DY259710

Overview
NameDY259710
Unique NameDY259710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1250
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 7.160e-24
Identity = 54/88 (61.36%), Postives = 63/88 (71.59%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRV 398
            GQV +++APCI + R  G  P   CCSGVRSLN AARTT DR+AACNCLK A   + G+    AA +PS+CGV IPY IS STDCSRV
Sbjct:   32 GQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 9.351e-24
Identity = 49/89 (55.06%), Postives = 68/89 (76.40%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRVR 401
            GQV+++LAPCI ++R GG  PP  CC+G+R++N  A+TT DRQ ACNCLK+   ++ G+  N AA LP +CGV +PYKISPST+C+ V+
Sbjct:   30 GQVSSNLAPCIAYVRGGGAVPPA-CCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.221e-23
Identity = 50/89 (56.18%), Postives = 69/89 (77.53%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRVR 401
            GQV+++LAPCI +++ GG  PP  CC+G+R++N  ARTT DR+AACNCLK+   +I G+ PN AA LP +CGV +PYKIS ST+C+ V+
Sbjct:    4 GQVSSNLAPCINYVKGGGAVPPA-CCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.721e-23
Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRVR 401
            GQVTA LAPC+P+L+  GR P   CC GV++L G+A+TT DR+ AC CLK A   I+GI  N AAG+PS C V IPYKISPSTDCS V+
Sbjct:   28 GQVTAGLAPCLPYLQ--GRGPLGGCCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 3.553e-23
Identity = 55/89 (61.80%), Postives = 65/89 (73.03%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRVR 401
            GQVTA LAPC+P+L+  GR P   CC GV+ L G+A+TT DR+ AC CLK A   I+GI  N AAG+PS C V IPYKISPSTDCS V+
Sbjct:   28 GQVTAGLAPCLPYLQ--GRGPLGGCCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 7.916e-23
Identity = 55/89 (61.80%), Postives = 64/89 (71.91%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRVR 401
            GQVT++LAPC+ +LR  G  P   CC GV++L  +ARTT DRQ AC CLK A   I GI    AAGLPS CGV IPYKISPSTDCS+V+
Sbjct:   28 GQVTSNLAPCLAYLRNTG--PLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.764e-22
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPP-PCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRV 398
            GQVT +LAPC+ +LR+    P P  CC+ VR LN AARTT D++ AC CLK+    + G+  N AAGLP++CGV IPYKISP+TDC+RV
Sbjct:   31 GQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.764e-22
Identity = 52/88 (59.09%), Postives = 63/88 (71.59%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRV 398
            GQV++++A C+ + R  G  P   CCSGVRSLN AARTT DR+AACNCLK A   I G+    AA +PS+CGV +PY IS STDCSRV
Sbjct:   30 GQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.303e-22
Identity = 53/89 (59.55%), Postives = 63/89 (70.79%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRVR 401
            G+VT+ LAPC+P+L   GR P   CC GV+ L GAA+T  DR+ AC CLK A  +I+GI    AAGLP  CGV IPYKISPSTDCS V+
Sbjct:   28 GEVTSGLAPCLPYLE--GRGPLGGCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTVQ 114          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.008e-22
Identity = 52/89 (58.43%), Postives = 63/89 (70.79%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRVR 401
            G VT+ L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A  +I  +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   30 GAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
The following BLAST results are available for this feature:
BLAST of DY259710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP_MAIZE7.160e-2461.36Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP_PRUAV9.351e-2455.06Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP1_PRUDO1.221e-2356.18Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP1_SOLLC2.721e-2361.80Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP1_SOLPN3.553e-2361.80Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP1_TOBAC7.916e-2361.80Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP_DAUCA1.764e-2257.30Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP1_SORBI1.764e-2259.09Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP2_SOLLC2.303e-2259.55Non-specific lipid-transfer protein 2 OS=Solanum l... [more]
NLTP6_LENCU3.008e-2258.43Non-specific lipid-transfer protein 6 OS=Lens culi... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAI3CA06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259710 ID=DY259710; Name=DY259710; organism=Citrus clementina; type=EST; length=1250bp
GGGAGAGGGAGATTTTATGTGTCTACAGTTTGTGAATTTGATTAAGTAGA
CTGATAGCTGATCCTGATCCTGATCAAGTCAAACGCTTTTCTCGGTTCGG
GCGACTGCCCCGGTGACTAATGCCATAACATAGCGGGCAGGTGACAGCCT
CCTTGGCTCCATGCATCCCTTTCCTGAGAACTGGAGGGCGTTTTCCTCCA
CCGCCATGCTGTAGCGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCAC
CCCTGACCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTACTGAACAA
TCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCAATGTGGA
GTCCCAATTCCTTACAAGATCAGCCCCAGCACCGACTGCTCGAGGGTCAG
GTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGATAA
GAATAAATAAATAAAGAATATCTATGTTAATTTCTTTGTCCGAACGAGTC
TCCACTTGTATGAGTTTCACTCTCATGTCATGACTGTATATCTGCTTTTT
ATGCCGTATTAAAGACGTAAACGCGATCTGAGTATTGAGTGACTAATCAT
TCCTAGTTTGTGGTATTAACAGACAACACACTAAAACAAAAAAAAAACCC
CCTCTATTCCTCGTCTGGTTCGGCTTTAAAAAAAAGCCATGCATATCCAT
TTTGTGGCTACAAAAAGGCCCCCAATCCACTCCAAAAAAATTCCTTATTA
GCCTCCCGCTTGAAGCCCCCCATACGGGGACCAATTACCTGGGCCTAACT
GGGTCCCCCCCCCCCCCGGACCAGGTCCCAAATTCCCCCGACGCCCAGAC
CAACAACAATAACGACCTCACCCAAGATCGAACAAAACCCCCTCCCTCGC
ATCTCCCGTGCCCCGCTCCACAACCCGTGACCCCTTCCTTACCCTTCCAG
AAAAAACCATCCTTCCATGCCTGGAAAAACCCTCCCCCAAACCTCCTCTG
CAAAAAGCTCATACCTCCCCGTTCCCCGCACTCTTTATCATCCTGTTTCC
CCCCCCACACCCCCCCCCCCCCCAATCCCCAGCCCCCCCAAAAACCCAAC
CTCCACCTGCCCGTCGCTCATCACGCCCGGGATACAAACTCTCCCGTTCT
TCCATCCCCCTCCGGCGCCTGCCTCTCTTCCCCAGAACCTCTCTTCCCTC
TCAACATTTTCCCCCTTTACTCTCCTCTCTTCTTTTCATTTTCAGATCAA
back to top