEVLKKFKNDQIN 292          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DED1_CRYNE (ATP-dependent RNA helicase ded1 OS=Cryptococcus neoformans GN=DED1 PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.713e-34
Identity = 91/229 (39.74%), Postives = 132/229 (57.64%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL--ERLP--QNRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 665
            P  LVLAPTREL  Q+ +E  + A    +    VYGG  I  QMRALD G D +  TPGR++DLI+R  ++L+ V+++VLDEAD+ML +GF   +  I+  E +P    RQ +MFSAT P  I++L   +LK    LTV  VG + + +   +          +K S++  L+     GG  +VF +TKR AD L   + ++ +N   +HGD +Q +RE  L AF+ GR
Sbjct:  248 PTALVLAPTRELVSQIHEEARKFAYRSWVRPAVVYGGADIGSQMRALDRGCDLLSATPGRLVDLIERGKISLANVKYLVLDEADRMLDMGFEPQIRRIVDEEDMPGVLERQTLMFSATFPREIQNLARSFLKEYIFLTVGRVGSTSENITQRVEY----VDDQDKRSLLLDLLLAEQSGGLILVFVETKRMADTLCDFLCSRRHNATSIHGDRTQREREAALYAFKSGR 472          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: Y956_STAHJ (Probable DEAD-box ATP-dependent RNA helicase SH0956 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH0956 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.237e-34
Identity = 86/225 (38.22%), Postives = 138/225 (61.33%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHA-MAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671
            L+LAPTRELA QV ++  E +   ++  + V+GG PI  Q++AL  G   VVGTPGRVID + R  L  + +  ++LDEAD+M+++GF +D+  I++++P + RQ M+FSATMP  I++L  +++K+P  V  + +  SD ++ +    Y+I   + EK       +  H +    IVF +TKR  D L  A ++K Y  E LHGDI+Q++R   L  F++ + +
Sbjct:   73 LILAPTRELAMQVAEQLREFSRGQNVQVVTVFGGMPIDRQIKALKRGPQIVVGTPGRVIDHLNRRTLKTNGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPKAIQTLVQQFMKSPQIVKTMNNEMSDPQIDE---YYTIVKEL-EKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQID 292          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH5_ARATH (DEAD-box ATP-dependent RNA helicase 5 OS=Arabidopsis thaliana GN=RH5 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.816e-34
Identity = 90/226 (39.82%), Postives = 132/226 (58.41%), Query Frame = 3
Query:    3 NPLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYL-KNPLTVDLVGDSDQKL-ADGIPLYSIATSMYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 662
            NP CLVL+PTRELA Q+     E+     L +ICVYGG+    Q+ A+  GVD V+GTPGR+ DLI+ N L LS+V FVVLDEAD+ML +GF E V  IL    + RQ +MFSAT P  +  L  +++  NP+ V ++G  D     D + +  +         +I  L   H ++  + +VF   K +A+RL   +  + +    +HG+ +QS+R R+LS F++G
Sbjct:  191 NPTCLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFMDPNPIKV-IIGSVDLAANHDVMQIIEVLDERARDQRLIALLEKYHKSQKNRVLVFALYKVEAERLERFLQQRGWKAVSIHGNKAQSERTRSLSLFKEG 415          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DBP2_DEBHA (ATP-dependent RNA helicase DBP2 OS=Debaryomyces hansenii GN=DBP2 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.984e-34
Identity = 83/225 (36.89%), Postives = 131/225 (58.22%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-PLYSIATSMYEKPSIIGQLITEHA-KGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 665
            P+ LVLAPTRELA Q+++E  +  S+  +   CVYGG P   Q+R L  GV+  + TPGR+ID+++    NL  V ++VLDEAD+ML +GF   +  I++++  +RQ +M+SAT P  +++LT  YL +P+ V  VG  +   +  I  L  + T   ++  +I  L T  A    KC++F  TKR  D + + + A  +    +HGD  Q +R+  L  F+ G+
Sbjct:  179 PIVLVLAPTRELAVQIQQECSKFGSSSRIRNTCVYGGAPKGQQIRDLARGVEICIATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQALTRDYLNDPIQV-TVGSLELAASHTITQLVEVVTEFEKRDRLIKHLETATADPEAKCLIFASTKRTCDEITNYLRADGWPALAIHGDKQQGERDWVLKEFKTGK 402          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DBP1_YEAST (ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae GN=DBP1 PE=1 SV=2)

HSP 1 Score: 143.665 bits (361), Expect = 8.501e-34
Identity = 90/226 (39.82%), Postives = 136/226 (60.18%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP----QNRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFR 656
            P  LVLAPTRELA Q+ +E  +      +    VYGG PI +QMR +D G D +V TPGR+ DL++R  ++L+ ++++VLDEAD+ML +GF   +  I+E       +NRQ +MFSAT P  I+ L   +L N   L+V  VG + + +   I LY     M +K +++  L  EH   G  ++F +TKR AD+L    + +++    +HGD +Q++RER LSAF+
Sbjct:  238 PSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRI-LY--VDDMDKKSALLDLLSAEHK--GLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFK 458          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DBP1_YEAS7 (ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae (strain YJM789) GN=DBP1 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.501e-34
