DY259707

Overview
NameDY259707
Unique NameDY259707
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length979
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA26_ORYSJ (Auxin-responsive protein IAA26 OS=Oryza sativa subsp. japonica GN=IAA26 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.921e-24
Identity = 55/111 (49.55%), Postives = 69/111 (62.16%), Query Frame = 1
Query:  298 YVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPRA 630
            +VKVSMDG PYLRKVD+  Y +Y+EL  AL  MF C TIG  D +G                   E+ + YED DGDWMLVGDVPW+MF  +C+R+R+M+  EA GL+  A
Sbjct:   47 FVKVSMDGTPYLRKVDVAAYGDYLELVEALNDMFYCSTIGLMDGYG-----------------EWEHAVVYEDGDGDWMLVGDVPWEMFVSSCKRMRVMRACEARGLSSNA 140          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA16_ORYSJ (Auxin-responsive protein IAA16 OS=Oryza sativa subsp. japonica GN=IAA16 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.541e-23
Identity = 68/168 (40.48%), Postives = 91/168 (54.17%), Query Frame = 1
Query:  151 NENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKN------NDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCD-------SHGLPGQDGLSESR-LMDLLHGS--EYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSE 606
            N+    S PAA   VVGWPP+RSFR+N  +S+          + AA    G    +VKV+MDG P  RKVDL  +  Y ELS+A++++F      Q D       +    G+    E   +  LL G   EY L YED +GD MLVGDVPW+MF    RRLR+++ S+
Sbjct:   46 NDGFKASRPAAP--VVGWPPVRSFRRNLASSSSSSKPPRGGRDAAAAATGGKVARFVKVNMDGVPIGRKVDLAAHGGYGELSAAVDRLFRGLLAAQRDPTMATAAAAAAAGESCTGEEEAIAGLLDGGSGEYTLVYEDDEGDQMLVGDVPWNMFIAAARRLRVLRSSD 211          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA7_ORYSJ (Auxin-responsive protein IAA7 OS=Oryza sativa subsp. japonica GN=IAA7 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.662e-23
Identity = 62/165 (37.58%), Postives = 90/165 (54.55%), Query Frame = 1
Query:  133 NQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASN-----LVKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSES-RLMDLLHGS-EYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSE 606
            N   A N N      +    VVGWPP+R+FR+N   S+     L     AA+ +      ++K++MDG P  RK+DL  + +Y +LS A++K+F      Q D      +D   E   +  LL G+ EY L YED +GD +LVGDVPW MF  + +RLR++K S+
Sbjct:  119 NNALASNNNGCFQTRSPSTPVVGWPPVRTFRRNLATSSKASLELQNGKKAAKAEEIKRAPFIKINMDGVPIGRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTGEYTLVYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSD 283          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA28_ARATH (Auxin-responsive protein IAA28 OS=Arabidopsis thaliana GN=IAA28 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 9.657e-23
Identity = 63/149 (42.28%), Postives = 86/149 (57.72%), Query Frame = 1
Query:  187 AQVVGWPPIRSFRKNTMAS--NLVKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGLAPR 627
            A VVGWPP+RS R+N  A     +K  ++ E K     LYVK++M+G P  RKV+L  Y+NY +LS A++++FS     + DS  L  Q                Y L YED +GD +LVGDVPW+MF  T +RL ++K S A  L+PR
Sbjct:   47 APVVGWPPVRSSRRNLTAQLKEEMKKKESDEEKE----LYVKINMEGVPIGRKVNLSAYNNYQQLSHAVDQLFS-----KKDSWDLNRQ----------------YTLVYEDTEGDKVLVGDVPWEMFVSTVKRLHVLKTSHAFSLSPR 170          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA10_ARATH (Auxin-responsive protein IAA10 OS=Arabidopsis thaliana GN=IAA10 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.151e-22
Identity = 70/182 (38.46%), Postives = 92/182 (50.55%), Query Frame = 1
