DY259789

Overview
NameDY259789
Unique NameDY259789
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length915
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259789 vs. ExPASy Swiss-Prot
Match: ACCO1_PETHY (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Petunia hybrida GN=ACO1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.459e-17
Identity = 60/213 (28.17%), Postives = 99/213 (46.48%), Query Frame = 3
Query:   93 ACQKWGFFQVINHGAPSELKARIEKAAKEFFDQPIEEKQKVKRDEVHPMGYHDQEHTKNVRDWKEVFDFWLQDPTFLPASPEPDDKELRRLTNQWPEYPLGFRELCEDYAREVEKXXXXXXXXXXXXXXXXADRLQGYF---KEQTTFLRFNYYPPCPYPELALGVGPHKDGGALTVLAQDD-VGGLQIKKKSNGEWIPV*PIPDAYIISIGE 719
            AC+ WGFF+++NHG P E+   +EK  K  + + +E++ K   + V        +      DW+  F        FL   P  +  E+       P+    +RE+  D+A+ +EK                   L+  F   K      + + YPPCP P+L  G+  H D G + +L QDD V GLQ+ K  +G+WI V P+  + ++++G+
Sbjct:   27 ACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQRFK---ELVASKALEGVQAEVTDMDWESTF--------FLKHLPISNISEV-------PDLDEEYREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLK--DGQWIDVPPMRHSIVVNLGD 219          
BLAST of DY259789 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSI (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. indica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.459e-17
Identity = 59/218 (27.06%), Postives = 102/218 (46.79%), Query Frame = 3
Query:   81 EVGHACQKWGFFQVINHGAPSELKARIEKAAKEFFDQPIEEKQKVKRDEVHPMGYHDQEHTKNVRDWKEVFDFWLQDPTFLPASPEPDDKELRRLTNQWPEYPLGFRELCEDYAREVEKXXXXXXXXXXXXXXXXADRLQGYFK----EQTTFLRFNYYPPCPYPELALGVGPHKDGGALTVLAQDD-VGGLQIKKKSNGEWIPV*PIPDAYIISIGE 719
            ++  AC+ WGFF+++NHG  +EL   +EK  K+ + +  E++      +    G  D    + + DW+  F        F+   PE +  ++       P+    +R L + +A E+E                    L   F+      T   + + YPPCP P+L  G+  H D G + +L QDD VGGLQ+ K  +GEW+ V P+  + ++++G+
Sbjct:   26 QLDDACENWGFFEILNHGISTELMDEVEKMTKDHYKRVREQRFLEFASKTLKEGCDDVNKAEKL-DWESTF--------FVRHLPESNIADI-------PDLDDDYRRLMKRFAAELETLAERLLDLLCENLGLEKGYLTKAFRGPAGAPTFGTKVSSYPPCPRPDLVKGLRAHTDAGGIILLFQDDSVGGLQLLK--DGEWVDVPPMRHSIVVNLGD 225          
BLAST of DY259789 vs. ExPASy Swiss-Prot
Match: IDS2_HORVU (Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=IDS2 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.211e-17
Identity = 67/236 (28.39%), Postives = 99/236 (41.95%), Query Frame = 3
Query:   27 DDEIPVIDLST---DPKQLVLEVGHACQKWGFFQVINHGAPSELKARIEKAAKEFFDQPIEEKQKV---KRDEVHPMGYHDQEHTKNVRDWKEVFDFWLQDPTFLPASPEPDDKELRRLTNQWPEYPLGFRELCEDYAREVEKXXXXXXXXXXXXXXXXADRLQGYFKEQTTFLRFNYYPPCPYPELALGVGPHKDGGALTVLAQDDVGGLQIKKKSNGEWIPV*PIPDAYIISIG 716
            D  +P+ID+S    + +Q +L+ G   +++GF QV+NHG    +   +     EFFD P E+K +     R E + +       T   + W +V +        L   P  D K+       WP  P   RE+  +Y                       D   G        +  NYYPP P P   LG+ PH D   +TVL    V GL+I  K  G WI V P+P++ +I+ G
Sbjct:   32 DVSLPIIDMSRGRDEVRQAILDSG---KEYGFIQVVNHGISEPMLHEMYAVCHEFFDMPAEDKAEFFSEDRSERNKLFCGSAFETLGEKYWIDVLE-------LLYPLPSGDTKD-------WPHKPQMLREVVGNYTSLARGVAMEILRLLCEGLGLRPDFFVGDISGGRVVVDINYYPPSPNPSRTLGLPPHCDRDLMTVLLPGAVPGLEIAYK--GGWIKVQPVPNSLVINFG 248          
