DY259710

Overview
NameDY259710
Unique NameDY259710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1250
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.008e-22
Identity = 48/89 (53.93%), Postives = 66/89 (74.16%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRVR 401
            G V +SL+PC+ +L  GG   PPPCC+GV+ LNG A+TTPDRQ AC CL+ A    +G+ P++A+GLP +CGV IPY IS ST+C+ ++
Sbjct:   28 GTVASSLSPCLGYLSKGG-VVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSA---AKGVNPSLASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 3.929e-22
Identity = 52/89 (58.43%), Postives = 63/89 (70.79%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRVR 401
            G VT+ L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A  +I  +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   22 GAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 109          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 5.131e-22
Identity = 52/89 (58.43%), Postives = 63/89 (70.79%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRVR 401
            GQV + LAPC+P+L+  GR P   CC GV+ L GAA++  DR+ AC CLK A   I+GI    AAGLP  CGV IPYKISPSTDCS+V+
Sbjct:   28 GQVQSGLAPCLPYLQ--GRGPLGSCCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKVQ 114          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 8.752e-22
Identity = 51/89 (57.30%), Postives = 62/89 (69.66%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRVR 401
            G VT  L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNC+K A  +I  +  N AA LP +CGV IPYKIS ST+C+ V+
Sbjct:   29 GAVTGDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTVK 116          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 8.752e-22
Identity = 51/89 (57.30%), Postives = 63/89 (70.79%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRVR 401
            G VT+ L+PC+ +L TGG  P P CC GV+ L  AA TTPDRQAACNCLK A  +I  +  N AA LP +CGV IPYKIS +T+C+ V+
Sbjct:   30 GAVTSDLSPCLTYL-TGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTVK 117          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 8.752e-22
Identity = 49/89 (55.06%), Postives = 64/89 (71.91%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRVR 401
            G V+ +L PC+ +L+ GG  P P CC GV+ LNGAARTT DR+AACNCLK +  +I G+KP   A LP +CGV +PY IS ST+C+ +R
Sbjct:   30 GTVSGALVPCLTYLK-GGPGPSPQCCGGVKRLNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.950e-21
Identity = 46/89 (51.69%), Postives = 63/89 (70.79%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRVR 401
            G V  SLAPC  +L  GG   PP CC+GV++LN  A+TTPDRQ AC C++    +I G+ P++A+GLP +CGV IPY IS ST+C+ ++
Sbjct:   28 GTVAGSLAPCATYLSKGG-LVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNIK 115          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.950e-21
Identity = 50/88 (56.82%), Postives = 61/88 (69.32%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRV 398
            GQV ++++PC+ + R GG  P   CCSGVRSLN AA TT DR+ ACNCLK    +I G+    AA +PS+CGV IPY ISPS DCS V
Sbjct:   31 GQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.950e-21
Identity = 50/88 (56.82%), Postives = 61/88 (69.32%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRV 398
            GQV ++++PC+ + R GG  P   CCSGVRSLN AA TT DR+ ACNCLK    +I G+    AA +PS+CGV IPY ISPS DCS V
Sbjct:   30 GQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 116          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.950e-21
Identity = 50/88 (56.82%), Postives = 61/88 (69.32%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRV 398
            GQV ++++PC+ + R GG  P   CCSGVRSLN AA TT DR+ ACNCLK    +I G+    AA +PS+CGV IPY ISPS DCS V
Sbjct:   31 GQVNSAVSPCLSYAR-GGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
The following BLAST results are available for this feature:
BLAST of DY259710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP4_ARATH3.008e-2253.93Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP4_LENCU3.929e-2258.43Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP2_TOBAC5.131e-2258.43Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP5_LENCU8.752e-2257.30Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP2_LENCU8.752e-2257.30Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP1_LENCU8.752e-2255.06Non-specific lipid-transfer protein 1 OS=Lens culi... [more]
NLTP3_ARATH1.950e-2151.69Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTP2_ORYSI1.950e-2156.82Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2B_ORYSJ1.950e-2156.82Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLT2A_ORYSJ1.950e-2156.82Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CA06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259710 ID=DY259710; Name=DY259710; organism=Citrus clementina; type=EST; length=1250bp
GGGAGAGGGAGATTTTATGTGTCTACAGTTTGTGAATTTGATTAAGTAGA
CTGATAGCTGATCCTGATCCTGATCAAGTCAAACGCTTTTCTCGGTTCGG
GCGACTGCCCCGGTGACTAATGCCATAACATAGCGGGCAGGTGACAGCCT
CCTTGGCTCCATGCATCCCTTTCCTGAGAACTGGAGGGCGTTTTCCTCCA
CCGCCATGCTGTAGCGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCAC
CCCTGACCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTACTGAACAA
TCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCAATGTGGA
GTCCCAATTCCTTACAAGATCAGCCCCAGCACCGACTGCTCGAGGGTCAG
GTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGATAA
GAATAAATAAATAAAGAATATCTATGTTAATTTCTTTGTCCGAACGAGTC
TCCACTTGTATGAGTTTCACTCTCATGTCATGACTGTATATCTGCTTTTT
ATGCCGTATTAAAGACGTAAACGCGATCTGAGTATTGAGTGACTAATCAT
TCCTAGTTTGTGGTATTAACAGACAACACACTAAAACAAAAAAAAAACCC
CCTCTATTCCTCGTCTGGTTCGGCTTTAAAAAAAAGCCATGCATATCCAT
TTTGTGGCTACAAAAAGGCCCCCAATCCACTCCAAAAAAATTCCTTATTA
GCCTCCCGCTTGAAGCCCCCCATACGGGGACCAATTACCTGGGCCTAACT
GGGTCCCCCCCCCCCCCGGACCAGGTCCCAAATTCCCCCGACGCCCAGAC
CAACAACAATAACGACCTCACCCAAGATCGAACAAAACCCCCTCCCTCGC
ATCTCCCGTGCCCCGCTCCACAACCCGTGACCCCTTCCTTACCCTTCCAG
AAAAAACCATCCTTCCATGCCTGGAAAAACCCTCCCCCAAACCTCCTCTG
CAAAAAGCTCATACCTCCCCGTTCCCCGCACTCTTTATCATCCTGTTTCC
CCCCCCACACCCCCCCCCCCCCCAATCCCCAGCCCCCCCAAAAACCCAAC
CTCCACCTGCCCGTCGCTCATCACGCCCGGGATACAAACTCTCCCGTTCT
TCCATCCCCCTCCGGCGCCTGCCTCTCTTCCCCAGAACCTCTCTTCCCTC
TCAACATTTTCCCCCTTTACTCTCCTCTCTTCTTTTCATTTTCAGATCAA
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