DY259883

Overview
NameDY259883
Unique NameDY259883
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length929
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH60_EUGGR (Chaperonin CPN60, mitochondrial OS=Euglena gracilis GN=HSP60 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.373e-13
Identity = 40/104 (38.46%), Postives = 65/104 (62.50%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRD 563
            D ++G   A++ ++ +L   ++ I S E++    T +ANGD  IG+LI  A EK     +  ++D KT  + EL++  GM+LDRGY+SPYF+TN KT++  + D
Sbjct:  128 DMKRGIDRAVEVVLQSLTEQSKTIVSKEEVTQVATISANGDVEIGQLIGHAMEKVGKAGVITVSDGKTLDT-ELEVVEGMSLDRGYISPYFVTNAKTQKVEIED 230          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH60_ELUMP (60 kDa chaperonin OS=Elusimicrobium minutum (strain Pei191) GN=groL PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.373e-13
Identity = 41/102 (40.20%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  258 RQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRD 563
            ++G  MA++ +   L    +P+ + E+ A   T +AN DR++GELIA+A EK     +  + + KT  + ELQ+  GM  DRGY+SPYF+T+ +  ECVL D
Sbjct:  116 KKGIEMAVETVKEELKKMQRPVETKEEKAQIATISAN-DRMVGELIAEAMEKVGHEGVITVEEGKTATT-ELQVVEGMQFDRGYISPYFVTDSERMECVLED 215          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH602_SINMW (60 kDa chaperonin 2 OS=Sinorhizobium medicae (strain WSM419) GN=groL2 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.373e-13
Identity = 41/104 (39.42%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRD 563
            D ++G  +A++A+V  L + A+ ++   +IA   T +ANGD  IG  +A+A EK     +  + + KT   IEL++  GM  DRGYLSPYFITN +     L D
Sbjct:  115 DLKRGIDLAVEAIVRELRTNARKVSKNAEIAQVATISANGDAEIGRYLAEAMEKVGNEGVITVEEAKTA-EIELEVVEGMQFDRGYLSPYFITNQEKMRVELED 217          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH602_RHIME (60 kDa chaperonin 2 OS=Rhizobium meliloti GN=groL2 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.373e-13
Identity = 41/104 (39.42%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRD 563
            D ++G  +A++A+V  L + A+ ++   +IA   T +ANGD  IG  +A+A EK     +  + + KT   IEL++  GM  DRGYLSPYFITN +     L D
Sbjct:  115 DLKRGIDLAVEAIVKELRNNARKVSKNAEIAQVATISANGDAEIGRYLAEAMEKVGNEGVITVEEAKTA-EIELEVVEGMEFDRGYLSPYFITNQEKMRVELED 217          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH602_BRAJA (60 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN=groL2 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 6.373e-13
Identity = 39/94 (41.49%), Postives = 59/94 (62.77%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITN 533
            D ++G  MA++A+V +L   ++ +TS E+IA  GT +ANGD  IG+ I+ A +K  GN   +  +       EL++  GM  DRGY+SPYF+TN
Sbjct:  115 DLKRGIDMAVEAVVADLVKNSKKVTSNEEIAQVGTISANGDAEIGKFISDAMKK-VGNEGVITVEEAKSLETELEVVEGMQFDRGYISPYFVTN 207          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH601_AZOC5 (60 kDa chaperonin 1 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=groL1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.373e-13
Identity = 42/105 (40.00%), Postives = 63/105 (60.00%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G  +A  A V ++ + A+ ++S  ++A  GT +ANGD  IGE+IA A +K     +  + + KT  + EL++  GM  DRGYLSPYFITN +     L DP
Sbjct:  115 DLKRGIDLATAAAVKDIQARAKKVSSSAEVAQVGTISANGDSSIGEMIAGAMQKVGNEGVITVEEAKTAET-ELEVVEGMQFDRGYLSPYFITNAEKMIADLEDP 218          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH60_CHLPB (60 kDa chaperonin OS=Chlorobium phaeobacteroides (strain BS1) GN=groL PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.569e-13
Identity = 43/111 (38.74%), Postives = 64/111 (57.66%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP--LYHD 578
            D ++G   A+  ++G L + +  I+   +IA  GT +AN D  IG+LIA A EK   + +  + + K   + EL++  GM  DRGYLSPYF+TN +  +  L DP  L HD
Sbjct:  115 DLKRGIDKAVKEVIGELRTISNDISGKIEIAQVGTISANNDPEIGQLIADAMEKVGKDGVITVEEAKGMDT-ELKVVEGMQFDRGYLSPYFVTNSEKMDAELEDPYILIHD 224          

HSP 2 Score: 23.0978 bits (48), Expect = 6.569e-13
Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  559 EIPYIMILEKKVSN 600
            E PYI+I +KK+SN
Sbjct:  216 EDPYILIHDKKISN 229          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH60_JANMA (60 kDa chaperonin OS=Janthinobacterium sp. (strain Marseille) GN=groL PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.570e-13
Identity = 44/118 (37.29%), Postives = 66/118 (55.93%), Query Frame = 3
Query:  213 KGEFYMREDAEVPDQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            +G  Y+       D ++G   A+ A V  L + A+P T+ ++IA  G+ +AN D  IGE IA+A EK     +  + D K+  + EL +  GM  DRGYLSPYFI N + +  +L +P
Sbjct:  102 EGMKYVAAGMNPMDLKRGIDKAVAATVEQLAAIAKPCTTTKEIAQVGSISANSDASIGERIAEAMEKVGKEGVITVEDGKS-LNDELDIVEGMQFDRGYLSPYFINNPEKQTAILENP 218          

