DY258881

Overview
NameDY258881
Unique NameDY258881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DBP2_EMENI (ATP-dependent RNA helicase dbp2 OS=Emericella nidulans GN=dbp2 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.228e-32
Identity = 81/225 (36.00%), Postives = 127/225 (56.44%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITE--HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 665
            P+ L+LAPTRELA Q++ E  +   S  +   CVYGG P   Q+R L  GV+  + TPGR+ID+++    NL  V ++VLDEAD+ML +GF   +  I+ ++  +RQ  M+SAT P  +R L + +L N + V+ +G  D      I       S +EK   + + + +    +G KC+VFT TKR AD +   + +  +    +HGD  Q +R+  L+ F+ G+
Sbjct:  214 PIVLILAPTRELAVQIQAEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKEVRQLASDFLNNYIQVN-IGSMDLSANHRITQIVEVISEFEKRDRMIKHLEKIMENRGNKCLVFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGK 437          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DEAD_HAEIN (Cold-shock DEAD box protein A homolog OS=Haemophilus influenzae GN=deaD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.603e-32
Identity = 86/225 (38.22%), Postives = 129/225 (57.33%), Query Frame = 3
Query:    3 NPLCLVLAPTRELAKQVEKE---FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDL-VGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDG 662
            +P  LV+APTRELA QV      F + A     + +YGG     Q+RAL  G   VVGTPGR++D I+R  LNLSE++F+VLDEAD+ML +GF +DVE ++  LP+N Q  +FSATMP  IR +T +++ +P  V + V + +    D    Y     + +  +++  L  E       I+F +TK     +   + K+ +    L+GD++Q  RE+TL   R+G
Sbjct:   73 HPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALKQGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLRMGFIDDVETVMAELPENHQTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDIDQSCWY--VHGVRKNEALLRFLEVEDFDA--AIIFARTKTGTLDITELLEKNGFRSAALNGDMTQQLREQTLDRLRNG 293          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DEAD_BUCAI (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=deaD PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.603e-32
Identity = 82/226 (36.28%), Postives = 129/226 (57.08%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAP---SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFN 671
            P  LVLAPTRELA QV + F + +     +  + +YGG     Q+RAL  G   VVGTPGR++D +KR  LNLS +  +VLDEAD+ML +GF EDVE I+ ++P+  Q  +FSATMP  IR ++ ++++NP  + +       +     +      +Y + +       E       I+F +TK     ++ A+ ++ YN   L+GD++Q+ RE+TL   ++GR +
Sbjct:   75 PQILVLAPTRELAVQVAEAFSDFSKYMIGIHVLPLYGGQRYELQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLHGLVLDEADEMLRMGFIEDVETIMAQIPKEHQTALFSATMPEAIRRISKRFMRNPKEIKI----QSNITTRPDIKQSYWMVYGRKTDALIRFLEAEDFSATIIFVRTKNATLEVSEALERNGYNSAALNGDMNQALREQTLERLKNGRLD 296          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DBP2_PICST (ATP-dependent RNA helicase DBP2 OS=Pichia stipitis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.603e-32
Identity = 82/225 (36.44%), Postives = 131/225 (58.22%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEK-PSIIGQLITEHA-KGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 665
            P+ LVLAPTRELA Q+++E  +  S+  +   CVYGG P   Q+R L  GV+ V+ TPGR+ID+++    NL  V ++VLDEAD+ML +GF   +  I++++  +RQ +M+SAT P  +++L   YL++P+ V  +G  +   +  I       S YEK   ++  L T    K  K ++F  TK+  D + ++  A  +    +HGD  QS+R+  L  F+ G+