Identity = 90/226 (39.82%), Postives = 136/226 (60.18%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP----QNRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFR 656
            P  LVLAPTRELA Q+ +E  +      +    VYGG PI +QMR +D G D +V TPGR+ DL++R  ++L+ ++++VLDEAD+ML +GF   +  I+E       +NRQ +MFSAT P  I+ L   +L N   L+V  VG + + +   I LY     M +K +++  L  EH   G  ++F +TKR AD+L    + +++    +HGD +Q++RER LSAF+
Sbjct:  238 PSALVLAPTRELATQIFEEARKFTYRSWVRPCVVYGGAPIGNQMREVDRGCDLLVATPGRLNDLLERGKVSLANIKYLVLDEADRMLDMGFEPQIRHIVEECDMPSVENRQTLMFSATFPVDIQHLARDFLDNYIFLSVGRVGSTSENITQRI-LY--VDDMDKKSALLDLLSAEHK--GLTLIFVETKRMADQLTDFLIMQNFKATAIHGDRTQAERERALSAFK 458          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: Y1688_STAEQ (Probable DEAD-box ATP-dependent RNA helicase SERP1688 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=SERP1688 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.110e-33
Identity = 85/225 (37.78%), Postives = 133/225 (59.11%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHA-MAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671
            L+LAPTRELA QV ++  E      +  + V+GG PI  Q++AL  G   VVGTPGRVID + R  L    +  ++LDEAD+M+++GF +D+  I++++P + RQ M+FSATMP  I+ L  +++K P  +  + +  SD ++ +    Y+I   + EK       +  H +    IVF +TKR  D L  A ++K Y  E LHGDI+Q++R   L  F++ + +
Sbjct:   73 LILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKALKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDE---YYTIVKEL-EKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQID 292          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DBP3_COCIM (ATP-dependent RNA helicase DBP3 OS=Coccidioides immitis GN=DBP3 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.110e-33
Identity = 85/228 (37.28%), Postives = 131/228 (57.46%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEF--HESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP--QNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGK----CIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 662
            P  L++ PTRELA Q+  +     SA  +   C+YGG+P  HQ R +      V+ TPGR+ D      +NLS V+++VLDEAD+ML  GF +D++ I++ +P  Q RQ +MF+AT P  +R+L   + KNP+TV +   SD +    I         YEK S + +L+  +  GGK     +VF   K++A R+   + +K +    +HGD+SQ++R R+L AF+ G
Sbjct:  173 PCALIITPTRELAVQIYDQLLRFSSAVDVGIACIYGGSPKDHQRREIR-NASVVIATPGRLKDFQADQTINLSGVKYLVLDEADRMLDKGFEQDIQDIVKGIPSTQKRQTIMFTATWPIGVRNLAASFTKNPVTVTIGDSSDIRANKRIKQMVEVLQPYEKDSRLLELLRRYQDGGKNNHRILVFCLYKKEAMRVERFIGSKGFKVAGIHGDMSQTERFRSLEAFKSG 399          
The following BLAST results are available for this feature:
BLAST of DY258881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
Y1965_STAAB1.713e-3438.22Probable DEAD-box ATP-dependent RNA helicase SAB19... [more]
Y1885_STAAN1.713e-3438.22Probable DEAD-box ATP-dependent RNA helicase SA188... [more]
DED1_CRYNE1.713e-3439.74ATP-dependent RNA helicase ded1 OS=Cryptococcus ne... [more]
Y956_STAHJ2.237e-3438.22Probable DEAD-box ATP-dependent RNA helicase SH095... [more]
RH5_ARATH3.816e-3439.82DEAD-box ATP-dependent RNA helicase 5 OS=Arabidops... [more]
DBP2_DEBHA4.984e-3436.89ATP-dependent RNA helicase DBP2 OS=Debaryomyces ha... [more]
DBP1_YEAST8.501e-3439.82ATP-dependent RNA helicase DBP1 OS=Saccharomyces c... [more]
DBP1_YEAS78.501e-3439.82ATP-dependent RNA helicase DBP1 OS=Saccharomyces c... [more]
Y1688_STAEQ1.110e-3337.78Probable DEAD-box ATP-dependent RNA helicase SERP1... [more]
DBP3_COCIM1.110e-3337.28ATP-dependent RNA helicase DBP3 OS=Coccidioides im... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DE05FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258881 ID=DY258881; Name=DY258881; organism=Citrus clementina; type=EST; length=671bp
GGAATCCTCTGTGCTTGGTGTTGGCTCCGACAAGAGAACTTGCGAAGCAA
GTTGAGAAGGAATTCCATGAATCTGCACCCAGCTTGGATACCATTTGTGT
TTACGGGGGCACTCCAATTTCTCATCAAATGAGGGCTCTTGACTATGGTG
TTGATGCGGTTGTTGGGACACCCGGTCGTGTTATTGATTTGATTAAGCGC
AATGCTCTCAACTTATCGGAGGTTCAGTTTGTTGTTCTTGATGAAGCTGA
TCAGATGCTTAGTGTTGGCTTTGCTGAAGATGTTGAAGTCATCTTGGAAA
GGTTGCCACAAAATCGACAGGGTATGATGTTTTCTGCGACGATGCCTCCA
TGGATTAGGAGCCTCACAAATAAGTACCTCAAGAATCCATTAACGGTTGA
CCTTGTTGGAGATTCTGATCAAAAGCTAGCTGATGGAATTCCCCTCTATT
CCATTGCAACAAGCATGTATGAAAAACCATCAATTATTGGTCAGCTTATA
ACAGAACATGCAAAAGGTGGAAAATGCATTGTTTTCACTCAAACAAAACG
TGATGCAGACCGCTTGGCTCATGCTATGGCTAAAAGTTATAATTGTGAGC
CTTTGCATGGGGATATCTCACAAAGCCAGAGGGAGAGGACCCTTTCAGCT
TTCCGAGATGGACGTTTCAAT
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