DY259818

Overview
NameDY259818
Unique NameDY259818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1049
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB2B_DICDI (Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 3.304e-24
Identity = 56/112 (50.00%), Postives = 77/112 (68.75%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYR 338
            QI  TAGQE++R+IT AYYRGAV A++VYD+TR  +FE++  WL + R  +  ++  +L+GNKADL   R VST +A+ FAEK    F ETSA  +LNV+ AF +   QI +
Sbjct:   76 QIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTDCRKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFEKSTEQILK 187          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 9.613e-24
Identity = 63/151 (41.72%), Postives = 91/151 (60.26%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCC 455
            Q+  TAGQER+R IT+AYYRGA+G LLVYDVT   +F N+E W + ++ + +  + ++LVGNK DL   R VSTE  Q+ A+K    F+E S+  ++NVE  F  V T+I   V++     G++  +      INI   ++ SA K   CC
Sbjct:   63 QVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRIRDTVAKTK---GNESGS----GGINIAEGEENSASK---CC 203          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 2.142e-23
Identity = 62/151 (41.06%), Postives = 88/151 (58.28%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCC 455
            QI  TAGQER+R ITS+YYRG+ G ++VYDVT   +F  V+ WL+E+  +  S ++ +LVGNK DL+  R V  + A+ FA+     F+ETSAL+S NVE+AF  +  QI   +S++ L    +     K    N+  K         GCC
Sbjct:   60 QIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNL----NETTQKKEDKGNVNLKGQSLTNTGGGCC 206          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB8B_RAT (Ras-related protein Rab-8B OS=Rattus norvegicus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.797e-23
Identity = 55/129 (42.64%), Postives = 78/129 (60.47%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALP 389
            QI  TAGQER+R IT+AYYRGA+G +LVYD+T   +F+N++ W++ + +H  S++  M++GNK D+   R VS E  +  A      F+ETSA  S NVE AF  +   I   ++RK  D     A  P
Sbjct:   60 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGP 188          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB8B_PONAB (Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8B PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.797e-23
Identity = 58/139 (41.73%), Postives = 81/139 (58.27%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTK 419
            QI  TAGQER+R IT+AYYRGA+G +LVYD+T   +F+N++ W++ + +H  S++  M++GNK D+   R VS E  +  A      F+ETSA  S NVE AF  +   I   ++RK  D     A  P   T N   K
Sbjct:   60 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSAGAGGPVKITENRSKK 198          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB8B_MOUSE (Ras-related protein Rab-8B OS=Mus musculus GN=Rab8b PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.797e-23
Identity = 55/129 (42.64%), Postives = 78/129 (60.47%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALP 389
            QI  TAGQER+R IT+AYYRGA+G +LVYD+T   +F+N++ W++ + +H  S++  M++GNK D+   R VS E  +  A      F+ETSA  S NVE AF  +   I   ++RK  D     A  P
Sbjct:   60 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSTNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGP 188          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.797e-23
Identity = 58/139 (41.73%), Postives = 81/139 (58.27%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTK 419
            QI  TAGQER+R IT+AYYRGA+G +LVYD+T   +F+N++ W++ + +H  S++  M++GNK D+   R VS E  +  A      F+ETSA  S NVE AF  +   I   ++RK  D     A  P   T N   K
Sbjct:   60 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSAGAGGPVKITENRSKK 198          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.797e-23
