DY259707

Overview
NameDY259707
Unique NameDY259707
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length979
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA3_ORYSJ (Auxin-responsive protein IAA3 OS=Oryza sativa subsp. japonica GN=IAA3 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 4.445e-52
Identity = 108/176 (61.36%), Postives = 129/176 (73.30%), Query Frame = 1
Query:  136 QVPALNENEPTSAP---AAKAQVVGWPPIRSFRKNTMASNLVKNN-DAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 651
            +V A  E++  +AP   AAKAQVVGWPPIRS+RKNTMA+N +K+N +  + K G G LYVKVSMDGAPYLRKVDLK Y NY ++S  LEKMF  F+ G+         +G    +        EYVLTYED+DGDWMLVGDVPW+MFT++CRRLRIMKGS+AIGLAPRA EK KNR
Sbjct:  102 EVGAEEEDKKVAAPPQPAAKAQVVGWPPIRSYRKNTMATNQIKSNKEDVDAKQGQGFLYVKVSMDGAPYLRKVDLKTYKNYKDMSLGLEKMFIGFSTGK---------EGAENQK------DGEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSDAIGLAPRAGEKSKNR 262          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA7_ARATH (Auxin-responsive protein IAA7 OS=Arabidopsis thaliana GN=IAA7 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 5.805e-52
Identity = 105/171 (61.40%), Postives = 131/171 (76.61%), Query Frame = 1
Query:  169 SAPAAKAQVVGWPPIRSFRKNTMASNLVKNN--DAAEGKSGS------GCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEK-CKNRT 654
            S P AKAQVVGWPP+R++RKN M      +   +A+  K+G+      G   VKVSMDGAPYLRKVDLK+Y +Y +LS AL KMFS FT+G   + G+   D ++ES+LM+LL+ SEYV +YED+DGDWMLVGDVPW+MF E+C+RLRIMKGSEA+GLAPRAMEK CKNR+
Sbjct:   75 SKPPAKAQVVGWPPVRNYRKNMMTQQKTSSGAEEASSEKAGNFGGGAAGAGLVKVSMDGAPYLRKVDLKMYKSYQDLSDALAKMFSSFTMGNYGAQGMI--DFMNESKLMNLLNSSEYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAVGLAPRAMEKYCKNRS 243          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSJ (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. japonica GN=IAA5 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.095e-50
Identity = 94/155 (60.65%), Postives = 118/155 (76.13%), Query Frame = 1
Query:  175 PAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEK 639
            PAAKAQVVGWPP+R++RKNT+A++  K     +G +  G LYVKVSMDGAPYLRKVDLK+YS+Y +LS ALEKMFSCF  GQ        +D L+     D L   EYVLTYED+D DWMLVGD+PWD+FT  CR+L+IM+GS+A G+APR++E+
Sbjct:  112 PAAKAQVVGWPPVRNYRKNTLAASASKGKGEDKGTAEGGPLYVKVSMDGAPYLRKVDLKMYSSYEDLSMALEKMFSCFITGQSGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDLPWDLFTTICRKLKIMRGSDAAGIAPRSIEQ 266          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA5_ORYSI (Auxin-responsive protein IAA5 OS=Oryza sativa subsp. indica GN=IAA5 PE=2 SV=2)

HSP 1 Score: 200.675 bits (509), Expect = 1.095e-50
Identity = 94/155 (60.65%), Postives = 118/155 (76.13%), Query Frame = 1
Query:  175 PAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEK 639
            PAAKAQVVGWPP+R++RKNT+A++  K     +G +  G LYVKVSMDGAPYLRKVDLK+YS+Y +LS ALEKMFSCF  GQ        +D L+     D L   EYVLTYED+D DWMLVGD+PWD+FT  CR+L+IM+GS+A G+APR++E+
Sbjct:  113 PAAKAQVVGWPPVRNYRKNTLAASASKGKGEDKGTAEGGPLYVKVSMDGAPYLRKVDLKMYSSYEDLSMALEKMFSCFITGQSGLRKSSNRDRLTNGSKADALQDQEYVLTYEDKDADWMLVGDLPWDLFTTICRKLKIMRGSDAAGIAPRSIEQ 267          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA17_ARATH (Auxin-responsive protein IAA17 OS=Arabidopsis thaliana GN=IAA17 PE=1 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 4.599e-49
Identity = 99/163 (60.74%), Postives = 127/163 (77.91%), Query Frame = 1
