DY259772

Overview
NameDY259772
Unique NameDY259772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1125
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_BACAN (50S ribosomal protein L2 OS=Bacillus anthracis GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.109e-16
Identity = 55/154 (35.71%), Postives = 86/154 (55.84%), Query Frame = 2
Query:  371 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFGPKTVDKRNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKPLQTWGIKLR 832
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTS + L +    + L+RL SG+ +L  + C+AT+G V N +H    + K G + W G K    R +  +      G G G++ I   +      P GKP  T G K R
Sbjct:  114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGK-EGKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLG-KRPTVRGSVMNPVDHPHGGGEGRSPIGRKSPMS---PWGKP--TLGFKTR 260          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_BACAH (50S ribosomal protein L2 OS=Bacillus thuringiensis (strain Al Hakam) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.109e-16
Identity = 55/154 (35.71%), Postives = 86/154 (55.84%), Query Frame = 2
Query:  371 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFGPKTVDKRNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKPLQTWGIKLR 832
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTS + L +    + L+RL SG+ +L  + C+AT+G V N +H    + K G + W G K    R +  +      G G G++ I   +      P GKP  T G K R
Sbjct:  114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGK-EGKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLG-KRPTVRGSVMNPVDHPHGGGEGRSPIGRKSPMS---PWGKP--TLGFKTR 260          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_BACAC (50S ribosomal protein L2 OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.109e-16
Identity = 55/154 (35.71%), Postives = 86/154 (55.84%), Query Frame = 2
Query:  371 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFGPKTVDKRNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKPLQTWGIKLR 832
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTS + L +    + L+RL SG+ +L  + C+AT+G V N +H    + K G + W G K    R +  +      G G G++ I   +      P GKP  T G K R
Sbjct:  114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGK-EGKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLG-KRPTVRGSVMNPVDHPHGGGEGRSPIGRKSPMS---PWGKP--TLGFKTR 260          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_BACAA (50S ribosomal protein L2 OS=Bacillus anthracis (strain A0248) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.109e-16
Identity = 55/154 (35.71%), Postives = 86/154 (55.84%), Query Frame = 2
Query:  371 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFGPKTVDKRNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKPLQTWGIKLR 832
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTS + L +    + L+RL SG+ +L  + C+AT+G V N +H    + K G + W G K    R +  +      G G G++ I   +      P GKP  T G K R
Sbjct:  114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGK-EGKYVLVRLTSGEVRLVLSACRATVGQVGNESHELIKIGKAGRSRWLG-KRPTVRGSVMNPVDHPHGGGEGRSPIGRKSPMS---PWGKP--TLGFKTR 260          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_AZOC5 (50S ribosomal protein L2 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplB PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.109e-16
Identity = 56/165 (33.94%), Postives = 91/165 (55.15%), Query Frame = 2
