DY259785

Overview
NameDY259785
Unique NameDY259785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length858
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259785 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.419e-48
Identity = 101/237 (42.62%), Postives = 141/237 (59.49%), Query Frame = 3
Query:  150 TDSR-EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGDFEDVKLLHDPPPKRKRRPGWDPPIHV 857
            TD R E+L S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++ +  GKP DKPN+V G  VQ+CW KFARY+           G   M+P + +E  DENTI V    G T TG++E  + LHD   K +   G D  +H+
Sbjct:    7 TDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHI 242          
BLAST of DY259785 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 5.393e-48
Identity = 100/237 (42.19%), Postives = 141/237 (59.49%), Query Frame = 3
Query:  150 TDSR-EILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGDFEDVKLLHDPPPKRKRRPGWDPPIHV 857
            TD R E+L S F ++ +       + P + M  + A+Q+INDEL LDGN R NLA+F  TW +    KL+  SINKN++D +EYP +  +  RCVNM+A L++ P   +  AVG  T+GSSEA ML G+A K +W+++ +  GKP +KPN+V G  VQ+CW KFARY+           G   M+P + +E  DENTI V    G T TG++E  + LHD   K +   G D  +H+
Sbjct:    7 TDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQTWDDDNVHKLMDLSINKNWIDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTNKPNLVCGP-VQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHI 242          
BLAST of DY259785 vs. ExPASy Swiss-Prot
Match: GADA_DICDI (Glutamate decarboxylase A OS=Dictyostelium discoideum GN=gadA PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.963e-47
Identity = 100/243 (41.15%), Postives = 145/243 (59.67%), Query Frame = 3
Query:  129 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGDFEDVKLLHDPPPKRKRRPGWDPPIHV 857
            M +   +T+  +    ++AS      I ++ + + S   E    +I DEL+LDGN + NLA+F  T ++ E   L+   I+KN +D DEYP T E+++RCV+++A L+N+P  +    +G  T GSSEA ML G+A K +W++ RK+QGKP+DKPNIVTG  VQ+CW KFA YF             Y+M P +A++  DENTI V   LG T T  +EDVK + +   K ++  G D PIHV
Sbjct:    1 MSLHHVKTNKYKGFYDSYASPPATKEISKYSLKEESNKPEVIRDLIIDELLLDGNAKQNLATFCQTDLDKEIHVLMDKCIDKNMIDKDEYPQTAEIESRCVHILADLWNSP--ESSETIGCSTTGSSEAAMLGGMALKWRWRENRKKQGKPFDKPNIVTGP-VQICWHKFALYFDIELREVPMEHDRYIMTPEEAIKRCDENTIGVIPTLGVTFTLQYEDVKGISEALDKFEKETGLDIPIHV 240          
BLAST of DY259785 vs. ExPASy Swiss-Prot
Match: GADB_DICDI (Glutamate decarboxylase B OS=Dictyostelium discoideum GN=gadB PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.505e-45
Identity = 98/235 (41.70%), Postives = 136/235 (57.87%), Query Frame = 3
Query:  153 DSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGDFEDVKLLHDPPPKRKRRPGWDPPIHV 857
            D  + L   +        I +FK+ D+    E   ++I DEL+LDGN + NLA+F  T ++     ++   I+KN +D DEYP + E++NRC++++A L+N P  D    +G  T GSSEA ML GLA K  W++ RK+ G PYDKPNIVTG  VQ+CW KFA YF           G YVMN  + ++ VDENTI V   LG T T  +EDV  + +   K ++  G + PIHV
Sbjct:    7 DKHKSLYDNYVQSATTEEIAKFKLADDPNEPETIKKLIMDELLLDGNSKQNLATFCQTDLDKNIHSIMDKCIDKNMIDKDEYPQSAEIENRCLHILADLWNAP--DSSDTIGCSTTGSSEAAMLGGLALKWNWRENRKKLGLPYDKPNIVTGP-VQICWHKFALYFDIEIREIPMENGRYVMNSEEVLKRVDENTIGVIPTLGVTFTLQYEDVFSISNALDKFEKESGINIPIHV 238          
BLAST of DY259785 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2)

HSP 1 Score: 177.178 bits (448), Expect = 1.053e-43
Identity = 93/245 (37.96%), Postives = 142/245 (57.96%), Query Frame = 3