Sbjct:  171 PVVLVLAPTRELAVQIQQECSKFGSSSRIRNTCVYGGAPKGQQIRDLARGVEIVIATPGRLIDMLEMGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQNLARDYLQDPIQV-RIGSLELAASHTITQVVEVISEYEKRDRLVKHLETATTEKESKVLIFASTKKTCDEVTSYLRADGWPALAIHGDKQQSERDWVLREFKTGK 394          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DED1_LODEL (ATP-dependent RNA helicase DED1 OS=Lodderomyces elongisporus GN=DED1 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.094e-32
Identity = 88/229 (38.43%), Postives = 136/229 (59.39%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP----QNRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDGR 665
            P  LV+APTREL  Q+  E  + A    +    VYGG  I +Q+R LD G D +V TPGR+ DL++R  ++L+ ++++VLDEAD+ML +GF   +  I++       Q+RQ +MFSAT P  I+ L   +LK+   L+V  VG + + +   +    +     EK S+I  L+  +++ G  IVFT+TKR AD LA  +  + +    +HGD SQ +RE+ L+AF+ G+
Sbjct:  259 PTILVMAPTRELVSQIYDESKKFAYRSWVRPCVVYGGADIGNQIRQLDRGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRHIVQECDMPDVQDRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKV----LYVEDEEKKSVILDLLNANSE-GLTIVFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSGQ 482          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DBP2_PICGU (ATP-dependent RNA helicase DBP2 OS=Pichia guilliermondii GN=DBP2 PE=3 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 2.735e-32
Identity = 81/225 (36.00%), Postives = 131/225 (58.22%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEK-PSIIGQLITEHA-KGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 665
            P+ LVLAPTRELA Q+++E  +   S  +   C+YGG P   Q+R L  GV+  + TPGR+ID+++    NL  V ++VLDEAD+ML +GF   +  I++++  +RQ +M+SAT P  +++LT  YL +P+ V  +G  +   +  I       S +EK   ++  L T  A K  K ++F+ TKR  D + ++  A  +    +HGD  Q++R+  L  F+ G+
Sbjct:  199 PIVLVLAPTRELAVQIQQECSKFGASSRIRNTCIYGGAPKGQQIRDLARGVEICIATPGRLIDMLETGKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQTLTRDYLNDPIQV-TIGSLELAASHTITQIVEVLSEFEKRDRLVKHLETATADKEAKVLIFSSTKRACDEITSYLRADGWPALAIHGDKQQNERDWVLREFKTGK 422          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DED1_CANGA (ATP-dependent RNA helicase DED1 OS=Candida glabrata GN=DED1 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.572e-32
Identity = 87/231 (37.66%), Postives = 134/231 (58.01%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ----NRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGRFN 671
            P  +V+APTRELA Q+  E  +      +    VYGG PI +QMR +D+G D +V TPGR+ DL++R  ++LS V+++VLDEAD+ML +GF   +  I+E         RQ +MFSAT P  I+ L   +L +   L+V  VG + + +   I    +     +K S +  L+   +     ++F +TKR AD+L    + ++++   +HGD SQ++RER L+AFR GR N
Sbjct:  229 PTAVVMAPTRELATQIFDEAKKFCYRSWVKPCVVYGGAPIGNQMREMDHGCDLLVATPGRLNDLLERGKVSLSNVKYLVLDEADRMLDMGFEPQIRHIVEDCDMPPTGERQTLMFSATFPHDIQHLARDFLHDYIFLSVGRVGSTSENITQRI----LYVENRDKNSALLDLLAA-SNDNLTLIFVETKRMADQLTDFLIMQNFSATAIHGDRSQAERERALAAFRSGRAN 454          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DBP3_LODEL (ATP-dependent RNA helicase DBP3 OS=Lodderomyces elongisporus GN=DBP3 PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.572e-32
Identity = 79/229 (34.50%), Postives = 129/229 (56.33%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESAPSLDTICV--YGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADG--IPLYSIATSMYEKPSIIGQLITEHAKGG----KCIVFTQTKRDADRLAHAMAKS-YNCEPLHGDISQSQRERTLSAFRDGRFN 671
            L ++PTRELA Q+     +     D  CV  YGG     Q++ +  G + VV TPGR++DLI   A++LS + ++VLDEAD+ML  GF ED+++I+   P Q RQ +MF+AT P  +R L N ++  P+ V  +GD D+  A+     +  +    ++K   +  L+ ++   G    K +VF   K++A R+   + ++ +    +HGD+SQ QR + L +F+ G  N
