DY258881

Overview
NameDY258881
Unique NameDY258881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: CSHA_BACCZ (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ZK / E33L) GN=cshA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.572e-32
Identity = 80/219 (36.53%), Postives = 129/219 (58.90%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 662
            +V+APTRELA QV +E ++      +  + +YGG  I+ Q+RAL      +VGTPGR++D I R  L L  V+ VVLDEAD+ML++GF ED+E IL  +P+  Q ++FSATMP  IR +  +++  P  + +   + +     I  + +     +K  ++ +L+ +       IVF +TKR  D L+ A+  + Y  E +HGD++Q++R   L  F++G
Sbjct:   74 IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLL-DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEG 289          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: CSHA_BACCR (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=cshA PE=3 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.572e-32
Identity = 80/219 (36.53%), Postives = 129/219 (58.90%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 662
            +V+APTRELA QV +E ++      +  + +YGG  I+ Q+RAL      +VGTPGR++D I R  L L  V+ VVLDEAD+ML++GF ED+E IL  +P+  Q ++FSATMP  IR +  +++  P  + +   + +     I  + +     +K  ++ +L+ +       IVF +TKR  D L+ A+  + Y  E +HGD++Q++R   L  F++G
Sbjct:   74 IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLL-DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEG 289          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: CSHA_BACC1 (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus cereus (strain ATCC 10987) GN=cshA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.572e-32
Identity = 80/219 (36.53%), Postives = 129/219 (58.90%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 662
            +V+APTRELA QV +E ++      +  + +YGG  I+ Q+RAL      +VGTPGR++D I R  L L  V+ VVLDEAD+ML++GF ED+E IL  +P+  Q ++FSATMP  IR +  +++  P  + +   + +     I  + +     +K  ++ +L+ +       IVF +TKR  D L+ A+  + Y  E +HGD++Q++R   L  F++G
Sbjct:   74 IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLL-DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEG 289          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: CSHA_BACAN (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus anthracis GN=cshA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.572e-32
Identity = 80/219 (36.53%), Postives = 129/219 (58.90%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 662
            +V+APTRELA QV +E ++      +  + +YGG  I+ Q+RAL      +VGTPGR++D I R  L L  V+ VVLDEAD+ML++GF ED+E IL  +P+  Q ++FSATMP  IR +  +++  P  + +   + +     I  + +     +K  ++ +L+ +       IVF +TKR  D L+ A+  + Y  E +HGD++Q++R   L  F++G
Sbjct:   74 IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLL-DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEG 289          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: CSHA_BACAH (DEAD-box ATP-dependent RNA helicase cshA OS=Bacillus thuringiensis (strain Al Hakam) GN=cshA PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.572e-32
Identity = 80/219 (36.53%), Postives = 129/219 (58.90%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 662
            +V+APTRELA QV +E ++      +  + +YGG  I+ Q+RAL      +VGTPGR++D I R  L L  V+ VVLDEAD+ML++GF ED+E IL  +P+  Q ++FSATMP  IR +  +++  P  + +   + +     I  + +     +K  ++ +L+ +       IVF +TKR  D L+ A+  + Y  E +HGD++Q++R   L  F++G
Sbjct:   74 IVIAPTRELAIQVGEELYKIGKHKRVRILPIYGGQDINRQIRALKKHPHIIVGTPGRILDHINRKTLRLQNVETVVLDEADEMLNMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKV--KAKEVTMPNIQQFYLEVQEKKKFDVLTRLL-DIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIHGDLTQAKRMSVLRKFKEG 289          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DED1_MAGGR (ATP-dependent RNA helicase DED1 OS=Magnaporthe grisea GN=DED1 PE=3 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 4.665e-32
Identity = 86/229 (37.55%), Postives = 134/229 (58.52%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL--ERLP--QNRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 665
            P  L+LAPTREL  Q+  E  + A    +    VYGG  I  Q+R ++ G D +V TPGR++DLI+R  ++L  ++++VLDEAD+ML +GF   +  I+  E +P  Q+RQ +MFSAT P +I+ L   +LK+   L+V  VG + + +   +          +K S +  L++ H  GG  ++F +TKR+AD L+  +  ++     +HGD +Q +RER L  FR GR
Sbjct:  275 PTSLILAPTRELVSQIYDESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVQDRQTLMFSATFPGYIQQLARDFLKDYIFLSVGRVGSTSENITQRV---MEVKHRDDKISHLLDLLSTHG-GGLTLIFVETKRNADELSDFLQNQNLPATSIHGDRTQRERERALEMFRTGR 499          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DDX5_PONAB (Probable ATP-dependent RNA helicase DDX5 OS=Pongo abelii GN=DDX5 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.665e-32
