DY259772

Overview
NameDY259772
Unique NameDY259772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1125
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_RICFE (50S ribosomal protein L2 OS=Rickettsia felis GN=rplB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.754e-16
Identity = 44/113 (38.94%), Postives = 71/113 (62.83%), Query Frame = 2 
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG 679
            P+K +V D+++      D + +IG+C+PL  +  GT +HN+E+  G+GG++ R+AGTS  +L    S +  ++L SG+ +L    C+ATIG++SNP+    NL K G N W G
Sbjct:  107 PQKLSVGDRVISSQ---DADIKIGNCLPLKFIPTGTTLHNVEMKVGKGGQIARSAGTSV-DLVGKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDQKNINLGKAGRNRWLG 215
[Close]
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_DESHY (50S ribosomal protein L2 OS=Desulfitobacterium hafniense (strain Y51) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.754e-16
Identity = 52/140 (37.14%), Postives = 76/140 (54.29%), Query Frame = 2 
Query:  392 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG--PKTVDKRNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKP 805
            D + ++G+ +P+  + +GT++HNIE+ PG+G +LVR+AG S + L      +  LRLPSG+ ++    C+ATIG V N  H   N+ K G + W G  P       NP        G G G+N I    GR  + P GKP
Sbjct:  121 DADIKVGNALPIKNIPVGTLLHNIEMKPGKGAQLVRSAGGSAQ-LMAKEGKYATLRLPSGEMRMVHIDCRATIGQVGNLEHENINIGKAGRSRWLGIRPTVRGAVMNPNDH---PHGGGEGRNPI----GRNPVTPWGKP 252
[Close]
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_DESHD (50S ribosomal protein L2 OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.754e-16
Identity = 52/140 (37.14%), Postives = 76/140 (54.29%), Query Frame = 2 
Query:  392 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG--PKTVDKRNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKP 805
            D + ++G+ +P+  + +GT++HNIE+ PG+G +LVR+AG S + L      +  LRLPSG+ ++    C+ATIG V N  H   N+ K G + W G  P       NP        G G G+N I    GR  + P GKP
Sbjct:  121 DADIKVGNALPIKNIPVGTLLHNIEMKPGKGAQLVRSAGGSAQ-LMAKEGKYATLRLPSGEMRMVHIDCRATIGQVGNLEHENINIGKAGRSRWLGIRPTVRGAVMNPNDH---PHGGGEGRNPI----GRNPVTPWGKP 252
[Close]
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_DICT6 (50S ribosomal protein L2 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.244e-16
Identity = 44/100 (44.00%), Postives = 68/100 (68.00%), Query Frame = 2 
Query:  380 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG 679
            M+  +++ +IG+ +PL  +  GT+IHN+E+ PG+GG+LVRAAGT+ + L +    +  +RLPSG+ +L D  C+ATIG VSN +H   +L K G + W G
Sbjct:  117 MSGENVDIKIGNNLPLKNIPDGTLIHNLELYPGRGGQLVRAAGTAAQILGK-EGKWAYVRLPSGEIRLFDLNCRATIGQVSNVDHQNVSLGKAGRSRWLG 215

HSP 2 Score: 21.1718 bits (43), Expect = 5.244e-16
Identity = 7/13 (53.85%), Postives = 9/13 (69.23%), Query Frame = 1 
Query:  718 LNHPQGEGEGTKP 756
            ++HP G GEG  P
Sbjct:  228 VDHPHGGGEGKAP 240
[Close]
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_STRZT (50S ribosomal protein L2 OS=Streptococcus pneumoniae (strain Taiwan19F-14) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.246e-16
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = 2 
Query:  404 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG 679
            ++G+ +PLA + +GT+IHNIE+ PG+GG+LVRAAG S + L      + L+RL SG+ ++    C+AT+G V N  HG  NL K G + W G
Sbjct:  125 KVGNALPLANIPVGTLIHNIELKPGRGGELVRAAGASAQVLGS-EGKYVLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRSRWKG 215

