DY259710

Overview
NameDY259710
Unique NameDY259710
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1250
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP8_ARATH (Non-specific lipid-transfer protein 8 OS=Arabidopsis thaliana GN=LTP8 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.496e-13
Identity = 35/86 (40.70%), Postives = 50/86 (58.14%), Query Frame = 3
Query:  141 VTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRV 398
            V   L PC+ +L +G   PP  CC GV+SL  A  T+ D++AAC C+K    ++  +KP +A  L S CG  +P   SP+ DC+ V
Sbjct:   31 VLQDLQPCVSYLTSGSGNPPETCCDGVKSLAAATTTSADKKAACQCIKSVANSVT-VKPELAQALASNCGASLPVDASPTVDCTTV 115          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP7_ARATH (Non-specific lipid-transfer protein 7 OS=Arabidopsis thaliana GN=LTP7 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.496e-13
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGG-RFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TI-RGIKPNVAAGLPSQCGVPIPY--KISPSTDCS 392
            G+V ++L PC  +L  GG   P P CC+GVR LNG   TT DR+ AC C+K A   +  G+  + AAG+P +CG+ IPY  +I  +T C+
Sbjct:   30 GEVNSNLKPCTGYLTNGGITSPGPQCCNGVRKLNGMVLTTLDRRQACRCIKNAARNVGPGLNADRAAGIPRRCGIKIPYSTQIRFNTKCN 119          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP5_ARATH (Non-specific lipid-transfer protein 5 OS=Arabidopsis thaliana GN=LTP5 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.267e-12
Identity = 43/90 (47.78%), Postives = 51/90 (56.67%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRG-IKPNVAAGLPSQCGVPIPYKISPSTDCSRVR 401
            G VT SL  C  +L  GG F P  CCSGV+ LN  ARTT DRQ AC C++ A   +   +    AA LP  C V I Y IS  T+C+ VR
Sbjct:   30 GAVTGSLGQCYNYLTRGG-FIPRGCCSGVQRLNSLARTTRDRQQACRCIQGAARALGSRLNAGRAARLPGACRVRISYPISARTNCNTVR 118          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP6_ARATH (Non-specific lipid-transfer protein 6 OS=Arabidopsis thaliana GN=LTP6 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.654e-12
Identity = 38/90 (42.22%), Postives = 53/90 (58.89%), Query Frame = 3
Query:  141 VTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNV---AAGLPSQCGVPIPYKISPSTDCSRVR 401
            V A L PC+ ++  GG  P   CC+G+ +L   A+T+ DRQ  C C+K A   +  + P     A  LPS+CGV +PYK SPSTDC  ++
Sbjct:   26 VIADLYPCLSYVTQGGPVPTL-CCNGLTTLKSQAQTSVDRQGVCRCIKSAIGGLT-LSPRTIQNALELPSKCGVDLPYKFSPSTDCDSIQ 113          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTPA_ARATH (Non-specific lipid-transfer protein 10 OS=Arabidopsis thaliana GN=LTP10 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.814e-12
Identity = 35/89 (39.33%), Postives = 52/89 (58.43%), Query Frame = 3
Query:  141 VTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIR--GIKPNVAAGLPSQCGVPIPYKISPSTDCSRVR 401
            V A+L PC+ ++  GG  P   CC+G+R L+  A +  D+Q  C C+K     +    I    AA LP +CGV +PYKI PST+C+ ++
Sbjct:   29 VQANLYPCVVYVVQGGAIPYS-CCNGIRMLSKQATSASDKQGVCRCIKSVVGRVSYSSIYLKKAAALPGKCGVKLPYKIDPSTNCNSIK 116          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTP_PINTA (Non-specific lipid-transfer protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.120e-11
Identity = 37/91 (40.66%), Postives = 50/91 (54.95%), Query Frame = 3