BLAST of DY259789 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.211e-17
Identity = 68/239 (28.45%), Postives = 100/239 (41.84%), Query Frame = 3
Query:   30 DEIPVIDLSTDPKQLVLEVGHACQKWGFFQVINHGAPSELKARIEKAAKEFFDQPIEEKQKVKRDEVHPMGYHDQEHTKNVRDWKEVFDFWLQDPTFLPASPEPDDKELRRLTNQWPEYPLGFRELC---EDYAREVEKXXXXXXXXXXXXXXXXADRLQGYFKEQ------TTFLRFNYYPPCPYPELALGVGPHKDGGALTVLAQDDVGGLQIKKKSNGEWIPV*PIPDAYIISIGE 719
            D +PV+D+  DP      V  A Q WG F +  HG P EL A +E A    F  P  EK +  R      GY     +            W +  TF PA+   D   LR+L   WP+    +R  C   E++ RE+                   +++     E       T  +  N+YP CP P+ ALG+  H D G  T + Q  V GLQ+ +     W+ V  +P A ++++G+
Sbjct:   47 DAVPVVDMR-DPCAAEA-VALAAQDWGAFLLEGHGVPLELLAGVEAAIGGMFALPASEKMRAVRRPGDSCGYGSPPISSFFSKC-----MWSEGYTFSPANLRSD---LRKL---WPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEHKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGD 272          
BLAST of DY259789 vs. ExPASy Swiss-Prot
Match: ACCO1_ORYSJ (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. japonica GN=ACO1 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.211e-17
Identity = 59/218 (27.06%), Postives = 102/218 (46.79%), Query Frame = 3
Query:   81 EVGHACQKWGFFQVINHGAPSELKARIEKAAKEFFDQPIEEKQKVKRDEVHPMGYHDQEHTKNVRDWKEVFDFWLQDPTFLPASPEPDDKELRRLTNQWPEYPLGFRELCEDYAREVEKXXXXXXXXXXXXXXXXADRLQGYFK----EQTTFLRFNYYPPCPYPELALGVGPHKDGGALTVLAQDD-VGGLQIKKKSNGEWIPV*PIPDAYIISIGE 719
            ++  AC+ WGFF+++NHG  +EL   +EK  K+ + +  E++      +    G  D    + + DW+  F        F+   PE +  ++       P+    +R L + +A E+E                    L   F+      T   + + YPPCP P+L  G+  H D G + +L QDD VGGLQ+ K  +GEW+ V P+  + ++++G+
Sbjct:   26 QLDDACENWGFFEILNHGISTELMDEVEKMTKDHYKRVREQRFLEFASKTLKEGCDDVNKAEKL-DWESTF--------FVRHLPESNIADI-------PDLDDDYRRLMKRFAAELETLAERLLDLLCENLGLEKGYLTKAFRGPAGAPTFGTKVSSYPPCPRPDLVEGLRAHTDAGGIILLFQDDRVGGLQLLK--DGEWVDVPPMRHSIVVNLGD 225          
BLAST of DY259789 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.194e-17
Identity = 62/220 (28.18%), Postives = 101/220 (45.91%), Query Frame = 3
Query:   81 EVGHACQKWGFFQVINHGAPSELKARIEKAAKEFFDQPIEEKQKVKRDEVHPM--GYHDQ--EHTKNVRDWKEVFDFWLQDPTFLPASPEPDDKELRRLTNQWPEYPLGFRELCEDYAREVEKXXXXXXXXXXXXXXXXADRLQ---GYFKEQTTFLRFNYYPPCPYPELALGVGPHKDGGALTVLAQDDVGGLQIKKKSNGEWIPV*PIPDAYIISIGE 719
            E+  A  +WG   ++NHG   +L  R++ A + FF+ P+EEK+K   D+      GY  +   +     +W++ F   +           P+DK   R    WP+ P  +     +Y+ ++                    RL+   G  +E     + NYYP CP PELALGV  H D  ALT +  + V GLQ+  +  G+W+    +P++ I+ IG+
Sbjct:   75 ELKKAAMEWGVMHLVNHGISDDLINRVKVAGETFFNLPMEEKEKYANDQASGKIAGYGSKLANNASGQLEWEDYFFHLIF----------PEDK---RDMTIWPKTPSDYVPATCEYSVKLRSLATKILSVLSLGLGLEEGRLEKEVGGMEELLLQKKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYE--GKWVTAKCVPNSIIMHIGD 279          
BLAST of DY259789 vs. ExPASy Swiss-Prot
