DY259785

Overview
NameDY259785
Unique NameDY259785
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length858
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259785 vs. ExPASy Swiss-Prot
Match: DCEB_LISMO (Glutamate decarboxylase beta OS=Listeria monocytogenes GN=gadB PE=3 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.923e-37
Identity = 85/240 (35.42%), Postives = 133/240 (55.42%), Query Frame = 3
Query:  144 TETDSREILSSTFASRYVRAAIPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY--DKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGDFEDVKLLHDPPPKRKRRPGWDPPIHV 857
            ++ +    L   F S      IP++ +    +    AY+++ DEL+ +G+ R NLA+F  T+ME E  KL+  ++ KN +D  EYP T EL+NRCVN+IA L++ P   D+  +G  T+GSSEA ML G+A K  W+++ ++ G      KPN+V  +  QVCWEKF  Y+            +  +N  + ++ VDE TI V  ILG T TG ++D+  L++   +   +  +   IHV
Sbjct:    4 SKENKESYLEPVFGSSAEDRDIPKYTLGKEPLEPRIAYRLVKDELLDEGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNIIADLWHAP--KDQKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAKKPNLVISSGYQVCWEKFCVYWDIDMRVVPMDKEHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDDIYALNEKLEEYNSKTDYKVYIHV 241          
BLAST of DY259785 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.523e-34
Identity = 77/202 (38.12%), Postives = 119/202 (58.91%), Query Frame = 3
Query:  207 IPRFKMPDNSMPKEAAYQVINDELMLDGNPRLNLASFVTTWMEPECDKLVMASINKNYVDMDEYPVTTELQNRCVNMIAHLFNTPVADDKTAVGVGTVGSSEAIMLAGLAFKRKWQQKRKEQGKPY--DKPNIVTGANVQVCWEKFARYFXXXXXXXXXXXGYYVMNPVKAVELVDENTICVAAILGSTLTGDFEDVKLLHD 806
            +P  +M   S+    AYQ++ D+L+ +G+ R NLA+F  T+MEPE ++++  ++ KN +D  EYP T +L++ CVNM+A L+N  V + +  +G  TVGSSEA ML G+A K +W+    + G      KP++V  +  QVCWEKF  Y+            +  +N    ++ VDE TI +  ILG T TG F+D+  L+D
Sbjct:   23 LPEKRMNKESVDPRIAYQLVKDQLIDEGSARQNLATFCQTYMEPEAEQIMAETMEKNAIDKSEYPQTAKLESSCVNMLADLWN--VDESEHYMGTSTVGSSEACMLGGMAMKFRWRSAALKNGLDIHAKKPSLVISSGYQVCWEKFCVYWDIELREVPMSEEHLSINTDIIMDYVDEYTIGIVGILGITYTGKFDDIMTLND 222          
The following BLAST results are available for this feature:
BLAST of DY259785 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCEB_LISMO1.923e-3735.42Glutamate decarboxylase beta OS=Listeria monocytog... [more]
DCEA_LISMO1.523e-3438.12Glutamate decarboxylase alpha OS=Listeria monocyto... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YD01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259785 ID=DY259785; Name=DY259785; organism=Citrus clementina; type=EST; length=858bp
GCGAAGTTGTCATCAAAAGTCAAAACTCACTCACTCTCAATCGCTCTCTT
TCCTTTGTGTCTCAACAATTTCTATTCATTTCTCTCAGACTCAAGAGCCT
CTCTTCTCTGCAAAAAACAAAAACAAAAATGGTGATTTCAACAACAGAAA
CAGACTCCAGGGAGATTTTGAGCTCCACATTTGCTTCAAGATATGTCCGT
GCTGCTATTCCCAGATTCAAGATGCCAGATAATTCAATGCCAAAGGAGGC
AGCCTATCAGGTAATAAATGATGAGCTGATGTTAGATGGAAATCCAAGGC
TGAACTTGGCATCTTTTGTGACCACTTGGATGGAGCCCGAGTGTGATAAG
CTTGTCATGGCTTCGATTAATAAAAACTATGTTGACATGGATGAATACCC
TGTAACCACAGAGCTCCAGAATCGGTGTGTGAATATGATTGCCCACCTAT
TTAATACTCCAGTTGCGGATGACAAGACTGCAGTGGGCGTGGGGACTGTA
GGTTCATCAGAGGCAATAATGCTTGCTGGCTTGGCTTTTAAAAGGAAGTG
GCAGCAGAAGAGAAAAGAGCAAGGCAAACCCTATGATAAGCCCAATATAG
TCACTGGAGCTAATGTGCAGGTATGCTGGGAGAAATTTGCGAGGTACTTT
GAGGTTGAGCTGAAGGAGGTGAAACTGGAAGAGGGATATTATGTGATGAA
TCCTGTGAAAGCTGTTGAGTTGGTAGATGAGAACACCATTTGTGTTGCAG
CCATTCTGGGATCAACCTTGACGGGAGATTTTGAGGATGTTAAGCTTCTT
CATGACCCCCCCCCCAAAAGAAAGAGGAGACCGGGTTGGGACCCCCCCAT
TCATGTTG
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