DY258881

Overview
NameDY258881
Unique NameDY258881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DBP2_KLULA (ATP-dependent RNA helicase DBP2 OS=Kluyveromyces lactis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.110e-33
Identity = 81/225 (36.00%), Postives = 132/225 (58.67%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-PLYSIATSMYEKPSIIGQLIT-EHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 665
            P+ LVLAPTRELA Q++KE  +   S  +   CVYGG P S Q+R L  GV+ ++ TPGR+ID+++    NL  V ++VLDEAD+ML +GF   +  I++++  +RQ +M+SAT P  ++ L + YL +P+ V  +G  +   +  I  +  + T   ++  +   L T    +  K I+F  TKR  D + ++   + +    +HGD +Q++R+  L+ FR GR
Sbjct:  187 PIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLASDYLHDPIQVQ-IGSLELSASHTITQIVEVLTDFEKRDRLAKHLETASQDQDSKIIIFASTKRTCDEITSYLRTEGWPALAIHGDKAQNERDWVLAEFRSGR 410          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH30_ARATH (DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana GN=RH30 PE=2 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.450e-33
Identity = 77/223 (34.53%), Postives = 131/223 (58.74%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 665
            P+ L+LAPTRELA Q+++E  +      + + C+YGG P   Q+R L  GV+ V+ TPGR+ID+++    NL  V ++VLDEAD+ML +GF   +  I+ ++  +RQ +++SAT P  + +L  ++L++P    ++G +D K    I          EK + +  L+ +   G K ++F +TKR  D++   +    +    +HGD +QS+R+R L+ F+ GR
Sbjct:  239 PIVLILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLARQFLRDPYKA-IIGSTDLKANQSINQVIEIVPTPEKYNRLLTLLKQLMDGSKILIFVETKRGCDQVTRQLRMDGWPALAIHGDKTQSERDRVLAEFKSGR 460          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DBP2_VANPO (ATP-dependent RNA helicase DBP2 OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM 70294) GN=DBP2 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.450e-33
Identity = 81/225 (36.00%), Postives = 129/225 (57.33%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-PLYSIATSMYEKPSIIGQLIT-EHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 665
            P+ LVLAPTRELA Q++KE  +  S+  +   CVYGG P   Q+R L  G + V+ TPGR+ID+++    NL  V ++VLDEAD+ML +GF   +  I++++  +RQ +M+SAT P  ++ L + YL +P+ V  +G  +   +  I  L  + +   ++  ++  L T    K  K +VF  TKR  D +   + +  +    +HGD  Q +R+  L  FR+GR
Sbjct:  187 PIVLVLAPTRELAVQIQKECSKFGSSSRIRNSCVYGGVPRGQQIRELSRGAEIVIATPGRLIDMLEIGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVKQLAHDYLNDPIQVQ-IGSLELSASHNITQLVEVVSDFEKRDRLLKHLETASEDKDSKILVFASTKRTCDEVTKYLREDGWPALAIHGDKDQRERDWVLQEFREGR 410          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DBP2_YARLI (ATP-dependent RNA helicase DBP2 OS=Yarrowia lipolytica GN=DBP2 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.894e-33
Identity = 81/225 (36.00%), Postives = 133/225 (59.11%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-PLYSIATSMYEKPSIIGQLIT-EHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 665
            P+ LVLAPTRELA Q+++E  +   S  +   CVYGG P   Q+R L  GV+ V+ TPGR++D+++    NL  V ++VLDEAD+ML +GF   +  I++++  +RQ +M+SAT P  ++ L + YLK+ + V+ +G  +   +  I  +  + T   ++  ++  L T    K  KC++FT TKR AD +   + +  +    +HGD  Q +R+  L+ FR G+
Sbjct:  190 PIVLVLAPTRELAVQIQQECSKFGKSSKIRNTCVYGGVPRGQQIRDLARGVEIVIATPGRLLDMLESGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQRLAHDYLKDQIQVN-IGSLELSASHNITQVVEVCTEYEKRDRLVKHLETVMENKESKCLIFTGTKRVADDITKFLRQDGWPALAIHGDKQQQERDWVLNEFRQGK 413          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DBP2_ENCCU (ATP-dependent RNA helicase DBP2 OS=Encephalitozoon cuniculi GN=DBP2 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.894e-33