Query:  175 PAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGL----SESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNR 651
            P AKAQVVGWPP+RS+RKN M S   K++   E  +     +VKVSMDGAPYLRK+DL++Y +Y ELS+AL  MFS FT+G+   HG  G++G+    +E +LMDL++  +YV +YED+DGDWMLVGDVPW MF +TC+RLR+MKGS+AIGLAPRAMEKCK+R
Sbjct:   77 PPAKAQVVGWPPVRSYRKNVMVS-CQKSSGGPEAAA-----FVKVSMDGAPYLRKIDLRMYKSYDELSNALSNMFSSFTMGK---HG--GEEGMIDFMNERKLMDLVNSWDYVPSYEDKDGDWMLVGDVPWPMFVDTCKRLRLMKGSDAIGLAPRAMEKCKSR 228          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA11_ORYSJ (Auxin-responsive protein IAA11 OS=Oryza sativa subsp. japonica GN=IAA11 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.790e-46
Identity = 96/165 (58.18%), Postives = 114/165 (69.09%), Query Frame = 1
Query:  154 ENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKN 648
            E +P    A KAQVVGWPP+RSFRKN +A                    VKVSMDGAPYLRK+D+ +Y +Y ELS A + MF+ FTIG+C SH    Q     ++L D L   EYV TYED+DGDWMLVGDVPW+MF E+C+RLRIMKGSEAIGLAPRA+EKCK+
Sbjct:   88 EPDPDKPRAPKAQVVGWPPVRSFRKNVLAEKC------------KAAALVKVSMDGAPYLRKIDVAMYKSYPELSMAFQNMFTSFTIGKCGSH----QQLKESNKLRDDL---EYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEAIGLAPRAVEKCKS 233          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSJ (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. japonica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.612e-44
Identity = 95/191 (49.74%), Postives = 118/191 (61.78%), Query Frame = 1
Query:  115 PVQEKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNND-----------AAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNRT 654
            P  EK  +       +    PA KAQ VGWPP+RSFR+N M    VK+             AA     +   +VKVSMDGAPYLRKVDLK+Y++Y +LS AL+KMF  FT               +    M+ ++GS+ V TYED+DGDWMLVGDVPW MF E+C+RLRIMKGSEAIGLAPRA +K KN++
Sbjct:   61 PAAEKAKRPAEAAAADAEKPPAPKAQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFT---------------ATGNNMNEVNGSDAVTTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGSEAIGLAPRAKDKYKNKS 236          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA13_ORYSI (Auxin-responsive protein IAA13 OS=Oryza sativa subsp. indica GN=IAA13 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.612e-44
Identity = 95/191 (49.74%), Postives = 118/191 (61.78%), Query Frame = 1
Query:  115 PVQEKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNND-----------AAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAMEKCKNRT 654
            P  EK  +       +    PA KAQ VGWPP+RSFR+N M    VK+             AA     +   +VKVSMDGAPYLRKVDLK+Y++Y +LS AL+KMF  FT               +    M+ ++GS+ V TYED+DGDWMLVGDVPW MF E+C+RLRIMKGSEAIGLAPRA +K KN++
Sbjct:   61 PAAEKAKRPAEAAAADAEKPPAPKAQAVGWPPVRSFRRNIMTVQSVKSKKEEEADKQQQQPAANASGSNSSAFVKVSMDGAPYLRKVDLKMYNSYKDLSLALQKMFGTFT---------------ATGNNMNEVNGSDAVTTYEDKDGDWMLVGDVPWQMFVESCKRLRIMKGSEAIGLAPRAKDKYKNKS 236          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA15_ORYSJ (Auxin-responsive protein IAA15 OS=Oryza sativa subsp. japonica GN=IAA15 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 3.304e-39
Identity = 86/162 (53.09%), Postives = 108/162 (66.67%), Query Frame = 1
Query:  148 LNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALE-KMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRA 630
            L      S P+ KA+VVGWPP+R+FRKN +A        A    S S   +VKV++DGAPYLRKVDL+ Y  Y +L +AL+ K FS FTI +          G  E +L+D + G+EYV TYED+DGDWMLVGDVPW MF ETC+RLR+MK SEA+ LAPR+