Query:  154 ENEPTSAPAAKAQV-VGWPPIRSFRKNTMASNL------------------------VKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTI-GQCDSHGLPGQDGLSESRLMDLLHGS-EYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSEAIGL 618
            ++ P +A  A  QV VGWPP+R++R N++ +                           KN+DA   KS    + VKV+MDG    RKVDL    +Y  L   L+ MF  F I          G   + E+    LL GS EY++TY+D+DGDWMLVGDVPW MF  +  RLRIMK S   G+
Sbjct:   80 DSSPAAASNATRQVAVGWPPLRTYRINSLVNQAKSLATEGGLSSGIQKETTKSVVVAAKNDDACFIKSSRTSMLVKVTMDGVIIGRKVDLNALDSYAALEKTLDLMF--FQIPSPVTRSNTQGYKTIKETCTSKLLDGSSEYIITYQDKDGDWMLVGDVPWQMFLGSVTRLRIMKTSIGAGV 259          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA18_ARATH (Auxin-responsive protein IAA18 OS=Arabidopsis thaliana GN=IAA18 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.821e-21
Identity = 63/162 (38.89%), Postives = 87/162 (53.70%), Query Frame = 1
Query:  181 AKAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSG-------------------SGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGS-EYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMKGSE 606
            A   VVGWPP+RSFRKN  + +  K  + +   +G                    G ++VK++M G P  RKVDL  +++Y +LS  ++K+F      Q D    P      E  +  LL G+ EY LTYED +GD MLVGDVPW MF  + +RLR++K SE
Sbjct:   93 APGPVVGWPPVRSFRKNLASGSSSKLGNDSTTSNGVTLKNQKCDAAAKTTEPKRQGGMFVKINMYGVPIGRKVDLSAHNSYEQLSFTVDKLFRGLLAAQRD---FPSSIE-DEKPITGLLDGNGEYTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKTSE 250          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA25_ORYSJ (Auxin-responsive protein IAA25 OS=Oryza sativa subsp. japonica GN=IAA25 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.014e-20
Identity = 64/179 (35.75%), Postives = 94/179 (52.51%), Query Frame = 1
Query:  112 KPVQEKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASNLVKNND-----------------AAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSE--YVLTYEDRDGDWMLVGDVPWDMFTETCRRLRI 591
            K   E+ +Q P     +  +  A+ AQ+VGWPP+R+FRKN         +D                 AA+ +  S  ++VKV+++G    RK+DLK + +Y  LS AL+ MF  F      S G+  +D    + L  +  GS+  YVL YED +GD MLVGDVPW++F  + +RL I
Sbjct:   66 KAALEQAHQRPNECAVQRENRAASSAQLVGWPPVRAFRKNLSTPKPADADDLMNKVKLCSDEGHGSRCAAQERRSSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFL-----SDGIATRD----NELQQMEEGSKKRYVLVYEDNEGDRMLVGDVPWELFIASVKRLYI 235          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA31_ARATH (Auxin-responsive protein IAA31 OS=Arabidopsis thaliana GN=IAA31 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 8.460e-19
Identity = 63/181 (34.81%), Postives = 91/181 (50.28%), Query Frame = 1
Query:   58 LDDKCKIVKEVDVLPLSPKPVQEKKNQVPALNENEPTSAPAAKAQVVGWPPIRSFRKNTMASN-LVKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWDMFTETCRRLRIMK 597
            + + C       V    P P +   N   +L+   P+++P  +A+   WPPI+S  ++T+    L++  D          L+VKV M+G P  RK+DL ++S Y  L   L  MF    I  C +               D  H   +VLTYED+DGDWM+VGD+PWDMF ET RRL+I +
Sbjct:    3 VSNSCSSFSSSSVDSTKPSPSESSVNL--SLSLTFPSTSPQREARQ-DWPPIKSRLRDTLKGRRLLRRGDDTS-------LFVKVYMEGVPIGRKLDLCVFSGYESLLENLSHMFDTSII--CGNR--------------DRKH---HVLTYEDKDGDWMMVGDIPWDMFLETVRRLKITR 154          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA22_ORYSJ (Auxin-responsive protein IAA22 OS=Oryza sativa subsp. japonica GN=IAA22 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 8.460e-19
Identity = 58/144 (40.28%), Postives = 82/144 (56.94%), Query Frame = 1
