DY258881

Overview
NameDY258881
Unique NameDY258881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DDX17_HUMAN (Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens GN=DDX17 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.665e-32
Identity = 82/225 (36.44%), Postives = 128/225 (56.89%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEK--EFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITE--HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 665
            P+CLVLAPTRELA+QV++  + +     L + C+YGG P   Q+R L+ GV+  + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++  +RQ +M+SAT P  +R L   +L++   ++ VG+ +      I          EK   + QL+ E    K  K I+F +TKR  D L   M +  +    +HGD SQ +R+  L+ FR G+
Sbjct:  166 PICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLESGKTNLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLRDYTQIN-VGNLELSANHNILQIVDVCMESEKDHKLIQLMEEIMAEKENKTIIFVETKRRCDDLTRRMRRDGWPAMCIHGDKSQPERDWVLNEFRSGK 389          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DDX17_DROME (ATP-dependent RNA helicase p62 OS=Drosophila melanogaster GN=Rm62 PE=1 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 4.665e-32
Identity = 78/229 (34.06%), Postives = 127/229 (55.46%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEK---EFHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVG---DSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 671
            P+ LVLAPTRELA+Q+++   EF  S+   +T CV+GG P   QMR L  G + V+ TPGR+ID +   + NL    ++VLDEAD+ML +GF   +  I+ ++  +RQ +M+SAT P  ++ L   +L N + +++      ++  +   + +    +   +  +++  +       GK I+F +TKR  D L   +      C  +HGD SQS+R+  L  FR G+ N
Sbjct:  355 PIALVLAPTRELAQQIQQVATEFGSSSYVRNT-CVFGGAPKGGQMRDLQRGCEIVIATPGRLIDFLSAGSTNLKRCTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVKQLAEDFLGNYIQINIGSLELSANHNIRQVVDVCDEFSKEEKLKTLLSDIYDTSESPGKIIIFVETKRRVDNLVRFIRSFGVRCGAIHGDKSQSERDFVLREFRSGKSN 582          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DBP2_ASPOR (ATP-dependent RNA helicase dbp2 OS=Aspergillus oryzae GN=dbp2 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.665e-32
Identity = 81/226 (35.84%), Postives = 130/226 (57.52%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-PLYSIATSMYEKPSIIGQL--ITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 665
            P+ LVLAPTRELA Q++ E  +   S  +   CVYGG P   Q+R L  GV+  + TPGR+ID+++    NL  V ++VLDEAD+ML +GF   +  I+ ++  +RQ  M+SAT P  +R L + +L + + V+ +G  D      I  +  + +   ++  +I  L  I E+ +G KC++FT TKR AD +   + +  +    +HGD  Q +R+  L+ F+ G+
Sbjct:  204 PIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKEVRQLASDFLNDYIQVN-IGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIMEN-RGNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGK 427          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DED1_NEUCR (ATP-dependent RNA helicase ded-1 OS=Neurospora crassa GN=ded-1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.092e-32
Identity = 85/229 (37.12%), Postives = 135/229 (58.95%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL--ERLPQ--NRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 665
            P  L+LAPTREL  Q+  E  + A    +    VYGG  I  Q+R ++ G D +V TPGR++DLI+R  ++L  ++++VLDEAD+ML +GF   +  I+  E +P+  +RQ +MFSAT P  I+ L   +LK+   L+V  VG + + +   +          +K S++  ++  HA GG  ++F +TKR AD L+  +  +++    +HGD +Q +RER L  FR+GR
Sbjct:  280 PTALILAPTRELVSQIYDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLCNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPKVNDRQTLMFSATFPRDIQILARDFLKDYIFLSVGRVGSTSENITQKVEY----VEDIDKRSVLLDILHTHA-GGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGR 503          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DED1_BOTFB (ATP-dependent RNA helicase ded1 OS=Botryotinia fuckeliana (strain B05.10) GN=ded1 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.092e-32