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFGPKTVDKRNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKPLQTWGIKLRS 835
            P++  V DK++   A   ++ + G+  PL+ + +GTI+HN+E+  G+GG++ R+AG S   +      + ++RL SG+++L    C AT+G VSNP+H   +L K G + W G   V   N   +   +    G G+ +  G  GR  + P GKP  T G+K RS
Sbjct:  107 PQRLAVGDKVI---AGEQVDVKPGNAAPLSNLPVGTIVHNVEMKIGKGGQIARSAG-SYAQIVGRDQGYVIVRLNSGEQRLIHGACYATVGAVSNPDHMNTSLGKAGRSRWLG---VKPHNRGVTMNPVDHPHGGGEGRTSG--GRHPVTPWGKP--TKGMKTRS 260          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RK2_CHAVU (50S ribosomal protein L2, chloroplastic OS=Chara vulgaris GN=rpl2 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 8.109e-16
Identity = 59/162 (36.42%), Postives = 83/162 (51.23%), Query Frame = 2
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG--PKTVDKRNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKPLQTWG 820
            P+   + D I+  M   D +  +G+ +PL  + +GT IHNIE+ PG+GG+LVRAAGT  + + +    +  +RLPSG+ +L   KC ATIG V NP    +++ K G   W G  PK      NP        G G G+  I    GR       +PL  WG
Sbjct:  107 PRGIKIGDTILSSM---DASIFVGNTLPLTQIPLGTAIHNIELQPGKGGQLVRAAGTVAQVVAK-EGKWTSIRLPSGEVRLIYQKCLATIGQVGNPEFNNQSIGKAGSKRWQGKRPKVRGTAMNPVDH---PHGGGEGRTSI----GR------KRPLTPWG 251          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_GEOTN (50S ribosomal protein L2 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.862e-16
Identity = 41/103 (39.81%), Postives = 66/103 (64.08%), Query Frame = 2
Query:  371 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG 679
            M  M+  + + ++G+ +PL  + +GT++HNIE+ PG+GG+LVRAAGTS + L +    + ++RL SG+ ++   KC+AT+G V N  H   N+ K G   W G
Sbjct:  114 MEIMSGPNADIKVGNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGK-EGKYVIIRLASGEVRMILGKCRATVGEVGNEQHELVNIGKAGRARWLG 215          

HSP 2 Score: 21.1718 bits (43), Expect = 8.862e-16
Identity = 7/13 (53.85%), Postives = 9/13 (69.23%), Query Frame = 1
Query:  718 LNHPQGEGEGTKP 756
            ++HP G GEG  P
Sbjct:  228 VDHPHGGGEGKAP 240          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_RHOPS (50S ribosomal protein L2 OS=Rhodopseudomonas palustris (strain BisB5) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.059e-15
Identity = 60/165 (36.36%), Postives = 91/165 (55.15%), Query Frame = 2
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFGPKTVDKRNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKPLQTWGIKLRS 835
            P++ +V D ++   ++VD+    G+ MPL  M +GTI+HNIE+  G+GG++ R+AGT  + L      + ++RL SG+++L   +C ATIG VSNP+H   ++ K G   W G +     N       I    G G+ +  G  GR  + P GKP  T G K RS
Sbjct:  107 PQRLSVGDSVIAG-SYVDVKP--GNVMPLGNMPVGTIVHNIELKIGKGGQIARSAGTYAQ-LVGRDHDYVIVRLNSGEQRLVHGRCTATIGAVSNPDHMNISIGKAGRKRWLGRR---PHNRGVVMNPIDHPHGGGEGRTSG--GRHPVTPWGKP--TKGKKTRS 260          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_BREBN (50S ribosomal protein L2 OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.059e-15
Identity = 61/166 (36.75%), Postives = 87/166 (52.41%), Query Frame = 2
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG--PKTVDKRNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKPLQTWGIKLR 832
            P    V D+I+   +  D + +IG+ +P+  + +GT IHNIE+ PG+GG+LVRAAGTS + L      F ++RL SG+ +     C+ATIG V N +H   N+ K G + W G  P       NP        G G G+  I     +  + P GKP  T G+K R