Query:  178 AAKAQVVGWPPIRSFRKNTM------ASNLVK-----------NNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEYVLTYEDRDGDWMLVGDVPWD 558
            A+ AQ+VGWPP+R+FRKN        A +L+            + DAA+ +  S  ++VKV+++G    RK+DLK + +Y  LS AL+ MF  F      S G+  +D  +E + M+      YVL YED +GD MLVGDVPWD
Sbjct:   36 ASSAQLVGWPPVRTFRKNLSTPKPADADDLMNKMKPCSDEGHGSRDAAQERRPSSTMFVKVNLEGYAVGRKIDLKAHRSYDSLSQALQSMFHGFL-----SDGIATRD--NELQRMEEGSKKRYVLVYEDNEGDRMLVGDVPWD 172          
BLAST of DY259707 vs. ExPASy Swiss-Prot
Match: IAA9_ORYSJ (Auxin-responsive protein IAA9 OS=Oryza sativa subsp. japonica GN=IAA9 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.554e-17
Identity = 54/139 (38.85%), Postives = 72/139 (51.80%), Query Frame = 1
Query:  184 KAQVVGWPPIRSFRKNTMASNLVKNNDAAEGKSGSGCLYVKVSMDGAPYLRKVDLKIYSNYMELSSALEKMFSCFTIGQCDSHGLPGQDGLSESRLMDLLHGSEY--VLTYEDRDGDWMLVGDVPWDMFTETCRRLRIM 594
            K  VVGWPP+ S R+    +N                 YVKV  +G    RKVDL ++S+Y EL++ L +MF             P  D   E ++ +  HG     V+TYED DGDWMLVGDVPWD F  + +RL+I+
Sbjct:   73 KKTVVGWPPVSSARRACGGAN-----------------YVKVKKEGDAIGRKVDLALHSSYDELAATLARMF-------------PTNDHQGEKKMANDDHGDAAGPVVTYEDGDGDWMLVGDVPWDDFARSVKRLKIL 181          
The following BLAST results are available for this feature:
BLAST of DY259707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
IAA26_ORYSJ3.921e-2449.55Auxin-responsive protein IAA26 OS=Oryza sativa sub... [more]
IAA16_ORYSJ2.541e-2340.48Auxin-responsive protein IAA16 OS=Oryza sativa sub... [more]
IAA7_ORYSJ5.662e-2337.58Auxin-responsive protein IAA7 OS=Oryza sativa subs... [more]
IAA28_ARATH9.657e-2342.28Auxin-responsive protein IAA28 OS=Arabidopsis thal... [more]
IAA10_ARATH2.151e-2238.46Auxin-responsive protein IAA10 OS=Arabidopsis thal... [more]
IAA18_ARATH1.821e-2138.89Auxin-responsive protein IAA18 OS=Arabidopsis thal... [more]
IAA25_ORYSJ2.014e-2035.75Auxin-responsive protein IAA25 OS=Oryza sativa sub... [more]
IAA31_ARATH8.460e-1934.81Auxin-responsive protein IAA31 OS=Arabidopsis thal... [more]
IAA22_ORYSJ8.460e-1940.28Auxin-responsive protein IAA22 OS=Oryza sativa sub... [more]
IAA9_ORYSJ3.554e-1738.85Auxin-responsive protein IAA9 OS=Oryza sativa subs... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI2DB11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259707 ID=DY259707; Name=DY259707; organism=Citrus clementina; type=EST; length=979bp
GGTAAACCTGATGCCGAGTTGGGTAAAGGTGCTGTCTTGTATTCTCCTAG
AGGTGGGTTAGATGATAAGTGCAAGATCGTGAAGGAAGTTGATGTCTTGC
CTCTGTCTCCTAAGCCAGTTCAAGAGAAGAAGAATCAAGTCCCTGCTTTA
AATGAAAATGAACCAACTAGTGCCCCTGCTGCAAAGGCACAGGTGGTGGG
ATGGCCACCAATTCGATCTTTCCGGAAGAACACCATGGCCTCTAATTTGG
TAAAGAACAATGATGCCGCTGAAGGCAAGTCGGGATCTGGATGTCTCTAT
GTAAAGGTTAGCATGGATGGTGCTCCATATCTAAGGAAGGTTGATCTCAA
AATCTACAGCAATTACATGGAACTCTCTTCAGCTCTTGAGAAGATGTTCA
GCTGCTTTACCATTGGGCAATGTGATTCTCATGGTCTTCCGGGGCAAGAC
GGCCTAAGTGAGAGTCGTCTGATGGATCTTCTCCATGGTTCTGAATATGT
GCTTACATATGAAGACAGGGATGGTGACTGGATGCTTGTTGGTGATGTCC
CTTGGGATATGTTCACTGAGACGTGTAGAAGACTTCGCATCATGAAAGGT
TCAGAGGCTATTGGACTGGCTCCAAGGGCCATGGAGAAGTGCAAGAACCG
AACTTAGTGTCGCAAATATCTTGAAAGACTTAAAAAGGGAGAAAATTTGT
TTTTTTCAGAATCCAAACACGTGAAAAGATGTTAGGCATTTTTGTCAAGG
ACCCTATTATTATATAAATGTTATCAAATATCATAAGTTTGCTGTATTTA
ATTAGTTAATATGGGGAAAACATCCCTCTAAACAAGATAGCACTGCAAAC
ATATCCGTTTCACGTTTGTTTTAGTATTATATTTTGTCCTCCTTTACTTT
TCCGGGAAATTTTTTTATTTGGGAACAAAATATAAATGATTTGCTTGTTG
GTTTCCAGTTTGCCACTCTTCCCTGTTTA
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