DY259773

Overview
NameDY259773
Unique NameDY259773
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1033
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: TCPE1_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 2.392e-27
Identity = 70/131 (53.44%), Postives = 92/131 (70.23%), Query Frame = 1
Query:  376 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELS--DRDSLVKSASTSLNSKVVSQ 762
            TSLGPKGMDKM+ +  G+V ITNDGATIL  M+V    AK+LVELS+SQD   GDGTT VVV+AGALL+Q   LL  GIHP  +++    A+  AVD L +++   E S  D + LV++  T+L+SK+VS+
Sbjct:   46 TSLGPKGMDKMLQSPDGDVTITNDGATILELMDVDNQIAKLLVELSRSQDYDIGDGTTGVVVMAGALLEQAEKLLERGIHPIRVAEGYEMASRIAVDHLESISTKYEFSATDIEPLVQTCMTTLSSKIVSR 176          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: TCPE2_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 9.088e-27
Identity = 68/131 (51.91%), Postives = 92/131 (70.23%), Query Frame = 1
Query:  376 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELS--DRDSLVKSASTSLNSKVVSQ 762
            TSLGPKGMDKM+ +  G+V ITNDGATIL  M+V    AK++VELS+SQD   GDGTT VVV+AG+LL+Q   LL  GIHP  +++    A+  AVD L +++   E S  D + LV++  T+L+SK+VS+
Sbjct:   46 TSLGPKGMDKMLQSPDGDVTITNDGATILELMDVDNQIAKLMVELSRSQDYDIGDGTTGVVVMAGSLLEQAEKLLERGIHPIRVAEGYEMASRIAVDHLESISTKYEFSATDIEPLVQTCMTTLSSKIVSR 176          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: THSA_THEAC (Thermosome subunit alpha OS=Thermoplasma acidophilum GN=thsA PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.187e-26
Identity = 65/125 (52.00%), Postives = 88/125 (70.40%), Query Frame = 1
Query:  376 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSK 750
            T+LGPKGMDKM+  + G++II+NDGATIL +M+V  P AKM+VE+SK+QD A GDGTTT VV++G LLKQ   LL  G+HPTVIS+    A   A  ++  +A   + +D  +L K A T+L+ K
Sbjct:   40 TTLGPKGMDKMLVDSIGDIIISNDGATILKEMDVEHPTAKMIVEVSKAQDTAVGDGTTTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIA--EKSTDDATLRKIALTALSGK 162          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: TCPE_YEAST (T-complex protein 1 subunit epsilon OS=Saccharomyces cerevisiae GN=CCT5 PE=1 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 1.550e-26
Identity = 67/133 (50.38%), Postives = 91/133 (68.42%), Query Frame = 1
Query:  376 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSD----RDSLVKSASTSLNSKVVSQ 762
            TSLGP+G+DK++ +  GE+ ITNDGATIL++ME+    AK+LV+LSKSQD   GDGTT VVV+A ALL Q L L+  GIHP  I++   +AA  A+  L      +  S+    RD L+++A TSL SK+VS+
Sbjct:   63 TSLGPRGLDKILISPDGEITITNDGATILSQMELDNEIAKLLVQLSKSQDDEIGDGTTGVVVLASALLDQALELIQKGIHPIKIANGFDEAAKLAISKLEETCDDISASNDELFRDFLLRAAKTSLGSKIVSK 195          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: THSA_SULAC (Thermosome subunit alpha OS=Sulfolobus acidocaldarius GN=thsA PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 2.025e-26
Identity = 60/134 (44.78%), Postives = 93/134 (69.40%), Query Frame = 1
Query:  376 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDS------LVKSASTSLNSKVVS 759
            +SLGP+G+DKM+  + G+V ITNDGATI+ +ME+  PAAK+LVE +K+QDA  GDGTT+ VV+AG LL +   LL   +HPT+I D   KA   A++++  +++ ++++D  S      L K  ST+++SK ++