Identity = 88/224 (39.29%), Postives = 127/224 (56.70%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAP--SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-PLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGR 665
            P+ LVLAPTREL  Q++K   E     +L +  VYGG     Q+RAL  G + V+ TPGR+IDL  +    LS V F+VLDEAD+ML +GF   +  I+ +   NRQ +M+SAT P  +R L   Y+   + V +VG+ + K    I  +  + +   ++  +IG  + ++ KG K IVF   KR  D L + + +S Y    LHGD SQ+ R++ L  FR GR
Sbjct:  161 PIVLVLAPTRELVMQIKKVVDEFCGMFNLRSTAVYGGASSQPQIRALHEGAEVVIATPGRLIDLHDQGHAPLSRVTFLVLDEADRMLDMGFEPQLRKIIPKTNANRQTLMWSATWPREVRGLAESYMNEYIQV-VVGNEELKTNSKIKQIVEVCSGREKEDKLIG--VLDNFKGDKVIVFCNMKRTCDDLEYVLNRSGYGAAALHGDKSQNIRDKVLDDFRSGR 381          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH52A_ORYSJ (DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica GN=Os06g0602400 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.473e-33
Identity = 87/236 (36.86%), Postives = 138/236 (58.47%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILER--LPQN--RQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKG--------GKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 662
            P  LVLAPTRELA Q+ +E  + +    L  +  YGGTP+ +Q+R L+ G D +V TPGR++D+++R+ ++L  ++++V+DEAD+ML +GF   +  I+ER  +P+   RQ M+FSAT PP I+ L + +L N   +TV  VG S   +   + L S      EK   +  L+   + G           +VF +TKR+AD L + + +K +    +HGD +Q +RE  L +F+ G
Sbjct:  169 PRALVLAPTRELAAQINEEAKKFSFQTGLRVVVAYGGTPMYNQLRDLERGADILVATPGRLVDMVERSKVSLEAIKYLVMDEADRMLDMGFEPQIRKIVERMNMPRKSVRQTMLFSATFPPEIQRLASDFLSNYIFITVGRVGSSTDLIMQKVELLSDG----EKRGYLLDLLQRQSVGVANSKLQQPLTLVFVETKREADSLRYWLYSKGFPATAIHGDRTQQERESALRSFKTG 400          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: Y1679_STAES (Probable DEAD-box ATP-dependent RNA helicase SE_1679 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_1679 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.230e-33
Identity = 84/225 (37.33%), Postives = 132/225 (58.67%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHA-MAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671
            L+LAPTRELA QV ++  E      +  + V+GG PI  Q++ L  G   VVGTPGRVID + R  L    +  ++LDEAD+M+++GF +D+  I++++P + RQ M+FSATMP  I+ L  +++K P  +  + +  SD ++ +    Y+I   + EK       +  H +    IVF +TKR  D L  A ++K Y  E LHGDI+Q++R   L  F++ + +
Sbjct:   73 LILAPTRELAMQVAEQLREFSKGQKVQVVTVFGGMPIERQIKVLKRGPQIVVGTPGRVIDHLNRRTLKTQGIHTLILDEADEMMNMGFIDDMRFIMDKIPAEQRQTMLFSATMPKAIQELVQQFMKAPKIIKTMNNEMSDPQIDE---YYTIVKEL-EKFDTFTNFLDVH-QPELAIVFGRTKRRVDELTSALLSKGYKAEGLHGDITQAKRLEVLKKFKNDQID 292          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DED1_CANAL (ATP-dependent RNA helicase DED1 OS=Candida albicans GN=DED1 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.399e-33
Identity = 91/228 (39.91%), Postives = 136/228 (59.65%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHE-SAPSLDTICV-YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP----QNRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDG 662
            P  LV+APTREL  Q+ +E  + S  S    CV YGG  I  QMR +D G D +V TPGR+ DL+ R  ++L+ ++++VLDEAD+ML +GF   +  I+E       ++RQ +MFSAT P  I+ L   +LK+   L+V  VG + + +   I    +     EK S+I  L++ + + G  IVFT+TKR AD LA +   + +    +HGD SQ +RE+ L+AF++G
Sbjct:  270 PTILVMAPTRELVSQIYEESKKFSYRSWVRACVVYGGADIGQQMRNMDRGCDLLVATPGRLKDLLDRGKVSLANIRYLVLDEADRMLDMGFEPQIRYIVEECDMPAVKDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKI----LYVEDDEKKSVILDLLSAN-ENGLTIVFTETKRMADNLADYLYDQGFPATAIHGDRSQYEREKALAAFKNG 492          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Schizaphis graminum GN=deaD PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 9.399e-33
