DY259883

Overview
NameDY259883
Unique NameDY259883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length929
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH603_SINMW (60 kDa chaperonin 3 OS=Sinorhizobium medicae (strain WSM419) GN=groL3 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.599e-15
Identity = 44/105 (41.90%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G  +A+DA+V  L S A+ I+   +IA  GT +ANGD  IG  +A+A EK     +  + + KT  + EL++  GM  DRGYLSPYF+TN       L DP
Sbjct:  115 DLKRGIDLAVDAVVKELKSNARKISQNSEIAQVGTISANGDTEIGRYLAEAMEKVGNEGVITVEEAKTSDT-ELEVVEGMQFDRGYLSPYFVTNQDKMRVELEDP 218          

HSP 2 Score: 23.8682 bits (50), Expect = 1.599e-15
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:  541 RKNVFYEIPYIMILEKKVSN 600
            +  V  E PYI+I EKK+SN
Sbjct:  210 KMRVELEDPYILIHEKKLSN 229          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH605_RHIME (60 kDa chaperonin 5 OS=Rhizobium meliloti GN=groL5 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.700e-15
Identity = 44/105 (41.90%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G  +A+DA+V  L + A+ I+   +IA  GT +ANGD  IG  +A+A EK     +  + + KT  + EL++  GM  DRGYLSPYFITN       L DP
Sbjct:  115 DLKRGIDLAVDAVVKELKNNARKISKNSEIAQVGTISANGDTEIGRYLAEAMEKVGNEGVITVEEAKTAET-ELEVVEGMQFDRGYLSPYFITNQDKMRVELEDP 218          

HSP 2 Score: 23.8682 bits (50), Expect = 2.700e-15
Identity = 11/20 (55.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:  541 RKNVFYEIPYIMILEKKVSN 600
            +  V  E PYI+I EKK+SN
Sbjct:  210 KMRVELEDPYILIHEKKLSN 229          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH603_BRASB (60 kDa chaperonin 3 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=groL3 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.559e-15
Identity = 43/105 (40.95%), Postives = 64/105 (60.95%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G  +A+DA+V +L + A+ ITS ++IA  GT +ANGD  IG  +A+A +K  GN   +  +       EL++  GM  DRGY+SPYF+TN +     L DP
Sbjct:  115 DLKRGIDLAVDAIVADLKAHAKKITSNDEIAQVGTISANGDNEIGRFLAEAMQK-VGNEGVITVEEAKSLDTELEVVEGMQFDRGYVSPYFVTNSEKMRVELEDP 218          

HSP 2 Score: 21.557 bits (44), Expect = 4.559e-15
Identity = 10/19 (52.63%), Postives = 13/19 (68.42%), Query Frame = 1
Query:  541 RKNVFYEIPYIMILEKKVS 597
            +  V  E PYI+I EKK+S
Sbjct:  210 KMRVELEDPYILIHEKKLS 228          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH602_RHILE (60 kDa chaperonin 2 OS=Rhizobium leguminosarum GN=groL2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.999e-15
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G  +A+ A+V  L + A+ I++  +IA  GT +ANGD  IG  +A+A EK   + +  + + KT  + EL++  GM  DRGYLSPYF+TN         DP
Sbjct:  115 DLKRGIDLAVAAIVAELKANARKISNNSEIAQVGTISANGDAEIGRFLAEAMEKVGNDGVITVEEAKTAET-ELEVVEGMQFDRGYLSPYFVTNADKMRVEFEDP 218          

HSP 2 Score: 25.409 bits (54), Expect = 9.999e-15
Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:  541 RKNVFYEIPYIMILEKKVSN 600
            +  V +E PYI+I EKK+SN
Sbjct:  210 KMRVEFEDPYILIHEKKLSN 229          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH60_CHRSD (60 kDa chaperonin OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=groL PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.687e-14
Identity = 45/105 (42.86%), Postives = 59/105 (56.19%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G   A+DA V  + S + P T  + IA  GT +ANGD+ IGE+IA A +K  G    +  D       EL++  GM  DRGYLSPYF+TN  T    L DP
Sbjct:  115 DLKRGIDQAVDAAVKEIQSLSVPCTDAKAIAQVGTISANGDKRIGEIIADAMQK-VGKEGVITVDEGRGFEDELEVVEGMQFDRGYLSPYFVTNQDTMMVELEDP 218          