HSP 2 Score: 20.7866 bits (42), Expect = 5.246e-16
Identity = 7/12 (58.33%), Postives = 8/12 (66.67%), Query Frame = 1 
Query:  721 NHPQGEGEGTKP 756
            +HP G GEG  P
Sbjct:  229 DHPHGGGEGKAP 240
[Close]
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_STRZP (50S ribosomal protein L2 OS=Streptococcus pneumoniae (strain P1031) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.246e-16
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = 2 
Query:  404 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG 679
            ++G+ +PLA + +GT+IHNIE+ PG+GG+LVRAAG S + L      + L+RL SG+ ++    C+AT+G V N  HG  NL K G + W G
Sbjct:  125 KVGNALPLANIPVGTLIHNIELKPGRGGELVRAAGASAQVLGS-EGKYVLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRSRWKG 215

HSP 2 Score: 20.7866 bits (42), Expect = 5.246e-16
Identity = 7/12 (58.33%), Postives = 8/12 (66.67%), Query Frame = 1 
Query:  721 NHPQGEGEGTKP 756
            +HP G GEG  P
Sbjct:  229 DHPHGGGEGKAP 240
[Close]
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_STRZJ (50S ribosomal protein L2 OS=Streptococcus pneumoniae (strain JJA) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.246e-16
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = 2 
Query:  404 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG 679
            ++G+ +PLA + +GT+IHNIE+ PG+GG+LVRAAG S + L      + L+RL SG+ ++    C+AT+G V N  HG  NL K G + W G
Sbjct:  125 KVGNALPLANIPVGTLIHNIELKPGRGGELVRAAGASAQVLGS-EGKYVLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRSRWKG 215

HSP 2 Score: 20.7866 bits (42), Expect = 5.246e-16
Identity = 7/12 (58.33%), Postives = 8/12 (66.67%), Query Frame = 1 
Query:  721 NHPQGEGEGTKP 756
            +HP G GEG  P
Sbjct:  229 DHPHGGGEGKAP 240
[Close]
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_STRR6 (50S ribosomal protein L2 OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.246e-16
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = 2 
Query:  404 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG 679
            ++G+ +PLA + +GT+IHNIE+ PG+GG+LVRAAG S + L      + L+RL SG+ ++    C+AT+G V N  HG  NL K G + W G
Sbjct:  125 KVGNALPLANIPVGTLIHNIELKPGRGGELVRAAGASAQVLGS-EGKYVLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRSRWKG 215

HSP 2 Score: 20.7866 bits (42), Expect = 5.246e-16
Identity = 7/12 (58.33%), Postives = 8/12 (66.67%), Query Frame = 1 
Query:  721 NHPQGEGEGTKP 756
            +HP G GEG  P
Sbjct:  229 DHPHGGGEGKAP 240
[Close]
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_STRPS (50S ribosomal protein L2 OS=Streptococcus pneumoniae (strain CGSP14) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.246e-16
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = 2 
Query:  404 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG 679
            ++G+ +PLA + +GT+IHNIE+ PG+GG+LVRAAG S + L      + L+RL SG+ ++    C+AT+G V N  HG  NL K G + W G
Sbjct:  125 KVGNALPLANIPVGTLIHNIELKPGRGGELVRAAGASAQVLGS-EGKYVLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRSRWKG 215

HSP 2 Score: 20.7866 bits (42), Expect = 5.246e-16
Identity = 7/12 (58.33%), Postives = 8/12 (66.67%), Query Frame = 1 
Query:  721 NHPQGEGEGTKP 756
            +HP G GEG  P
Sbjct:  229 DHPHGGGEGKAP 240
[Close]
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_STRPN (50S ribosomal protein L2 OS=Streptococcus pneumoniae GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 5.246e-16
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = 2 
Query:  404 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG 679
            ++G+ +PLA + +GT+IHNIE+ PG+GG+LVRAAG S + L      + L+RL SG+ ++    C+AT+G V N  HG  NL K G + W G
Sbjct:  125 KVGNALPLANIPVGTLIHNIELKPGRGGELVRAAGASAQVLGS-EGKYVLVRLQSGEVRMILGTCRATVGVVGNEQHGLVNLGKAGRSRWKG 215