Query:  138 QVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLK---RAY*TIRGIKPNVAAGLPSQCGV-PIPYKISPSTDCSRV 398
            QV +++ PC  +L      P   CC  +R L+   + TPDRQA CNCLK   ++Y    G+K   AA LP  C V  +   ISP+ DCS+V
Sbjct:   36 QVVSAMTPCATYLIGNAATPAATCCPSIRGLDSQVKATPDRQAVCNCLKTQAKSY----GVKLGKAANLPGLCKVTDLNVPISPNVDCSKV 122          
BLAST of DY259710 vs. ExPASy Swiss-Prot
Match: NLTPB_RICCO (Non-specific lipid-transfer protein B OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.951e-11
Identity = 34/88 (38.64%), Postives = 48/88 (54.55%), Query Frame = 3
Query:  135 GQVTASLAPCIPFLRTGGRFPPPPCCSGVRSLNGAARTTPDRQAACNCLKRAY*TIRGIKPNVAAGLPSQCGVPIPYKISPSTDCSRV 398
            GQV  +L+ C+PFL      P   CC+GV  L   A T  D++ AC C+K A      I+ + A+ LP +CGV I   IS +T+C  +
Sbjct:    4 GQVNKALSSCVPFLTGFDTTPSLTCCAGVMELKRLAPTVKDKRIACECVKTAAARYPNIREDAASSLPYKCGVVINVPISKTTNCHEI 91          
The following BLAST results are available for this feature:
BLAST of DY259710 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
NLTP8_ARATH1.496e-1340.70Non-specific lipid-transfer protein 8 OS=Arabidops... [more]
NLTP7_ARATH1.496e-1344.44Non-specific lipid-transfer protein 7 OS=Arabidops... [more]
NLTP5_ARATH1.267e-1247.78Non-specific lipid-transfer protein 5 OS=Arabidops... [more]
NLTP6_ARATH1.654e-1242.22Non-specific lipid-transfer protein 6 OS=Arabidops... [more]
NLTPA_ARATH4.814e-1239.33Non-specific lipid-transfer protein 10 OS=Arabidop... [more]
NLTP_PINTA3.120e-1140.66Non-specific lipid-transfer protein OS=Pinus taeda... [more]
NLTPB_RICCO6.951e-1138.64Non-specific lipid-transfer protein B OS=Ricinus c... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3CA06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259710 ID=DY259710; Name=DY259710; organism=Citrus clementina; type=EST; length=1250bp
GGGAGAGGGAGATTTTATGTGTCTACAGTTTGTGAATTTGATTAAGTAGA
CTGATAGCTGATCCTGATCCTGATCAAGTCAAACGCTTTTCTCGGTTCGG
GCGACTGCCCCGGTGACTAATGCCATAACATAGCGGGCAGGTGACAGCCT
CCTTGGCTCCATGCATCCCTTTCCTGAGAACTGGAGGGCGTTTTCCTCCA
CCGCCATGCTGTAGCGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACCAC
CCCTGACCGCCAAGCTGCATGCAACTGCTTGAAACGAGCTTACTGAACAA
TCCGCGGCATCAAACCTAATGTTGCCGCTGGCCTTCCTAGTCAATGTGGA
GTCCCAATTCCTTACAAGATCAGCCCCAGCACCGACTGCTCGAGGGTCAG
GTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGATAA
GAATAAATAAATAAAGAATATCTATGTTAATTTCTTTGTCCGAACGAGTC
TCCACTTGTATGAGTTTCACTCTCATGTCATGACTGTATATCTGCTTTTT
ATGCCGTATTAAAGACGTAAACGCGATCTGAGTATTGAGTGACTAATCAT
TCCTAGTTTGTGGTATTAACAGACAACACACTAAAACAAAAAAAAAACCC
CCTCTATTCCTCGTCTGGTTCGGCTTTAAAAAAAAGCCATGCATATCCAT
TTTGTGGCTACAAAAAGGCCCCCAATCCACTCCAAAAAAATTCCTTATTA
GCCTCCCGCTTGAAGCCCCCCATACGGGGACCAATTACCTGGGCCTAACT
GGGTCCCCCCCCCCCCCGGACCAGGTCCCAAATTCCCCCGACGCCCAGAC
CAACAACAATAACGACCTCACCCAAGATCGAACAAAACCCCCTCCCTCGC
ATCTCCCGTGCCCCGCTCCACAACCCGTGACCCCTTCCTTACCCTTCCAG
AAAAAACCATCCTTCCATGCCTGGAAAAACCCTCCCCCAAACCTCCTCTG
CAAAAAGCTCATACCTCCCCGTTCCCCGCACTCTTTATCATCCTGTTTCC
CCCCCCACACCCCCCCCCCCCCCAATCCCCAGCCCCCCCAAAAACCCAAC
CTCCACCTGCCCGTCGCTCATCACGCCCGGGATACAAACTCTCCCGTTCT
TCCATCCCCCTCCGGCGCCTGCCTCTCTTCCCCAGAACCTCTCTTCCCTC
TCAACATTTTCCCCCTTTACTCTCCTCTCTTCTTTTCATTTTCAGATCAA
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