Sbjct:  199 LCISPTRELALQIYDNLEDLTRGTDVSCVAIYGGVSKDDQIKKIRNGANVVVATPGRLVDLINDGAVDLSSINYLVLDEADRMLEKGFEEDIKLIIGSTPAQGRQTLMFTATWPKEVRELANNFMNQPVKV-TIGDRDELSANKRITQIVEVLDDKFQKEKKLINLLQKYQNTGNGDNKILVFALYKKEASRIESLLHRNKFKVAAIHGDLSQQQRTQALQSFKSGECN 426          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DBP2_CANGA (ATP-dependent RNA helicase DBP2 OS=Candida glabrata GN=DBP2 PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.572e-32
Identity = 79/224 (35.27%), Postives = 126/224 (56.25%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-PLYSIATSMYEKPSIIGQLIT-EHAKGGKCIVFTQTKRDADRL-AHAMAKSYNCEPLHGDISQSQRERTLSAFRDG 662
            P+ LVLAPTRELA Q++KE  +   S  +   CVYGG P   Q+R L  G + V+ TPGR+ID+++    NL  V ++VLDEAD+ML +GF   +  I++++  +RQ +M+SAT P  ++ L   YL +P+ V  +G  +   +  I  L  + +   ++  ++  L T    K  K ++F  TKR  D + ++     +    +HGD  Q +R+  L+ FR G
Sbjct:  184 PIVLVLAPTRELAVQIQKECSKFGKSSRIRNTCVYGGVPRGQQIRELIRGAEIVIATPGRLIDMLEAGKTNLKRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVQQLARDYLNDPIQVQ-IGSLELAASHNITQLVEVVSEFEKRDRLVKHLDTASQDKESKILIFASTKRTCDEITSYLRQDGWPALAIHGDKDQRERDWVLNEFRTG 406          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: CSHA_BACHK (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis subsp. konkukian GN=cshA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.572e-32
Identity = 80/219 (36.53%), Postives = 129/219 (58.90%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 662
            +V+APTRELA QV +E ++      +  + +YGG  I+ Q+RAL      +VGTPGR++D I R  L L  V+ VVLDEAD+ML++GF ED+E IL  +P+  Q ++FSATMP  IR +  +++  P  + +   + +     I  + +     +K  ++ +L+ +       IVF +TKR  D L+ A+  + Y  E +HGD++Q++R   L  F++G
Sbjct:   74 IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLL-DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEG 289          
The following BLAST results are available for this feature:
BLAST of DY258881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP2_EMENI1.228e-3236.00ATP-dependent RNA helicase dbp2 OS=Emericella nidu... [more]
DEAD_HAEIN1.603e-3238.22Cold-shock DEAD box protein A homolog OS=Haemophil... [more]
DEAD_BUCAI1.603e-3236.28Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
DBP2_PICST1.603e-3236.44ATP-dependent RNA helicase DBP2 OS=Pichia stipitis... [more]
DED1_LODEL2.094e-3238.43ATP-dependent RNA helicase DED1 OS=Lodderomyces el... [more]
DBP2_PICGU2.735e-3236.00ATP-dependent RNA helicase DBP2 OS=Pichia guillier... [more]
DED1_CANGA3.572e-3237.66ATP-dependent RNA helicase DED1 OS=Candida glabrat... [more]
DBP3_LODEL3.572e-3234.50ATP-dependent RNA helicase DBP3 OS=Lodderomyces el... [more]
DBP2_CANGA3.572e-3235.27ATP-dependent RNA helicase DBP2 OS=Candida glabrat... [more]
CSHA_BACHK3.572e-3236.53DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DE05FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258881 ID=DY258881; Name=DY258881; organism=Citrus clementina; type=EST; length=671bp
GGAATCCTCTGTGCTTGGTGTTGGCTCCGACAAGAGAACTTGCGAAGCAA
GTTGAGAAGGAATTCCATGAATCTGCACCCAGCTTGGATACCATTTGTGT
TTACGGGGGCACTCCAATTTCTCATCAAATGAGGGCTCTTGACTATGGTG
TTGATGCGGTTGTTGGGACACCCGGTCGTGTTATTGATTTGATTAAGCGC
AATGCTCTCAACTTATCGGAGGTTCAGTTTGTTGTTCTTGATGAAGCTGA
TCAGATGCTTAGTGTTGGCTTTGCTGAAGATGTTGAAGTCATCTTGGAAA
GGTTGCCACAAAATCGACAGGGTATGATGTTTTCTGCGACGATGCCTCCA
TGGATTAGGAGCCTCACAAATAAGTACCTCAAGAATCCATTAACGGTTGA
CCTTGTTGGAGATTCTGATCAAAAGCTAGCTGATGGAATTCCCCTCTATT
CCATTGCAACAAGCATGTATGAAAAACCATCAATTATTGGTCAGCTTATA
ACAGAACATGCAAAAGGTGGAAAATGCATTGTTTTCACTCAAACAAAACG
TGATGCAGACCGCTTGGCTCATGCTATGGCTAAAAGTTATAATTGTGAGC
CTTTGCATGGGGATATCTCACAAAGCCAGAGGGAGAGGACCCTTTCAGCT
TTCCGAGATGGACGTTTCAAT
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