Identity = 85/229 (37.12%), Postives = 133/229 (58.08%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL--ERLP--QNRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 665
            P  L+LAPTREL  Q+  E  + A    +    VYGG  I  Q+R ++ G D +V TPGR++DLI+R  ++L  ++++VLDEAD+ML +GF   +  I+  E +P  QNRQ +MFSAT P  I+ L   +LK+   L+V  VG + + +   +          +K S++  ++  H   G  ++F +TKR AD L+  +  +++    +HGD +Q +RER L  FR+GR
Sbjct:  272 PTSLILAPTRELVSQIYDESRKFAYRSWVRPCVVYGGADIGSQLRQMERGCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPGVQNRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEY----VEDIDKRSVLLDILHTHG-AGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGR 495          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DDX5_PANTR (Probable ATP-dependent RNA helicase DDX5 OS=Pan troglodytes GN=DDX5 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.092e-32
Identity = 83/225 (36.89%), Postives = 128/225 (56.89%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITE--HAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 665
            P+CLVLAPTRELA+QV++   E   A  L + C+YGG P   Q+R L+ GV+  + TPGR+ID ++    NL    ++VLDEAD+ML +GF   +  I++++  +RQ +M+SAT P  +R L   +LK+ + ++ +G  +      I          EK   + +L+ E    K  K IVF +TKR  D L   M +  +    +HGD SQ +R+  L+ F+ G+
Sbjct:  168 PICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVENCIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHIN-IGALELSANHNILQIVDVCHDVEKDEKLIRLMEEIMSEKENKTIVFVETKRRCDELTRKMRRDGWPAMGIHGDKSQQERDWVLNEFKHGK 391          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DBP2_NEOFI (ATP-dependent RNA helicase dbp2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp2 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.092e-32
Identity = 80/226 (35.40%), Postives = 129/226 (57.08%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGI-PLYSIATSMYEKPSIIGQL--ITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 665
            P+ L+LAPTRELA Q++ E  +   S  +   CVYGG P   Q+R L  GV+  + TPGR+ID+++    NL  V ++VLDEAD+ML +GF   +  I+ ++  +RQ  M+SAT P  +R L   +L + + V+ +G  D      I  +  + +   ++  +I  L  I E+ +G KC++FT TKR AD +   + +  +    +HGD  Q +R+  L+ F+ G+
Sbjct:  193 PIVLILAPTRELAVQIQTEISKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGFEPQIRKIISQIRPDRQTCMWSATWPKEVRQLATDFLNDYIQVN-IGSMDLSANHRITQIVEVVSDFEKRDKMIKHLEKIMEN-RGNKCLIFTGTKRIADEITRFLRQDGWPALSIHGDKQQQERDWVLNEFKTGK 416          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH5_ORYSJ (DEAD-box ATP-dependent RNA helicase 5 OS=Oryza sativa subsp. japonica GN=Os07g0301200 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.957e-32
Identity = 83/224 (37.05%), Postives = 128/224 (57.14%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHES-AP-SLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYL-KNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEH-AKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 662
            P  LVL+PTRELA+Q+     E+ AP  + ++C+YGGT    Q+ AL  GVD V+GTPGR+ DLI+     L++V FVVLDEAD+ML +GF  +V  IL +    RQ +MFSAT PP +  L  +++  NP+ V +  +      D + +  +         ++  L   H A+  + +VF   KR+A R+   +  + ++   +HGD +Q  R + LS F++G
Sbjct:  168 PRVLVLSPTRELAQQIADVLCEAGAPCGISSVCLYGGTSKGPQISALKSGVDIVIGTPGRMKDLIEMGICRLNDVSFVVLDEADRMLDMGFEPEVRAILSQTASVRQTVMFSATWPPAVHQLAQEFMDPNPIKVVIGSEDLAANHDVMQIVEVLDDRSRDSRLVALLDKYHKAQRNRVLVFVLYKREATRVETMLQRRGWSAVSVHGDKAQHDRTKALSLFKEG 391          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DED1_SCLS1 (ATP-dependent RNA helicase ded1 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=ded1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.957e-32