Sbjct:  107 PHNLKVGDQIV---SGADADIKIGNALPMEKIPVGTTIHNIELKPGKGGQLVRAAGTSAQLLGR-DGEFVIVRLSSGETRRIHNVCRATIGQVGNLDHELLNIGKAGRSRWLGIRPTVRGSVMNPNDH---PHGGGEGRAPI---GRKAPVTPWGKP--TLGLKTR 260          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_BRASB (50S ribosomal protein L2 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rplB PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.059e-15
Identity = 60/165 (36.36%), Postives = 90/165 (54.55%), Query Frame = 2
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFGPKTVDKRNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKPLQTWGIKLRS 835
            P++  V D I+    +VD+    G+ MPL  M +GTI+HNIEV  G+GG+L R+AGT  + +      + ++RL SG+++L   +C+ TIG VSNP+H   ++ K G   W G +     N   +   I    G G+ +  G  GR  + P GKP  T G K R+
Sbjct:  107 PQRLAVGDTIVAGN-YVDVKP--GNVMPLGNMPVGTIVHNIEVKIGKGGQLARSAGTYAQ-IVGRDQDYVIVRLNSGEQRLVHGRCRGTIGAVSNPDHMNTSIGKAGRKRWMGRR---PHNRGVAMNPIDHPHGGGEGRTSG--GRHPVTPWGKP--TKGKKTRT 260          
The following BLAST results are available for this feature:
BLAST of DY259772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_BACAN8.109e-1635.7150S ribosomal protein L2 OS=Bacillus anthracis GN=... [more]
RL2_BACAH8.109e-1635.7150S ribosomal protein L2 OS=Bacillus thuringiensis... [more]
RL2_BACAC8.109e-1635.7150S ribosomal protein L2 OS=Bacillus anthracis (st... [more]
RL2_BACAA8.109e-1635.7150S ribosomal protein L2 OS=Bacillus anthracis (st... [more]
RL2_AZOC58.109e-1633.9450S ribosomal protein L2 OS=Azorhizobium caulinoda... [more]
RK2_CHAVU8.109e-1636.4250S ribosomal protein L2, chloroplastic OS=Chara v... [more]
RL2_GEOTN8.862e-1639.8150S ribosomal protein L2 OS=Geobacillus thermodeni... [more]
RL2_RHOPS1.059e-1536.3650S ribosomal protein L2 OS=Rhodopseudomonas palus... [more]
RL2_BREBN1.059e-1536.7550S ribosomal protein L2 OS=Brevibacillus brevis (... [more]
RL2_BRASB1.059e-1536.3650S ribosomal protein L2 OS=Bradyrhizobium sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YC12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259772 ID=DY259772; Name=DY259772; organism=Citrus clementina; type=EST; length=1125bp
CTCACTCAGAAAAACTTTCACGGTGGCTGTCACCTTTCTGCTCAGTGTAT
TCACCCATCTTTCAATTCCACAGCATTCTTTTCTCAGCCGTAGGGTGCTT
TAGCTTCTGTCACCGCCGGTAACATGTTGTGATAGACAGTGAAATCAGCA
GAAGAAAACAAAACGGAGGAGAAAGAGACACAGAAAGAGATCAGCAGAAA
TGGCTTTGTGCAGAGTACGCTCAGCTTCATCGACGCTCTTCAACAGGCTT
CTCTGTCCTTTCGTTCTCAACAACAACACTACTTATCGCTATCAGTCCTC
TGAAACCGAATTAGTTGGTGATCCTTCAAAACAAGAAAAACCAAAAAAAG
AAACTGTGCGTGATAAGATAATGAGACAGATGGCTCATGTTGATATAAAT
TCTCAAATTGGAAGTTGCATGCCACTTGCTTGTATGCGTATTGGGACCAT
CATTCACAACATTGAGGTAAACCCAGGACAAGGTGGCAAGCTAGTTAGAG
CTGCGGGGACGTCAACCAAGAATTTGAAAGAACCCACTTCAAGCTTCTGT
TTATTAAGACTACCTTCTGGTAAAGAAAAACTGAATGACACTAAATGTCA
AGCCACCATTGGTACAGTGTCTAACCCCAACCATGGAGCTAAAAACCTTA
AGAAAGGCGGTCCAAACCCTTGGTTTGGTCCAAAAACCGTGGATAAAAGA
AATAACCCAAAATCCAGTTGAACCATCCTCAGGGGGAAGGGGAGGGGACA
AAACCAAATTAGGGGTTACACGGGACGGGGTTTCATTTAACCCTGAGGGA
AACCTTTGCAAACTTGGGGAATAAAACTCCGTTCCCCAAAAAAAAAAAAA
AAAAATACCCCTCCTAAAAATCACTTCACCTTTTCCAGCCCAGATCACCT
ATTCTCACAAACATACACCACATATTACCTTCTTTCCAAACCAGACGATT
CTACCCACATTTCAAGAATACCAATAAATTTATACTTCCATCTATCTTCC
CCTCCACTCTGCCACTCATTCTTACAATCAATACATAAATAAAACAACAA
CCCCCCCCGCATCTCCCACGAACTATCTCGTTAATCCTCAAAAACAACAG
TCGTACAATCAACACTACAAACAGA
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