Match: ACCO_TOBAC (1-aminocyclopropane-1-carboxylate oxidase OS=Nicotiana tabacum GN=ACO PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.194e-17
Identity = 65/238 (27.31%), Postives = 111/238 (46.64%), Query Frame = 3
Query:   30 DEIPVIDLS----TDPKQLVLEVGHACQKWGFFQVINHGAPSELKARIEKAAKEFFDQPIEEKQKVKRDEVHPMGYHDQEHTKNVRDWKEVFDFWLQDPTFLPASPEPDDKELRRLTNQWPEYPLGFRELCEDYAREVEKXXXXXXXXXXXXXXXXADRLQGYF---KEQTTFLRFNYYPPCPYPELALGVGPHKDGGALTVLAQDD-VGGLQIKKKSNGEWIPV*PIPDAYIISIGE 719
            +  P+I+L     ++    +  +  AC+ WGFF+++NHG P E+   +EK  K  + + +E++ K   + V   G    +      DW+  F        FL   P  +  E+  L +Q       +RE+  D+A+ +EK                   L+  F   K      + + YPPCP P+L  G+  H D G + +L QDD V GLQ+ K  +G+WI V P+  + ++++G+
Sbjct:    2 ENFPIINLEKLNGSERADTMEMIKDACENWGFFELVNHGIPHEVMDTVEKMTKGHYKKCMEQRFK---ELVASKGLEAVQAEVTDLDWESTF--------FLRHLPVSNICEVPDLDDQ-------YREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKKIFYGTKGPNFGSKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVTGLQLLK--DGQWIDVPPMRLSIVVNLGD 219          
BLAST of DY259789 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.477e-17
Identity = 76/247 (30.77%), Postives = 114/247 (46.15%), Query Frame = 3
Query:   12 NIMEIDD--EIPVIDLST--DPKQLVLEVGH---ACQKWGFFQVINHGAPSELKARIEKAAKEFFDQPIEEKQKVKRDEVHPMGYHDQEHTKNVR--DWKEVFDFWLQDPTFLPASPEPDDKELRRLTNQWPEYPLGFRELCEDYAREVEKXXXXXXXXXXXXXXXXADRLQGYFKEQTTFLRFN-YYPPCPYPELALGVGPHKDGGALTVLAQ-DDVGGLQIKKKSNGEWIPV*PIPDAYIISIGE 719
            +++ ID+  EIPVIDLS   D +    E+     AC  WGFFQ+INHG   E+  +++   ++FF  P +EK   ++      GY     T   +  DW         D  FL   P  +     R    WP  P  FRE  E Y+ E++K                ++ L    +  T F R +   P        LG+ PH D   LT+L Q ++V GL IKK  + +W+P+ PI  A++++IG+
Sbjct:   41 DVVPIDNSLEIPVIDLSRLLDQQYACDELAKFHSACLDWGFFQLINHGVREEVIEKMKVDTEDFFRLPFKEKNAYRQLPNGMEGYGQAFVTSEEQKLDW--------ADMHFLITKPVQE-----RNMRFWPTSPTSFRETMEKYSMELQKVAMCLTGMMAKNLGLESEILTKPLR--TVFNREDELLPSMSSCGEGLGLSPHSDATGLTLLIQVNEVNGLHIKK--DEKWVPIKPILGAFVVNIGD 270          
BLAST of DY259789 vs. ExPASy Swiss-Prot
Match: ACCO_PEA (1-aminocyclopropane-1-carboxylate oxidase OS=Pisum sativum GN=ACO PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.477e-17
Identity = 64/238 (26.89%), Postives = 113/238 (47.48%), Query Frame = 3
Query:   30 DEIPVID---LSTDPKQLVLE-VGHACQKWGFFQVINHGAPSELKARIEKAAKEFFDQPIEEKQKVKRDEVHPMGYHDQEHTKNVRDWKEVFDFWLQDPTFLPASPEPDDKELRRLTNQWPEYPLGFRELCEDYAREVEKXXXXXXXXXXXXXXXXADRLQGYF---KEQTTFLRFNYYPPCPYPELALGVGPHKDGGALTVLAQDD-VGGLQIKKKSNGEWIPV*PIPDAYIISIGE 719
            +  P++D   L+T+ ++  +E +  AC+ WGFF+ +NHG   E+   +EK  KE + + +E++ K   + V   G    +   +  DW+  F        FL   P     E+       P+    +R++ +++A ++E+                   L+  F   K      + + YPPCP PEL  G+  H D G + +L QDD V GLQ+ K  + +WI V P+  + +I++G+
Sbjct:    2 ENFPIVDMGKLNTEDRKSTMELIKDACENWGFFECVNHGISIEMMDTVEKLTKEHYKKCMEQRFK---EMVATKGLECVQSEIDDLDWESTF--------FLRHLPVSSISEI-------PDLDDDYRKVMKEFALKLEELAEELLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDKVSGLQLLK--DDQWIDVPPMRHSIVINLGD 219          
BLAST of DY259789 vs. ExPASy Swiss-Prot