HSP 2 Score: 20.7866 bits (42), Expect = 5.246e-16
Identity = 7/12 (58.33%), Postives = 8/12 (66.67%), Query Frame = 1 
Query:  721 NHPQGEGEGTKP 756
            +HP G GEG  P
Sbjct:  229 DHPHGGGEGKAP 240
The following BLAST results are available for this feature:
BLAST of DY259772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_RICFE4.754e-1638.9450S ribosomal protein L2 OS=Rickettsia felis GN=rp... [more]
RL2_DESHY4.754e-1637.1450S ribosomal protein L2 OS=Desulfitobacterium haf... [more]
RL2_DESHD4.754e-1637.1450S ribosomal protein L2 OS=Desulfitobacterium haf... [more]
RL2_DICT65.244e-1644.0050S ribosomal protein L2 OS=Dictyoglomus thermophi... [more]
RL2_STRZT5.246e-1645.6550S ribosomal protein L2 OS=Streptococcus pneumoni... [more]
RL2_STRZP5.246e-1645.6550S ribosomal protein L2 OS=Streptococcus pneumoni... [more]
RL2_STRZJ5.246e-1645.6550S ribosomal protein L2 OS=Streptococcus pneumoni... [more]
RL2_STRR65.246e-1645.6550S ribosomal protein L2 OS=Streptococcus pneumoni... [more]
RL2_STRPS5.246e-1645.6550S ribosomal protein L2 OS=Streptococcus pneumoni... [more]
RL2_STRPN5.246e-1645.6550S ribosomal protein L2 OS=Streptococcus pneumoni... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YC12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259772 ID=DY259772; Name=DY259772; organism=Citrus clementina; type=EST; length=1125bp
CTCACTCAGAAAAACTTTCACGGTGGCTGTCACCTTTCTGCTCAGTGTAT
TCACCCATCTTTCAATTCCACAGCATTCTTTTCTCAGCCGTAGGGTGCTT
TAGCTTCTGTCACCGCCGGTAACATGTTGTGATAGACAGTGAAATCAGCA
GAAGAAAACAAAACGGAGGAGAAAGAGACACAGAAAGAGATCAGCAGAAA
TGGCTTTGTGCAGAGTACGCTCAGCTTCATCGACGCTCTTCAACAGGCTT
CTCTGTCCTTTCGTTCTCAACAACAACACTACTTATCGCTATCAGTCCTC
TGAAACCGAATTAGTTGGTGATCCTTCAAAACAAGAAAAACCAAAAAAAG
AAACTGTGCGTGATAAGATAATGAGACAGATGGCTCATGTTGATATAAAT
TCTCAAATTGGAAGTTGCATGCCACTTGCTTGTATGCGTATTGGGACCAT
CATTCACAACATTGAGGTAAACCCAGGACAAGGTGGCAAGCTAGTTAGAG
CTGCGGGGACGTCAACCAAGAATTTGAAAGAACCCACTTCAAGCTTCTGT
TTATTAAGACTACCTTCTGGTAAAGAAAAACTGAATGACACTAAATGTCA
AGCCACCATTGGTACAGTGTCTAACCCCAACCATGGAGCTAAAAACCTTA
AGAAAGGCGGTCCAAACCCTTGGTTTGGTCCAAAAACCGTGGATAAAAGA
AATAACCCAAAATCCAGTTGAACCATCCTCAGGGGGAAGGGGAGGGGACA
AAACCAAATTAGGGGTTACACGGGACGGGGTTTCATTTAACCCTGAGGGA
AACCTTTGCAAACTTGGGGAATAAAACTCCGTTCCCCAAAAAAAAAAAAA
AAAAATACCCCTCCTAAAAATCACTTCACCTTTTCCAGCCCAGATCACCT
ATTCTCACAAACATACACCACATATTACCTTCTTTCCAAACCAGACGATT
CTACCCACATTTCAAGAATACCAATAAATTTATACTTCCATCTATCTTCC
CCTCCACTCTGCCACTCATTCTTACAATCAATACATAAATAAAACAACAA
CCCCCCCCGCATCTCCCACGAACTATCTCGTTAATCCTCAAAAACAACAG
TCGTACAATCAACACTACAAACAGA
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