HSP 2 Score: 22.7126 bits (47), Expect = 1.687e-14
Identity = 7/14 (50.00%), Postives = 13/14 (92.86%), Query Frame = 1
Query:  559 EIPYIMILEKKVSN 600
            E PY+++++KK+SN
Sbjct:  216 EDPYLLMVDKKISN 229          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH602_RHISN (60 kDa chaperonin 2 OS=Rhizobium sp. (strain NGR234) GN=groL2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.688e-14
Identity = 42/105 (40.00%), Postives = 61/105 (58.10%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G   A+DA+V  L   A+ +T  ++IA  GT +ANGD  IG  +A+A EK     +  + + KT  + EL++  GM  DRGYLSPYF+TN       L +P
Sbjct:  115 DLKRGVDKAVDAVVEELRRNARKVTKNDEIAQVGTISANGDTEIGRFLAEAMEKVGNEGVITVEEAKTAVT-ELEVVEGMQFDRGYLSPYFVTNPDKMRVELEEP 218          

HSP 2 Score: 23.483 bits (49), Expect = 1.688e-14
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:  541 RKNVFYEIPYIMILEKKVSN 600
            +  V  E PY++I EKK+SN
Sbjct:  210 KMRVELEEPYVLIHEKKLSN 229          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH603_RHIL3 (60 kDa chaperonin 3 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=groL3 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.688e-14
Identity = 40/105 (38.10%), Postives = 62/105 (59.05%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G  +A+ A+V  L + A+ I++  +IA  GT +ANGD  IG  +A+A E+   + +  + + KT  + EL++  GM  DRGYLSPYF+TN         DP
Sbjct:  115 DLKRGIDLAVGAIVAELKANARKISNNSEIAQVGTISANGDAEIGRFLAEAMERVGNDGVITVEEAKTAET-ELEVVEGMQFDRGYLSPYFVTNADKMRVEFEDP 218          