Query:  129 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGDFEDVKLLHDPPPKRKRRPGWDPPIHV 857
            M+      D  E L   F S   +  +P++K+   S+    AYQ++ DE++ +GN RLNLA+F  T+MEPE  KL+  ++ KN +D  EYP TTE++NRCVNMIA L+N   ++ +  +G  T+GSSEA ML G+A K  W+++ ++ G   +  KPN+V  +  QVCWEKF  Y+            +  +N  K ++ VDE TI V  I+G T TG ++D+K L +   +  ++  +   IHV
Sbjct:    1 MLYGKENRDEAEFLEPIFGSESEQVDLPKYKLAQQSIEPRVAYQLVQDEMLDEGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWN--ASEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCVYWDIEMREVPMDREHMSINLEKVMDYVDEYTIGVVGIMGITYTGRYDDIKALDNLIEEYNKQTDYKVYIHV 243          
BLAST of DY259785 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.375e-43
Identity = 93/245 (37.96%), Postives = 142/245 (57.96%), Query Frame = 3
Query:  129 MVISTTETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGDFEDVKLLHDPPPKRKRRPGWDPPIHV 857
            M+      D  E L   F S   +  +P++K+   S+    AYQ++ DE++ +GN RLNLA+F  T+MEPE  KL+  ++ KN +D  EYP TTE++NRCVNMIA L+N   ++ +  +G  T+GSSEA ML G+A K  W+++ ++ G   +  KPN+V  +  QVCWEKF  Y+            +  +N  K ++ VDE TI V  I+G T TG ++D+K L +   +  ++  +   IHV
Sbjct:    1 MLYGKENRDEAEFLEPIFGSESEQVDLPKYKLAQQSIEPRVAYQLVQDEMLDEGNARLNLATFCQTYMEPEAVKLMSQTLEKNAIDKSEYPRTTEIENRCVNMIADLWN--ASEKEKFMGTSTIGSSEACMLGGMAMKFSWRKRAEKLGLDINAKKPNLVISSGYQVCWEKFCIYWDIEMREVPMDKEHMSINLDKVMDYVDEYTIGVVGIMGITYTGRYDDIKALDNLIEEYNKQTDYKVYIHV 243          
BLAST of DY259785 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 3.169e-40
Identity = 86/211 (40.76%), Postives = 125/211 (59.24%), Query Frame = 3
Query:  180 FASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGDFEDVKLLHD 806
            F S     +IP++ +    M    AYQ++ D+LM +GN R NLA+F  T+ME E + L+  ++ KN +D  EYP T EL+NRCVN++A L+N P   D + +G  TVGSSEA ML GLA K +W+   +++G      +PN++  +  QVCWEKF  Y+            +  ++  K  +LVDE TI V  ILG T TG F+D++LL +
Sbjct:   19 FGSEEESTSIPKYVLKKEPMEPRIAYQLVKDQLMDEGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCVNILADLWNAP--KDMSYLGTSTVGSSEACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMRVVPMDKNHLSLDVDKVFDLVDEYTIGVVGILGITYTGKFDDIQLLDE 227          
BLAST of DY259785 vs. ExPASy Swiss-Prot
Match: DCE_YEAST (Glutamate decarboxylase OS=Saccharomyces cerevisiae GN=GAD1 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 7.060e-40
Identity = 89/219 (40.64%), Postives = 128/219 (58.45%), Query Frame = 3
Query:  213 RFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYDKPNIVTGANVQVCWEKFARYF-XXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGDFEDVKLLHDPPPK-RKRRPGW---DPPIH 854
            ++ +P   +P + +YQ+I++EL LDGNP LNLASFV T+   +  KL+  ++ KN  D DEYP   EL  RC++M+A L++     D+  +G  T GSSEAIML GLA K++W+ + K  GK   KPNI+  +  QV  EKF RYF             +++++P    + VDENTI    ILG+T TG  E+V+ + D   +   + P W   D PIH
Sbjct:   59 KYSVPKKGLPADLSYQLIHNELTLDGNPHLNLASFVNTFTTDQARKLIDENLTKNLADNDEYPQLIELTQRCISMLAQLWH--ANPDEEPIGCATTGSSEAIMLGGLAMKKRWEHRMKNAGKDASKPNIIMSSACQVALEKFTRYFEVECRLVPVSHRSHHMLDPESLWDYVDENTIGCFVILGTTYTGHLENVEKVADVLSQIEAKHPDWSNTDIPIH 275          
BLAST of DY259785 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.204e-39
Identity = 85/211 (40.28%), Postives = 124/211 (58.77%), Query Frame = 3
Query:  180 FASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPYD--KPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGDFEDVKLLHD 806