Identity = 85/229 (37.12%), Postives = 133/229 (58.08%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL--ERLP--QNRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 665
            P  L+LAPTREL  Q+  E  + A    +    VYGG  I  Q+R ++ G D +V TPGR++DLI+R  ++L  ++++VLDEAD+ML +GF   +  I+  E +P  QNRQ +MFSAT P  I+ L   +LK+   L+V  VG + + +   +          +K S++  ++  H   G  ++F +TKR AD L+  +  +++    +HGD +Q +RER L  FR+GR
Sbjct:  272 PTSLILAPTRELVSQIFDESRKFAYRSWVRPCVVYGGADIGSQLRQMERGCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPGVQNRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEY----VEDIDKRSVLLDILHTHG-AGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEMFRNGR 495          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DED1_PICST (ATP-dependent RNA helicase DED1 OS=Pichia stipitis GN=DED1 PE=3 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 7.957e-32
Identity = 87/229 (37.99%), Postives = 133/229 (58.08%), Query Frame = 3
Query:    3 NPLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP----QNRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 662
            +P  LV+APTREL  Q+  E  + A    +    VYGG  I  Q+R LD G D +V TPGR+ DL++R  ++L+ ++++VLDEAD+ML +GF   +  I++       Q+RQ +MFSAT P  I+ L   +LK+   L+V  VG + + +   I    +     EK S++  L++     G  I+FT+TKR AD LA  +  + +    +HGD SQ +RE+ L+AF+ G
Sbjct:  251 HPTILVMAPTRELVSQIYDEAKKFAYRSWVKPAVVYGGADIGQQIRNLDKGCDLLVATPGRLKDLLERGRVSLANIKYLVLDEADRMLDMGFEPQIRHIVQECDMPDVQDRQTLMFSATFPTDIQMLARDFLKDYIFLSVGRVGSTSENITQKI----LYVEDEEKKSVLLDLLSA-GDAGLTIIFTETKRMADNLADFLYDQGFPATAIHGDRSQYEREKALAAFKSG 474          
The following BLAST results are available for this feature:
BLAST of DY258881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX17_HUMAN4.665e-3236.44Probable ATP-dependent RNA helicase DDX17 OS=Homo ... [more]
DDX17_DROME4.665e-3234.06ATP-dependent RNA helicase p62 OS=Drosophila melan... [more]
DBP2_ASPOR4.665e-3235.84ATP-dependent RNA helicase dbp2 OS=Aspergillus ory... [more]
DED1_NEUCR6.092e-3237.12ATP-dependent RNA helicase ded-1 OS=Neurospora cra... [more]
DED1_BOTFB6.092e-3237.12ATP-dependent RNA helicase ded1 OS=Botryotinia fuc... [more]
DDX5_PANTR6.092e-3236.89Probable ATP-dependent RNA helicase DDX5 OS=Pan tr... [more]
DBP2_NEOFI6.092e-3235.40ATP-dependent RNA helicase dbp2 OS=Neosartorya fis... [more]
RH5_ORYSJ7.957e-3237.05DEAD-box ATP-dependent RNA helicase 5 OS=Oryza sat... [more]
DED1_SCLS17.957e-3237.12ATP-dependent RNA helicase ded1 OS=Sclerotinia scl... [more]
DED1_PICST7.957e-3237.99ATP-dependent RNA helicase DED1 OS=Pichia stipitis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DE05FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258881 ID=DY258881; Name=DY258881; organism=Citrus clementina; type=EST; length=671bp
GGAATCCTCTGTGCTTGGTGTTGGCTCCGACAAGAGAACTTGCGAAGCAA
GTTGAGAAGGAATTCCATGAATCTGCACCCAGCTTGGATACCATTTGTGT
TTACGGGGGCACTCCAATTTCTCATCAAATGAGGGCTCTTGACTATGGTG
TTGATGCGGTTGTTGGGACACCCGGTCGTGTTATTGATTTGATTAAGCGC
AATGCTCTCAACTTATCGGAGGTTCAGTTTGTTGTTCTTGATGAAGCTGA
TCAGATGCTTAGTGTTGGCTTTGCTGAAGATGTTGAAGTCATCTTGGAAA
GGTTGCCACAAAATCGACAGGGTATGATGTTTTCTGCGACGATGCCTCCA
TGGATTAGGAGCCTCACAAATAAGTACCTCAAGAATCCATTAACGGTTGA
CCTTGTTGGAGATTCTGATCAAAAGCTAGCTGATGGAATTCCCCTCTATT
CCATTGCAACAAGCATGTATGAAAAACCATCAATTATTGGTCAGCTTATA
ACAGAACATGCAAAAGGTGGAAAATGCATTGTTTTCACTCAAACAAAACG
TGATGCAGACCGCTTGGCTCATGCTATGGCTAAAAGTTATAATTGTGAGC
CTTTGCATGGGGATATCTCACAAAGCCAGAGGGAGAGGACCCTTTCAGCT
TTCCGAGATGGACGTTTCAAT
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