Identity = 83/225 (36.89%), Postives = 128/225 (56.89%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITE--HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 665
            P+CLVLAPTRELA+QV++   E   A  L + C+YGG P   Q+R L+ GV+  + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++  +RQ +M+SAT P  +R L   +LK+ + ++ +G  +      I          EK   + +L+ E    K  K IVF +TKR  D L   M +  +    +HGD SQ +R+  L+ F+ G+
Sbjct:  168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHIN-IGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGK 391          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DDX5_MOUSE (Probable ATP-dependent RNA helicase DDX5 OS=Mus musculus GN=Ddx5 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.665e-32
Identity = 83/225 (36.89%), Postives = 128/225 (56.89%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITE--HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 665
            P+CLVLAPTRELA+QV++   E   A  L + C+YGG P   Q+R L+ GV+  + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++  +RQ +M+SAT P  +R L   +LK+ + ++ +G  +      I          EK   + +L+ E    K  K IVF +TKR  D L   M +  +    +HGD SQ +R+  L+ F+ G+
Sbjct:  168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHIN-IGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGK 391          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DDX5_HUMAN (Probable ATP-dependent RNA helicase DDX5 OS=Homo sapiens GN=DDX5 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.665e-32
Identity = 83/225 (36.89%), Postives = 128/225 (56.89%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITE--HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 665
            P+CLVLAPTRELA+QV++   E   A  L + C+YGG P   Q+R L+ GV+  + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++  +RQ +M+SAT P  +R L   +LK+ + ++ +G  +      I          EK   + +L+ E    K  K IVF +TKR  D L   M +  +    +HGD SQ +R+  L+ F+ G+
Sbjct:  168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHIN-IGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGK 391          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DDX17_MOUSE (Probable ATP-dependent RNA helicase DDX17 OS=Mus musculus GN=Ddx17 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.665e-32
Identity = 82/225 (36.44%), Postives = 128/225 (56.89%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITE--HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 665
            P+CLVLAPTRELA+QV++  + +     L + C+YGG P   Q+R L+ GV+  + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++  +RQ +M+SAT P  +R L   +L++   ++ VG+ +      I          EK   + QL+ E    K  K I+F +TKR  D L   M +  +    +HGD SQ +R+  L+ FR G+
Sbjct:  166 PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQIN-VGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGK 389          
The following BLAST results are available for this feature:
BLAST of DY258881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CSHA_BACCZ3.572e-3236.53DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACCR3.572e-3236.53DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACC13.572e-3236.53DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACAN3.572e-3236.53DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
CSHA_BACAH3.572e-3236.53DEAD-box ATP-dependent RNA helicase cshA OS=Bacill... [more]
DED1_MAGGR4.665e-3237.55ATP-dependent RNA helicase DED1 OS=Magnaporthe gri... [more]
DDX5_PONAB4.665e-3236.89Probable ATP-dependent RNA helicase DDX5 OS=Pongo ... [more]
DDX5_MOUSE4.665e-3236.89Probable ATP-dependent RNA helicase DDX5 OS=Mus mu... [more]
DDX5_HUMAN4.665e-3236.89Probable ATP-dependent RNA helicase DDX5 OS=Homo s... [more]
DDX17_MOUSE4.665e-3236.44Probable ATP-dependent RNA helicase DDX17 OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DE05FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258881 ID=DY258881; Name=DY258881; organism=Citrus clementina; type=EST; length=671bp
GGAATCCTCTGTGCTTGGTGTTGGCTCCGACAAGAGAACTTGCGAAGCAA
GTTGAGAAGGAATTCCATGAATCTGCACCCAGCTTGGATACCATTTGTGT
TTACGGGGGCACTCCAATTTCTCATCAAATGAGGGCTCTTGACTATGGTG
TTGATGCGGTTGTTGGGACACCCGGTCGTGTTATTGATTTGATTAAGCGC
AATGCTCTCAACTTATCGGAGGTTCAGTTTGTTGTTCTTGATGAAGCTGA
TCAGATGCTTAGTGTTGGCTTTGCTGAAGATGTTGAAGTCATCTTGGAAA
GGTTGCCACAAAATCGACAGGGTATGATGTTTTCTGCGACGATGCCTCCA
TGGATTAGGAGCCTCACAAATAAGTACCTCAAGAATCCATTAACGGTTGA
CCTTGTTGGAGATTCTGATCAAAAGCTAGCTGATGGAATTCCCCTCTATT
CCATTGCAACAAGCATGTATGAAAAACCATCAATTATTGGTCAGCTTATA
ACAGAACATGCAAAAGGTGGAAAATGCATTGTTTTCACTCAAACAAAACG
TGATGCAGACCGCTTGGCTCATGCTATGGCTAAAAGTTATAATTGTGAGC
CTTTGCATGGGGATATCTCACAAAGCCAGAGGGAGAGGACCCTTTCAGCT
TTCCGAGATGGACGTTTCAAT
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