Identity = 83/226 (36.73%), Postives = 128/226 (56.64%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFN 671
            P  LVLAPTRELA QV + F + +     +  + +YGG     Q+RAL  G   VVGTPGR++D +KR  LNLS +  +VLDEAD+ML +GF EDVE I+ ++P+  Q  +FSATMP  IR ++ +++KNP  + +       +     +      +Y + +       E       I+F +TK     ++ A+ ++ YN   L+GD++Q+ RE+TL   + GR +
Sbjct:   75 PQILVLAPTRELAVQVAEAFSDFSKYIMGIHVLPLYGGQRYEVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLYALVLDEADEMLRMGFIEDVETIMSQIPKEHQTALFSATMPEAIRRISKRFMKNPQEIKI----QSNITTRPDIKQSYWMVYGRKTDALIRFLEVEDFSATIIFVKTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKSGRLD 296          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH20_ORYSJ (DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica GN=Os01g0197200 PE=3 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.228e-32
Identity = 77/223 (34.53%), Postives = 130/223 (58.30%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 665
            P+ LVLAPTRELA Q+++E  +   S  + + C+YGG P   Q+R L  GV+ V+ TPGR+ID+I+ +  NL  V ++VLDEAD+ML +GF   ++ I+ ++  +RQ + +SAT P  +  L   +L +P  V ++G  + K    I  +    S  +K + +  L+ +   G + ++F  TK+  D++   +    +    +HGD SQ++R+  LS F+ G+
Sbjct:  165 PIVLVLAPTRELAVQIQQEATKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESHHTNLRRVTYLVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYWSATWPKEVEQLARNFLFDPYKV-IIGSEELKANHAISQHVEILSESQKYNKLVNLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGWPALSIHGDKSQAERDWVLSEFKSGK 386          
The following BLAST results are available for this feature:
BLAST of DY258881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP2_KLULA1.110e-3336.00ATP-dependent RNA helicase DBP2 OS=Kluyveromyces l... [more]
RH30_ARATH1.450e-3334.53DEAD-box ATP-dependent RNA helicase 30 OS=Arabidop... [more]
DBP2_VANPO1.450e-3336.00ATP-dependent RNA helicase DBP2 OS=Vanderwaltozyma... [more]
DBP2_YARLI1.894e-3336.00ATP-dependent RNA helicase DBP2 OS=Yarrowia lipoly... [more]
DBP2_ENCCU1.894e-3339.29ATP-dependent RNA helicase DBP2 OS=Encephalitozoon... [more]
RH52A_ORYSJ2.473e-3336.86DEAD-box ATP-dependent RNA helicase 52A OS=Oryza s... [more]
Y1679_STAES3.230e-3337.33Probable DEAD-box ATP-dependent RNA helicase SE_16... [more]
DED1_CANAL9.399e-3339.91ATP-dependent RNA helicase DED1 OS=Candida albican... [more]
DEAD_BUCAP9.399e-3336.73Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
RH20_ORYSJ1.228e-3234.53DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DE05FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258881 ID=DY258881; Name=DY258881; organism=Citrus clementina; type=EST; length=671bp
GGAATCCTCTGTGCTTGGTGTTGGCTCCGACAAGAGAACTTGCGAAGCAA
GTTGAGAAGGAATTCCATGAATCTGCACCCAGCTTGGATACCATTTGTGT
TTACGGGGGCACTCCAATTTCTCATCAAATGAGGGCTCTTGACTATGGTG
TTGATGCGGTTGTTGGGACACCCGGTCGTGTTATTGATTTGATTAAGCGC
AATGCTCTCAACTTATCGGAGGTTCAGTTTGTTGTTCTTGATGAAGCTGA
TCAGATGCTTAGTGTTGGCTTTGCTGAAGATGTTGAAGTCATCTTGGAAA
GGTTGCCACAAAATCGACAGGGTATGATGTTTTCTGCGACGATGCCTCCA
TGGATTAGGAGCCTCACAAATAAGTACCTCAAGAATCCATTAACGGTTGA
CCTTGTTGGAGATTCTGATCAAAAGCTAGCTGATGGAATTCCCCTCTATT
CCATTGCAACAAGCATGTATGAAAAACCATCAATTATTGGTCAGCTTATA
ACAGAACATGCAAAAGGTGGAAAATGCATTGTTTTCACTCAAACAAAACG
TGATGCAGACCGCTTGGCTCATGCTATGGCTAAAAGTTATAATTGTGAGC
CTTTGCATGGGGATATCTCACAAAGCCAGAGGGAGAGGACCCTTTCAGCT
TTCCGAGATGGACGTTTCAAT
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