Sbjct:   67 LGSTATESPPSPKARVVGWPPVRAFRKNALA--------ALAAASSSKAKFVKVAVDGAPYLRKVDLEAYRGYDQLLAALQDKFFSHFTIRKL---------GNEEMKLVDAVSGNEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPRS 211          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA1_ORYSJ (Auxin-responsive protein IAA1 OS=Oryza sativa subsp. japonica GN=IAA1 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.640e-38
Identity = 96/213 (45.07%), Postives = 125/213 (58.69%), Query Frame = 1
Query:   43 SPRGGLD--DKCKIVKEVDVLPLSPKPVQEKKNQVP-------ALNENEPTSA-----PAAKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALE-KMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRAME 636
            S   GLD  D    ++    L  +  P  ++K   P       A + + P +A     PA KA+VVGWPP+RSFRKN +A+                  +VKV++DGAPYLRKVDL+ YS Y +L  AL+ K FS FTI +             E +L+D ++G+EYV TYED+DGDWMLVGDVPW MF ETC+RLR+MK SEA+ LAPRA +
Sbjct:   13 SAASGLDFEDTALTLRLPGSLAAAAAPDPDRKRSSPSSSDAADAADNSSPLAAAADAPPAPKARVVGWPPVRSFRKNALAAK-----------------FVKVAVDGAPYLRKVDLEAYSGYDQLLRALQDKFFSHFTIRKFAD---------DERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPRAAQ 199          
The following BLAST results are available for this feature:
BLAST of DY259707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
IAA3_ORYSJ4.445e-5261.36Auxin-responsive protein IAA3 OS=Oryza sativa subs... [more]
IAA7_ARATH5.805e-5261.40Auxin-responsive protein IAA7 OS=Arabidopsis thali... [more]
IAA5_ORYSJ1.095e-5060.65Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA5_ORYSI1.095e-5060.65Auxin-responsive protein IAA5 OS=Oryza sativa subs... [more]
IAA17_ARATH4.599e-4960.74Auxin-responsive protein IAA17 OS=Arabidopsis thal... [more]
IAA11_ORYSJ2.790e-4658.18Auxin-responsive protein IAA11 OS=Oryza sativa sub... [more]
IAA13_ORYSJ2.612e-4449.74Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA13_ORYSI2.612e-4449.74Auxin-responsive protein IAA13 OS=Oryza sativa sub... [more]
IAA15_ORYSJ3.304e-3953.09Auxin-responsive protein IAA15 OS=Oryza sativa sub... [more]
IAA1_ORYSJ1.640e-3845.07Auxin-responsive protein IAA1 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DB11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259707 ID=DY259707; Name=DY259707; organism=Citrus clementina; type=EST; length=979bp
GGTAAACCTGATGCCGAGTTGGGTAAAGGTGCTGTCTTGTATTCTCCTAG
AGGTGGGTTAGATGATAAGTGCAAGATCGTGAAGGAAGTTGATGTCTTGC
CTCTGTCTCCTAAGCCAGTTCAAGAGAAGAAGAATCAAGTCCCTGCTTTA
AATGAAAATGAACCAACTAGTGCCCCTGCTGCAAAGGCACAGGTGGTGGG
ATGGCCACCAATTCGATCTTTCCGGAAGAACACCATGGCCTCTAATTTGG
TAAAGAACAATGATGCCGCTGAAGGCAAGTCGGGATCTGGATGTCTCTAT
GTAAAGGTTAGCATGGATGGTGCTCCATATCTAAGGAAGGTTGATCTCAA
AATCTACAGCAATTACATGGAACTCTCTTCAGCTCTTGAGAAGATGTTCA
GCTGCTTTACCATTGGGCAATGTGATTCTCATGGTCTTCCGGGGCAAGAC
GGCCTAAGTGAGAGTCGTCTGATGGATCTTCTCCATGGTTCTGAATATGT
GCTTACATATGAAGACAGGGATGGTGACTGGATGCTTGTTGGTGATGTCC
CTTGGGATATGTTCACTGAGACGTGTAGAAGACTTCGCATCATGAAAGGT
TCAGAGGCTATTGGACTGGCTCCAAGGGCCATGGAGAAGTGCAAGAACCG
AACTTAGTGTCGCAAATATCTTGAAAGACTTAAAAAGGGAGAAAATTTGT
TTTTTTCAGAATCCAAACACGTGAAAAGATGTTAGGCATTTTTGTCAAGG
ACCCTATTATTATATAAATGTTATCAAATATCATAAGTTTGCTGTATTTA
ATTAGTTAATATGGGGAAAACATCCCTCTAAACAAGATAGCACTGCAAAC
ATATCCGTTTCACGTTTGTTTTAGTATTATATTTTGTCCTCCTTTACTTT
TCCGGGAAATTTTTTTATTTGGGAACAAAATATAAATGATTTGCTTGTTG
GTTTCCAGTTTGCCACTCTTCCCTGTTTA
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