            F S     +IP++ +    M    AYQ++ D+LM +GN R NLA+F  T+ME E + L+  ++ KN +D  EYP T EL+NRCVN++A L+N P   + + +G  TVGSSEA ML GLA K +W+   +++G      +PN++  +  QVCWEKF  Y+            +  ++  K  ELVDE TI +  ILG T TG F+D+ LL +
Sbjct:   19 FGSEEESTSIPKYVLKKEPMEPRIAYQLVKDQLMDEGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCVNILADLWNAP--KEMSYLGTSTVGSSEACMLGGLAMKFRWRNNAEKRGLDIQAKRPNLIISSGYQVCWEKFCVYWDVDMRVVPMDKEHLSLDVEKVFELVDEYTIGIVGILGITYTGKFDDIALLDE 227          
BLAST of DY259785 vs. ExPASy Swiss-Prot
Match: DCEB_LISIN (Glutamate decarboxylase beta OS=Listeria innocua GN=gadB PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 8.631e-38
Identity = 85/240 (35.42%), Postives = 133/240 (55.42%), Query Frame = 3
Query:  144 TETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY--DKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGDFEDVKLLHDPPPKRKRRPGWDPPIHV 857
            ++ +    L   F S      IP++ +    +    AY+++ DEL+ +G+ R NLA+F  T+ME E  KL+  ++ KN +D  EYP T EL+NRCVN+IA L++ P   D+  +G  T+GSSEA ML G+A K  W+++ ++ G      KPN+V  +  QVCWEKF  Y+            +  +N  + ++ VDE TI V  ILG T TG ++D+  L++   +   +  +   IHV
Sbjct:    4 SKENKESYLEPVFGSSAEDRDIPKYTLAKEPLEPRIAYRLVKDELLDEGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAP--KDQKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAQKPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKDHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDDIYALNEKLEEYNSKTDYKVYIHV 241          
The following BLAST results are available for this feature:
BLAST of DY259785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCEA_ECO571.419e-4842.62Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEB_ECOL65.393e-4842.19Glutamate decarboxylase beta OS=Escherichia coli O... [more]
GADA_DICDI5.963e-4741.15Glutamate decarboxylase A OS=Dictyostelium discoid... [more]
GADB_DICDI2.505e-4541.70Glutamate decarboxylase B OS=Dictyostelium discoid... [more]
DCE_LACLM1.053e-4337.96Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCE_LACLA1.375e-4337.96Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCEC_LISMO3.169e-4040.76Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCE_YEAST7.060e-4040.64Glutamate decarboxylase OS=Saccharomyces cerevisia... [more]
DCEC_LISIN1.204e-3940.28Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEB_LISIN8.631e-3835.42Glutamate decarboxylase beta OS=Listeria innocua G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YD01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259785 ID=DY259785; Name=DY259785; organism=Citrus clementina; type=EST; length=858bp
GCGAAGTTGTCATCAAAAGTCAAAACTCACTCACTCTCAATCGCTCTCTT
TCCTTTGTGTCTCAACAATTTCTATTCATTTCTCTCAGACTCAAGAGCCT
CTCTTCTCTGCAAAAAACAAAAACAAAAATGGTGATTTCAACAACAGAAA
CAGACTCCAGGGAGATTTTGAGCTCCACATTTGCTTCAAGATATGTCCGT
GCTGCTATTCCCAGATTCAAGATGCCAGATAATTCAATGCCAAAGGAGGC
AGCCTATCAGGTAATAAATGATGAGCTGATGTTAGATGGAAATCCAAGGC
TGAACTTGGCATCTTTTGTGACCACTTGGATGGAGCCCGAGTGTGATAAG
CTTGTCATGGCTTCGATTAATAAAAACTATGTTGACATGGATGAATACCC
TGTAACCACAGAGCTCCAGAATCGGTGTGTGAATATGATTGCCCACCTAT
TTAATACTCCAGTTGCGGATGACAAGACTGCAGTGGGCGTGGGGACTGTA
GGTTCATCAGAGGCAATAATGCTTGCTGGCTTGGCTTTTAAAAGGAAGTG
GCAGCAGAAGAGAAAAGAGCAAGGCAAACCCTATGATAAGCCCAATATAG
TCACTGGAGCTAATGTGCAGGTATGCTGGGAGAAATTTGCGAGGTACTTT
GAGGTTGAGCTGAAGGAGGTGAAACTGGAAGAGGGATATTATGTGATGAA
TCCTGTGAAAGCTGTTGAGTTGGTAGATGAGAACACCATTTGTGTTGCAG
CCATTCTGGGATCAACCTTGACGGGAGATTTTGAGGATGTTAAGCTTCTT
CATGACCCCCCCCCCAAAAGAAAGAGGAGACCGGGTTGGGACCCCCCCAT
TCATGTTG
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