Sbjct:   37 SSLGPRGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGLLLDKAEELLEQNVHPTIIIDGYKKALTKALEIIDQLSLKIDVNDLSSPTAKAQLKKIVSTTMSSKFIA 170          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: TCPE_RAT (T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.025e-26
Identity = 75/178 (42.13%), Postives = 108/178 (60.67%), Query Frame = 1
Query:  376 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMA--VPVELSDRDSLVKSASTSLNSKVVSQYSTLPGAVTC*KRFIIPGPKPTRFGRFKKYRKLKKLGRTI*DTKLLK 903
            TSLGP G+DKM+    G+V +TNDGATIL+ M+V    AK++VELSKSQD   GDGTT VVV+AGALL++   LL  GIHP  I+D   +AA  A+  L  ++  V V++++ + L+++A T+L SKVV+        +      +       R   F+  +   K+G  + DTKL+K
Sbjct:   50 TSLGPNGLDKMMVDKDGDVTVTNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIQHLDKISDNVLVDINNPEPLIQTAKTTLGSKVVNSCHRQMAEIAV-NAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIK 226          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: TCPE_MOUSE (T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 2.025e-26
Identity = 75/178 (42.13%), Postives = 108/178 (60.67%), Query Frame = 1
Query:  376 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMA--VPVELSDRDSLVKSASTSLNSKVVSQYSTLPGAVTC*KRFIIPGPKPTRFGRFKKYRKLKKLGRTI*DTKLLK 903
            TSLGP G+DKM+    G+V ITNDGATIL+ M+V    AK++VELSKSQD   GDGTT VVV+AGALL++   LL  GIHP  I+D   +AA  A+  L  ++  V V++++ + L+++A T+L SKV++        +      +       R   F+  +   K+G  + DTKL+K
Sbjct:   50 TSLGPNGLDKMMVDKDGDVTITNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQAARIAIQHLDKISDKVLVDINNPEPLIQTAKTTLGSKVINSCHRQMAEIAV-NAVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIK 226          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: THSB_SULTO (Thermosome subunit beta OS=Sulfolobus tokodaii GN=thsB PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.511e-26
Identity = 61/128 (47.66%), Postives = 86/128 (67.19%), Query Frame = 1
Query:  376 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVS 759
            ++ GP+GMDKM+  + G++ ITNDGATIL+KM++  PAAK+LV+++K QD    DGT T V++AG L+K+   LL   IHPT+I     KA   A+  +  +A  V ++D D L K A TSLNSK V+
Sbjct:   48 STYGPRGMDKMLVDSLGDITITNDGATILDKMDLQHPAAKLLVQIAKGQDEETADGTKTAVILAGELVKKAEELLYKEIHPTIIVSGFKKAEEQALKTIEEIAQKVSVNDMDILKKVAMTSLNSKAVA 175          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: THSA_SULTO (Thermosome subunit alpha OS=Sulfolobus tokodaii GN=thsA PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 4.511e-26
Identity = 75/209 (35.89%), Postives = 119/209 (56.94%), Query Frame = 1
Query:  376 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSD------RDSLVKSASTSLNSKVVSQYSTLPGAVTC*KRFIIPGPKPTRFGRFKKYRKL----KKLGRTI*DTKLLKDWFSKKKAIQPHGGPTRGKKPNL 972
            +SLGP+G+DKM+  + G+V ITNDGATI+ +ME+  PAAK+LVE +K+QDA  GDGTT+ VV+AG LL +   LL   IHPT+I +   KA   +++++  +A  +++S+      RD L K   T+++SK ++    +   +      +    +P   G +     L    KK G +I D+ L+      K+ + P G P R +K  +
