DY259888

Overview
NameDY259888
Unique NameDY259888
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1071
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259888 vs. ExPASy Swiss-Prot
Match: ERG24_ASCIM (Delta(14)-sterol reductase OS=Ascobolus immersus GN=ERG3 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.866e-13
Identity = 50/174 (28.74%), Postives = 81/174 (46.55%), Query Frame = 3
Query:  300 IACFGAFEAALQLLLPGKRVEGPISPTGHRPVYKANGVAAYAVTLITYLSL--------WWFGIFNPTIVYDHLGEIYSALIFGSFIFCIFLYIKGHLAPSS------TDSGSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVPYCIKQYEANAKVEDSMLV 779
            +A +     AL  +LP +  EG +   G R  Y+ N    + V   T+L          WWF  +    + D+  ++ SA I  S+   +++YI+ +           +  G  GN I DF+ G EL PRIG+  DIK     R G+M W +  + + +KQY  +  V DS+++
Sbjct:   69 VAAYYLLLVALMYVLPAEIAEGVVLKDGSRLKYRCNAFTTFLV-FFTFLGTMTVLEGPTWWFWSY----LTDNFAQLQSASIVFSYAMSLWVYIRSYRPMPKGKEVILSPVGFKGNHIHDFWMGRELNPRIGEWLDIKQLHELRPGLMGWILFNLAWTVKQYNTHGFVSDSIVL 237          
BLAST of DY259888 vs. ExPASy Swiss-Prot
Match: ERG24_NEUCR (Delta(14)-sterol reductase OS=Neurospora crassa GN=erg-3 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.342e-12
Identity = 66/205 (32.20%), Postives = 89/205 (43.41%), Query Frame = 3
Query:  240 NGLQGFIDIWPRPTAVAWKLIACFGAFEAALQLLLPGKRVEGPISPTGHRPVYKANGVAAYAVTLI-----TYLSLWWFGIFNPTIVYDHLGEIYSALIFGSFIFCIFLYIKGH-LAPSSTD------SGSCGNIIIDFYWGMELYPRIGK----NFDIKVFTNCRFGMMSWAVLAVPYCIKQYEANAKVEDSMLVNTKLMRNYV 806
            NG+ G    W   +A  W L   + A        LPG  VEG    TG R  YK N   +   TL      T      F ++  T + D+  +I SA I  +F   IF+Y++   + P + D       G  G++I DFY G EL PRI        DIK F   R G++ W +L   +  KQY     V DS+L  T +   YV
Sbjct:   78 NGVFGLFS-W---SATLWTL--GYYALSLVQYRFLPGHHVEGTELSTGGRLKYKLNAFNSAMCTLAILAAGTIAQGAEFPVW--TFISDNFAQIISANILFAFALAIFVYVRSFDVKPGNKDMRQLAAGGVTGSLIYDFYIGRELNPRITLPLIGQVDIKEFMEMRPGLLGWIILNCAFIAKQYRLYGYVTDSILFITAIQAFYV 274          
BLAST of DY259888 vs. ExPASy Swiss-Prot
Match: ERG24_SCHPO (Delta(14)-sterol reductase OS=Schizosaccharomyces pombe GN=erg24 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.659e-12
Identity = 46/148 (31.08%), Postives = 73/148 (49.32%), Query Frame = 3
Query:  348 GKRVEG-PISPTGHRPVYKANGVAAYAVTL-ITYLSLWWFGIFNPTIVYDHLGEIYSALIFGSFIFCIFLYIKGHLAPSS-TDSGSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVPYCIKQY-EANAKVEDSMLV 779
            GK  +G PI   G R +YK NG  +  + L +   S++  G      ++D+  ++  A    S + C F Y++           G+ GNI+ D++ G  L PRIG NFDIK F   R G++ W V  + +   QY     ++ DSM++
Sbjct:   85 GKWAKGTPIDDKGTRLLYKINGFNSACLILGVVCTSIYLLGASCMEFIWDNFLQLMFAAYVFSVVLCTFCYVQSFFGKQQLAKGGTSGNILFDWFIGRSLNPRIG-NFDIKCFCELRPGLILWVVFDIAFACHQYLVLGGRITDSMVL 231          
BLAST of DY259888 vs. ExPASy Swiss-Prot
Match: LBR_RAT (Lamin-B receptor OS=Rattus norvegicus GN=Lbr PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.637e-11
Identity = 49/177 (27.68%), Postives = 82/177 (46.33%), Query Frame = 3
Query:  321 EAALQLLLPGKRVEGPISPTGHRPVYKANGVAAYAVT--LITYLSLWWFGIFNPTIVYDHLGEIYSALIFGSFIFCIFLYIKGHLAPSSTDS-GSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVPYCIKQYEANAKVEDSMLVNTKLMRNYVTKFFLGGNWFRD 842
            +A   LL  GK VEG     G R  Y+ NG+ A+ +T   +     W   ++    +Y H  +   A I  S +  ++LY +    P    S  S GN + DF+ G EL PRIG  FD+K F   R G++ W V+ +   + + +   +   S+ +   L+ ++   + +   WF +