Match: ACCO4_PETHY (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Petunia hybrida GN=ACO4 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 9.342e-17
Identity = 61/213 (28.64%), Postives = 100/213 (46.95%), Query Frame = 3
Query:   93 ACQKWGFFQVINHGAPSELKARIEKAAKEFFDQPIEEKQKVKRDEVHPMGYHDQEHTKNVRDWKEVFDFWLQDPTFLPASPEPDDKELRRLTNQWPEYPLGFRELCEDYAREVEKXXXXXXXXXXXXXXXXADRLQGYF---KEQTTFLRFNYYPPCPYPELALGVGPHKDGGALTVLAQDD-VGGLQIKKKSNGEWIPV*PIPDAYIISIGE 719
            AC+ WGFF+++NHG P E+   +EK  K  + + +E++ K   + V   G    +      DW+  F        FL   P  +  E+  L ++       +RE+  D+A+ +EK                   L+  F   K      + + YPPCP P+L  G+  H D G + +L QDD V GLQ+ K  + +WI V P+  + +I++G+
Sbjct:   27 ACENWGFFELVNHGIPHEVMDTVEKFTKGHYKKCMEQRFK---ELVASKGLEAVQAEVTDLDWESTF--------FLRHLPVSNISEVPDLDDE-------YREVMRDFAKRLEKLAEELLDLLCENLGLEKGYLKKAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLK--DDQWIDVPPMRHSIVINLGD 219          
The following BLAST results are available for this feature:
BLAST of DY259789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
ACCO1_PETHY2.459e-1728.171-aminocyclopropane-1-carboxylate oxidase 1 OS=Pet... [more]
ACCO1_ORYSI2.459e-1727.061-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
IDS2_HORVU3.211e-1728.39Mugineic-acid 3-dioxygenase OS=Hordeum vulgare GN=... [more]
G3O21_WHEAT3.211e-1728.45Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
ACCO1_ORYSJ3.211e-1727.061-aminocyclopropane-1-carboxylate oxidase 1 OS=Ory... [more]
LDOX_VITVI4.194e-1728.18Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
ACCO_TOBAC4.194e-1727.311-aminocyclopropane-1-carboxylate oxidase OS=Nicot... [more]
NCS1_COPJA5.477e-1730.77S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
ACCO_PEA5.477e-1726.891-aminocyclopropane-1-carboxylate oxidase OS=Pisum... [more]
ACCO4_PETHY9.342e-1728.641-aminocyclopropane-1-carboxylate oxidase 4 OS=Pet... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YD05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259789 ID=DY259789; Name=DY259789; organism=Citrus clementina; type=EST; length=915bp
CAAAGGTTCAAAACATTATGGAAATAGATGATGAAATCCCAGTTATTGAT
CTCTCTACCGACCCCAAACAACTTGTCTTGGAAGTTGGCCATGCATGTCA
AAAGTGGGGATTTTTTCAAGTCATCAATCATGGGGCGCCATCAGAATTAA
AGGCCAGGATTGAAAAGGCAGCAAAAGAATTCTTTGATCAACCAATAGAG
GAGAAGCAGAAAGTGAAAAGAGATGAAGTTCATCCTATGGGATATCATGA
CCAGGAGCATACCAAGAATGTTAGGGACTGGAAGGAAGTGTTTGATTTTT
GGTTGCAAGATCCAACTTTTCTCCCAGCTTCTCCTGAGCCTGATGATAAG
GAGCTGAGGAGGCTCACTAACCAATGGCCTGAGTACCCTCTTGGATTTAG
GGAGTTATGTGAGGATTATGCTAGGGAGGTGGAAAAGCTAGCTTACAAGT
TACTGGAACTTATCTCCCTCAGCTTAGGCTTATCTGCTGATCGGTTGCAA
GGCTATTTTAAAGAACAAACAACCTTTCTGCGATTCAACTACTATCCTCC
TTGCCCTTATCCTGAGCTAGCTCTGGGCGTCGGTCCACACAAAGATGGAG
GTGCCTTAACGGTACTTGCTCAAGATGACGTTGGTGGACTTCAAATAAAG
AAGAAATCAAATGGAGAGTGGATTCCTGTTTAACCAATCCCAGATGCCTA
TATTATTAGCATTGGTGAAGCCCCCCCAGTTTGGAACCAATGATAATTAT
GAAAGTCCAAACCCCAAAGTGGTGGGTCAACCCTAAAAAAGGAAAGTTTT
TCGATTCCATTTCTTTCTTCTACCCGCCCAACAACTCATGATGTAAGCTT
TGTAATAAATTTGAAAAAAAGCCAACTCCCGCCAGGGAACGGCAATCTCG
GCGGGGCAAACTCCG
back to top