HSP 2 Score: 22.3274 bits (46), Expect = 6.570e-13
Identity = 7/20 (35.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:  541 RKNVFYEIPYIMILEKKVSN 600
            ++    E P+I++ +KK+SN
Sbjct:  210 KQTAILENPFILLCDKKISN 229          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH607_BRAJA (60 kDa chaperonin 7 OS=Bradyrhizobium japonicum GN=groL7 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.323e-13
Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRD 563
            D ++G  +A+ A++ ++   A+P+ S  ++A  GT +ANGD  IG++IA+A +K  GN   +  +       E+ +  GM  DRGYLSPYF+TN +     L D
Sbjct:  115 DLKRGIDIAVAAVIKDIEKRAKPVASSSEVAQVGTISANGDAAIGKMIAQAMQK-VGNEGVITVEENKSLDTEVDIVEGMKFDRGYLSPYFVTNAEKMTAELED 217          
BLAST of DY259883 vs. ExPASy Swiss-Prot
Match: CH60_RICCK (60 kDa chaperonin OS=Rickettsia canadensis (strain McKiel) GN=groL PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.532e-13
Identity = 39/105 (37.14%), Postives = 64/105 (60.95%), Query Frame = 3
Query:  252 DQRQGARMAIDALVGNLYSTAQPITSFEQIALFGTAAANGDRVIGELIAKAFEKGWGNNLHVLADRKTPPSIELQLYWGMTLDRGYLSPYFITNHKTKECVLRDP 566
            D ++G  +A++ +V  +  +++ I S E+IA  GT ++NGD+ IGE IAKA E+     +  + + K   S ++++  GM  DRGYLSPYF+TN +     L +P
Sbjct:  115 DLKRGMDLAVNTVVEEIKKSSKKINSQEEIAQVGTISSNGDKEIGEKIAKAMEEVGKEGVITVEEAKN-FSFDVEVVKGMMFDRGYLSPYFVTNSEKMVAELENP 218          

HSP 2 Score: 22.3274 bits (46), Expect = 8.532e-13
Identity = 8/14 (57.14%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  559 EIPYIMILEKKVSN 600
            E P+I++ EKK+SN
Sbjct:  216 ENPFILLFEKKLSN 229          
The following BLAST results are available for this feature:
BLAST of DY259883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 296
Match NameE-valueIdentityDescription
CH60_EUGGR6.373e-1338.46Chaperonin CPN60, mitochondrial OS=Euglena gracili... [more]
CH60_ELUMP6.373e-1340.2060 kDa chaperonin OS=Elusimicrobium minutum (strai... [more]
CH602_SINMW6.373e-1339.4260 kDa chaperonin 2 OS=Sinorhizobium medicae (stra... [more]
CH602_RHIME6.373e-1339.4260 kDa chaperonin 2 OS=Rhizobium meliloti GN=groL2... [more]
CH602_BRAJA6.373e-1341.4960 kDa chaperonin 2 OS=Bradyrhizobium japonicum GN... [more]
CH601_AZOC56.373e-1340.0060 kDa chaperonin 1 OS=Azorhizobium caulinodans (s... [more]
CH60_CHLPB6.569e-1338.7460 kDa chaperonin OS=Chlorobium phaeobacteroides (... [more]
CH60_JANMA6.570e-1337.2960 kDa chaperonin OS=Janthinobacterium sp. (strain... [more]
CH607_BRAJA8.323e-1336.5460 kDa chaperonin 7 OS=Bradyrhizobium japonicum GN... [more]
CH60_RICCK8.532e-1337.1460 kDa chaperonin OS=Rickettsia canadensis (strain... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YI01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259883 ID=DY259883; Name=DY259883; organism=Citrus clementina; type=EST; length=929bp
TTCTGTGTCATGTTCATTTAACTCGGAGCAGACAGTATACCGCGGCGGAA
GTCACTAAAAGATTTTTGGATTGTGAAACATCTTCTGGATTTTCTTAATT
AAGAAATTAGATTTGCTGTGAATGGGAATGGAGTTAATTAATGGATACAG
ATCATCTGATCAAATTCAATTGACATCTATCTTCTGTCTGCAGGCACCAA
TTCTAAAGTTAAAAGGGAGAATTTTATATGCGGGAGGATGCGGAAGTGCC
AGACCAAAGACAAGGGGCTAGAATGGCAATTGATGCACTTGTGGGAAATT
TATACAGCACAGCACAACCCATCACATCATTCGAACAAATAGCCCTGTTT
GGAACGGCTGCAGCAAATGGTGACAGAGTGATTGGCGAGCTCATAGCCAA
GGCTTTTGAGAAAGGTTGGGGAAACAATCTTCATGTGTTAGCTGATCGGA
AAACACCACCCAGTATTGAACTTCAGTTGTATTGGGGAATGACCCTAGAC
AGGGGCTATTTGTCACCTTACTTCATCACCAATCATAAGACGAAAGAATG
TGTTTTACGAGATCCCTTATATCATGATCCTTGAGAAAAAGGTTTCAAAC
TGCGTTCTTCTTTGACTTATTGGCAGAGATTGAACCATTTAGAAAATATA
ATGGCACAAATGTACTGATCATTGCGAAAAAATTGAAAAATGACCTCCTA
ACAAGTCTGGTCCTAAATGGAAAGTCCTACAGACAACAAAGGGCTGGGTC
CAACAACCATCTGGAATTTGGAAAAACTACGAAGGCCAATCCTTTGGGAA
CATAGTCAAATTCCCTTAAGGGGACCGTCAGGGCCAGGAAACAATTTTTT
CACCGCCCCCCCCCGGCCCCCCCCTCCCAAAACCCCCGCCATCTCACACC
ACCGAACGTGTTCCTCCTTTTTGGTACGC
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