Identity = 57/139 (41.01%), Postives = 81/139 (58.27%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTK 419
            QI  TAGQER+R IT+AYYRGA+G +LVYD+T   +F+N++ W++ + +H  S++  M++GNK D+   R VS E  +  A      F+E SA  S+NVE AF  +   I   ++RK  D     A  P   T N   K
Sbjct:   60 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLEASAKSSMNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITENRSKK 198          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.653e-23
Identity = 65/154 (42.21%), Postives = 91/154 (59.09%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQI--YRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCCS 458
            QI  TAGQER+R ITS+YYRGA G ++VYD+T   +F NV++WL E+  + + ++  +LVGNK DL   RAV T  AQ++A++    F+ETSA ES+NVE AF  +   I   +  S+ AL+         KG+ I           K + CCS
Sbjct:   60 QIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAALERKPSNVVQMKGRPI------QQEQQKSSRCCS 207          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.653e-23
Identity = 65/154 (42.21%), Postives = 86/154 (55.84%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADL-RHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCCSA 461
            QI  TAGQER+R IT+AYYRGA+G LLVYDVT   +F N+  W++ +  H   N+  +LVGNKAD+    RAV T   Q+ A++    F ETSA  +LNVE    EV   I R + ++  D      A P   TI    +    A  K+ CC +
Sbjct:   67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVE----EVFFSIARDIKQRLADSDTRQEAQP-SITIKPADQSGNQAAAKSACCGS 215          
The following BLAST results are available for this feature:
BLAST of DY259818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
RAB2B_DICDI3.304e-2450.00Ras-related protein Rab-2B OS=Dictyostelium discoi... [more]
RYL1_YARLI9.613e-2441.72Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
YPT1_YEAST2.142e-2341.06GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB8B_RAT2.797e-2342.64Ras-related protein Rab-8B OS=Rattus norvegicus GN... [more]
RAB8B_PONAB2.797e-2341.73Ras-related protein Rab-8B OS=Pongo abelii GN=RAB8... [more]
RAB8B_MOUSE2.797e-2342.64Ras-related protein Rab-8B OS=Mus musculus GN=Rab8... [more]
RAB8B_HUMAN2.797e-2341.73Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB8B_BOVIN2.797e-2341.01Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]
YPTM1_MAIZE3.653e-2342.21GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RB1BV_BETVU3.653e-2342.21Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YE17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259818 ID=DY259818; Name=DY259818; organism=Citrus clementina; type=EST; length=1049bp
CTCAGATTTCCTTTACCGCCGGCCAAGAACGATATCGTGCTATCACAAGT
GCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGATGTCACCCG
ACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCTTCGGGATC
ACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGGCTGATTTG
CGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTTCGCTGAGAA
AGAGAACACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGTTGAATGTTG
AAAATGCCTTCACCGAAGTGCTCACTCAGATATATCGAGTTGTTAGTAGG
AAGGCTCTTGATGTAGGTGATGACCCAGCAGCCTTGCCCAAGGGTCAAAC
TATTAATATTGGTACTAAAGATGATGTATCGGCTGTGAAAAAGACTGGAT
GCTGCTCTGCATAATCTGCAGCTTCTAAGGAAATTCCAGGTGGTAAATAA
TAGTTTCTTTACCATTCAGACCTTACTTTCCATGAGTATGCAAACACCTT
GCCTTAATTTGCTTGGACCGGAACAAATACAATGTAATCAGCAAAGATCT
CTTCTCTTACCTTCCCCCTTTCCTTGTCGTATCCTCACCTCTGTTCACTT
AAGCGACCCCAACATCTCCCCACCTACCAATCTTACTCGGTATAAGCTTT
TAGATTTATCTCCCACTCTAGTTTACATTATACTCCAGCGAACGTAATAC
GACCTAAAATTAGTTATCAAAAATTCACTATTCTATTATTCCCAAACTGT
ACACCTCTCACGTAATATAGATCTTCAATCTCTTTCTACCAGACTTCGGT
CAATTCCCCCTTACACTACTCCTATACCCTCCATCAGCCAAGCACAGACA
ACAATTGTCATGCATCTCATTACCTCCTAAATCATATAAATTATACTGAC
TATTCCCGTACCTCTACAGGTCAATACATTTTGTAGGTGATACTCTAGAA
CAGCCCCTTCAGCCGTACACTCCACTACTTACCTCCCCCTCAAATCTCC
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