Sbjct:   38 SSLGPRGLDKMLIDSFGDVTITNDGATIVKEMEIQHPAAKLLVEAAKAQDAEVGDGTTSAVVLAGLLLDKADDLLDQNIHPTIIIEGYKKALNKSLEIIDQLATKIDVSNLNSLATRDQLKKIVYTTMSSKFIAGGEEMDKIMNMVIDAVSIVAEPLPEGGYNVPLDLIKIDKKKGGSIEDSMLVHGLVLDKEVVHP-GMPRRVEKAKI 245          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: THS_METJA (Thermosome subunit OS=Methanocaldococcus jannaschii GN=ths PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.891e-26
Identity = 62/125 (49.60%), Postives = 84/125 (67.20%), Query Frame = 1
Query:  376 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSK 750
            T+LGPKGMDKM+    G++++TNDG TIL +M V  PAAKML+E++K+Q+   GDGTTT VVIAG LL++   LL   IHP+VI +    A   AV+ L ++A  V+  D + L K A TS+  K
Sbjct:   40 TTLGPKGMDKMLVDELGDIVVTNDGVTILKEMSVEHPAAKMLIEVAKTQEKEVGDGTTTAVVIAGELLRKAEELLDQNIHPSVIINGYEMARNKAVEELKSIAKEVKPEDTEMLKKIAMTSITGK 164          
The following BLAST results are available for this feature:
BLAST of DY259773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TCPE1_AVESA2.392e-2753.44T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
TCPE2_AVESA9.088e-2751.91T-complex protein 1 subunit epsilon OS=Avena sativ... [more]
THSA_THEAC1.187e-2652.00Thermosome subunit alpha OS=Thermoplasma acidophil... [more]
TCPE_YEAST1.550e-2650.38T-complex protein 1 subunit epsilon OS=Saccharomyc... [more]
THSA_SULAC2.025e-2644.78Thermosome subunit alpha OS=Sulfolobus acidocaldar... [more]
TCPE_RAT2.025e-2642.13T-complex protein 1 subunit epsilon OS=Rattus norv... [more]
TCPE_MOUSE2.025e-2642.13T-complex protein 1 subunit epsilon OS=Mus musculu... [more]
THSB_SULTO4.511e-2647.66Thermosome subunit beta OS=Sulfolobus tokodaii GN=... [more]
THSA_SULTO4.511e-2635.89Thermosome subunit alpha OS=Sulfolobus tokodaii GN... [more]
THS_METJA5.891e-2649.60Thermosome subunit OS=Methanocaldococcus jannaschi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YC13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259773 ID=DY259773; Name=DY259773; organism=Citrus clementina; type=EST; length=1033bp
ATCAAATTGCAAAATTCTCTCCCACATAAACCCACTTCACTTTACTGTCC
GCCTTGTTCCCTCCAGAACCTCCCCTGAATCTCTGTTTCTAGGGTTTTCG
TAAATTTCATTTCCACTCTCACCCCGATCTTTCCTCTTTGTTTACACTTT
CTGCCACTCCAAAACTCTGATCCGAACAAAATTAGGGTTCTAGGGATCCA
AAAAAATTAGGGTTTTAGGGTTTCTCGATCATACAAAATACAAATGGCAT
CACCAGCAGTAGTACCCTCTCAACCTCGTTCTTCGAAAACGGAGTCCTAC
GTGGACAACAAGCGAAAAGAAGACATCCGCCAAGCCAATATCGTGGCGGC
GCGAGCCGTCGCCGATGCCGTGCGTACCAGTCTTGGCCCCAAAGGCATGG
ACAAGATGATCTCCACAGCCAGCGGGGAGGTCATCATCACCAATGACGGC
GCTACCATCTTGAACAAAATGGAAGTCCTCCAGCCCGCCGCCAAGATGCT
TGTTGAACTCTCCAAGTCTCAGGACGCCGCCGCCGGAGATGGTACCACCA
CCGTCGTCGTCATCGCCGGCGCCTTGTTGAAACAGTGCCTCATCCTGTTG
TCCAGCGGAATCCATCCCACCGTTATCTCCGATACTCTACACAAGGCCGC
GATCCATGCCGTCGATGTGCTCACTGCAATGGCCGTGCCGGTCGAGTTAT
CCGACCGTGACAGCTTGGTTAAGTCCGCGAGCACCTCGTTAAACAGTAAG
GTCGTGAGTCAGTACTCGACCTTACCGGGCGCCGTTACCTGTTGAAAGCG
TTTTATCATTCCTGGACCCAAACCAACCAGATTTGGTCGATTTAAAAAAT
ATAGGAAATTGAAAAAATTAGGAAGGACCATTTGAGATACAAAGTTGTTA
AAGGATTGGTTTTCAAAAAAAAAGGCGATTCAGCCTCACGGGGGCCCAAC
CCGGGGGAAAAAGCCAAATTTGCCGGGATTCATTTTCAAATTTCCCCCCC
AAAAAGAAAAAAACACAAAAACTTTGGGGTTTC
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