HSP 2 Score: 25.409 bits (54), Expect = 1.688e-14
Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:  541 RKNVFYEIPYIMILEKKVSN 600
            +  V +E PYI+I EKK+SN
Sbjct:  210 KMRVEFEDPYILIHEKKLSN 229          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH60_CAUSK (60 kDa chaperonin OS=Caulobacter sp. (strain K31) GN=groL PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.981e-14
Identity = 42/106 (39.62%), Postives = 66/106 (62.26%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDPL 569
            D ++G   A+  +V ++ ++++ +T+  +IA  GT +ANGD+ +GE+IAKA +K     +  + + KT  + EL +  GM  DRGYLSPYFITN    E  L +PL
Sbjct:  115 DLKRGIDKAVHVVVDSIKASSKKVTTNNEIAQVGTISANGDKDVGEMIAKAMDKVGNEGVITVEEAKTAET-ELDVVEGMQFDRGYLSPYFITNADKMEVQLEEPL 219          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH603_RHILE (60 kDa chaperonin 3 OS=Rhizobium leguminosarum GN=groL3 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.981e-14
Identity = 44/105 (41.90%), Postives = 59/105 (56.19%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D R+G  + + A+V  + + A  + S  +IA  GT AANGD  IGE+IAKA +K  GN   +  +       EL +  GM  DRGYLSPYF+TN +     L DP
Sbjct:  115 DLRRGIDLGVTAVVKEIKARAMKVKSSSEIAQVGTIAANGDAAIGEMIAKAMDK-VGNEGVITVEEARTAETELDVVEGMQFDRGYLSPYFVTNAEKMRVELEDP 218          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH603_RHIEC (60 kDa chaperonin 3 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=groL3 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.587e-14
Identity = 43/105 (40.95%), Postives = 59/105 (56.19%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D R+G  + + A+V  + + A+ + S  +IA  G  AANGD  +GE+IAKA EK  GN   +  +       EL +  GM  DRGYLSPYF+TN +     L DP
Sbjct:  115 DLRRGIDLGVSAIVKEIQARARKVKSSGEIAQVGAIAANGDATVGEMIAKAMEK-VGNEGVITVEEARTAETELDVVEGMQFDRGYLSPYFVTNAEKMRVELEDP 218          
The following BLAST results are available for this feature:
BLAST of DY259883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 296
Match NameE-valueIdentityDescription
CH603_SINMW1.599e-1541.9060 kDa chaperonin 3 OS=Sinorhizobium medicae (stra... [more]
CH605_RHIME2.700e-1541.9060 kDa chaperonin 5 OS=Rhizobium meliloti GN=groL5... [more]
CH603_BRASB4.559e-1540.9560 kDa chaperonin 3 OS=Bradyrhizobium sp. (strain ... [more]
CH602_RHILE9.999e-1539.0560 kDa chaperonin 2 OS=Rhizobium leguminosarum GN=... [more]
CH60_CHRSD1.687e-1442.8660 kDa chaperonin OS=Chromohalobacter salexigens (... [more]
CH602_RHISN1.688e-1440.0060 kDa chaperonin 2 OS=Rhizobium sp. (strain NGR23... [more]
CH603_RHIL31.688e-1438.1060 kDa chaperonin 3 OS=Rhizobium leguminosarum bv.... [more]
CH60_CAUSK1.981e-1439.6260 kDa chaperonin OS=Caulobacter sp. (strain K31) ... [more]
CH603_RHILE1.981e-1441.9060 kDa chaperonin 3 OS=Rhizobium leguminosarum GN=... [more]
CH603_RHIEC2.587e-1440.9560 kDa chaperonin 3 OS=Rhizobium etli (strain CFN ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YI01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259883 ID=DY259883; Name=DY259883; organism=Citrus clementina; type=EST; length=929bp
TTCTGTGTCATGTTCATTTAACTCGGAGCAGACAGTATACCGCGGCGGAA
GTCACTAAAAGATTTTTGGATTGTGAAACATCTTCTGGATTTTCTTAATT
AAGAAATTAGATTTGCTGTGAATGGGAATGGAGTTAATTAATGGATACAG
ATCATCTGATCAAATTCAATTGACATCTATCTTCTGTCTGCAGGCACCAA
TTCTAAAGTTAAAAGGGAGAATTTTATATGCGGGAGGATGCGGAAGTGCC
AGACCAAAGACAAGGGGCTAGAATGGCAATTGATGCACTTGTGGGAAATT
TATACAGCACAGCACAACCCATCACATCATTCGAACAAATAGCCCTGTTT
GGAACGGCTGCAGCAAATGGTGACAGAGTGATTGGCGAGCTCATAGCCAA
GGCTTTTGAGAAAGGTTGGGGAAACAATCTTCATGTGTTAGCTGATCGGA
AAACACCACCCAGTATTGAACTTCAGTTGTATTGGGGAATGACCCTAGAC
AGGGGCTATTTGTCACCTTACTTCATCACCAATCATAAGACGAAAGAATG
TGTTTTACGAGATCCCTTATATCATGATCCTTGAGAAAAAGGTTTCAAAC
TGCGTTCTTCTTTGACTTATTGGCAGAGATTGAACCATTTAGAAAATATA
ATGGCACAAATGTACTGATCATTGCGAAAAAATTGAAAAATGACCTCCTA
ACAAGTCTGGTCCTAAATGGAAAGTCCTACAGACAACAAAGGGCTGGGTC
CAACAACCATCTGGAATTTGGAAAAACTACGAAGGCCAATCCTTTGGGAA
CATAGTCAAATTCCCTTAAGGGGACCGTCAGGGCCAGGAAACAATTTTTT
CACCGCCCCCCCCCGGCCCCCCCCTCCCAAAACCCCCGCCATCTCACACC
ACCGAACGTGTTCCTCCTTTTTGGTACGC
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