Sbjct:  274 QALFSLLPVGKVVEGTPLVDGRRLKYRLNGLYAFILTSAAVGTAVFWDIELY---YLYTHFLQFALAAIVFSVVLSVYLYARSLKVPRDELSPASSGNAVYDFFIGRELNPRIGA-FDLKFFCELRPGLIGWVVINLVMLLAEMKVQERSAPSLAMT--LVNSFQLLYVVDALWFEE 444          
BLAST of DY259888 vs. ExPASy Swiss-Prot
Match: LBR_CHICK (Lamin-B receptor OS=Gallus gallus GN=LBR PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.637e-11
Identity = 46/135 (34.07%), Postives = 67/135 (49.63%), Query Frame = 3
Query:  318 FEAALQLLLPGKRVEGPISPTGHRPVYKANGVAAYAVTLITYLSLWWFGIFNPTIVYDHLGEIYSALIFGSFIFCIFLYIKGHLAPSS--TDSGSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVL 716
            F+A   LL  GK VEG       +  Y+ NG  A+ +T     +L +F  F    +YDH  +   +    S    I+LYI+   AP       G+ G ++ DF+ G EL PRIG +FD+K F   R G++ W V+
Sbjct:  260 FQALFYLLPIGKVVEGLPLSNPRKLQYRINGFYAFLLTAAAIGTLLYFQ-FELHYLYDHFVQFAVSAAAFSMALSIYLYIRSLKAPEEDLAPGGNSGYLVYDFFTGHELNPRIG-SFDLKYFCELRPGLIGWVVI 392          
BLAST of DY259888 vs. ExPASy Swiss-Prot
Match: ERG24_BOVIN (Delta(14)-sterol reductase OS=Bos taurus GN=TM7SF2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.615e-11
Identity = 58/173 (33.53%), Postives = 82/173 (47.40%), Query Frame = 3
Query:  291 WKLIACFG--AFEAALQLLLPGKRVEGPISPTGHRPVYKANGVAAYAVTLITYLSLWWFGIFNPTIVYDHLGEIYSALIFGS----FIFCIFLYIKGHLAPSST--DSGSCGNIIIDFYWGMELYPRIGKNFDIKVFTNCRFGMMSWAVLAVPYCIKQYEANAKVEDSM-LVN 782
            W L+ C      +AAL LL   K  EG       R  Y  NG  A  +T +    L   G+ +  +    L E+   L F +    FIF + LY+K  LAP+S     G+ GN+I DF+ G EL PRI  +FD K F   R G++ W ++ +   I++ E       +M LVN
Sbjct:   61 WALLLCLTWLGLQAALYLLPARKVAEGQELKDKSRLRYPTNGFQALVLTAL----LVGLGV-SAGLPLSALPEMLLPLAFAATLTAFIFSLLLYLKALLAPASALAPGGNSGNLIYDFFLGRELNPRI-CSFDFKYFCELRPGLIGWVLINLALLIQEAELRGSPSLAMWLVN 227          
The following BLAST results are available for this feature:
BLAST of DY259888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ERG24_ASCIM7.866e-1328.74Delta(14)-sterol reductase OS=Ascobolus immersus G... [more]
ERG24_NEUCR1.342e-1232.20Delta(14)-sterol reductase OS=Neurospora crassa GN... [more]
ERG24_SCHPO6.659e-1231.08Delta(14)-sterol reductase OS=Schizosaccharomyces ... [more]
LBR_RAT5.637e-1127.68Lamin-B receptor OS=Rattus norvegicus GN=Lbr PE=1 ... [more]
LBR_CHICK5.637e-1134.07Lamin-B receptor OS=Gallus gallus GN=LBR PE=2 SV=1[more]
ERG24_BOVIN9.615e-1133.53Delta(14)-sterol reductase OS=Bos taurus GN=TM7SF2... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YI12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259888 ID=DY259888; Name=DY259888; organism=Citrus clementina; type=EST; length=1071bp
GAGTCAATATATATCAGTTCACAGTCGTGAGGATTTCATAAACAGACTTT
GTGAAGAAGAAATCAAGAAACAAGAAAATGGCAGCAGCCACAGAATCAAA
GACTGTTCATTCAGCAGCAGTCACCTATGTTTCCATGATTTCACTCCTCA
CTCTCTGCCCTCCTTTTGTCATTTTGCTATGGTATACAATGGTACATGCT
GATGGGTCTGTTATCAAATCATGGGACTACTTGCGGCAAAATGGGCTGCA
GGGGTTTATAGATATATGGCCAAGACCTACTGCTGTTGCTTGGAAATTAA
TTGCTTGTTTCGGAGCATTTGAGGCTGCACTTCAGCTTCTTCTTCCTGGC
AAAAGGGTTGAGGGTCCGATTTCTCCTACTGGGCATCGCCCAGTTTACAA
GGCAAATGGTGTGGCCGCATATGCAGTTACGTTAATTACCTATCTAAGCC
TTTGGTGGTTTGGAATATTCAACCCCACCATTGTTTATGATCATCTGGGA
GAAATATATTCGGCACTTATTTTTGGAAGCTTCATCTTTTGTATTTTCTT
ATATATTAAAGGTCACTTGGCCCCATCTTCCACTGATTCTGGTTCATGTG
GAAACATAATAATTGACTTCTACTGGGGTATGGAGCTGTATCCTCGAATT
GGCAAGAACTTTGACATCAAAGTATTCACAAACTGCAGATTTGGGATGAT
GTCTTGGGCTGTTCTCGCTGTCCCTTATTGTATTAAGCAGTATGAAGCAA
ATGCCAAAGTCGAAGATTCCATGCTTGTAAATACTAAATTGATGCGGAAT
TATGTTACAAAATTCTTCCTGGGGGGAAACTGGTTCCGGGACCCCAATGA
ACATTTGGCTCATGATCGAGCTGGGGTTTAATATTTTGTTGGGGGATGCT
TGGGTAGGGGTTCCTTTCCGGGTATACATCCCCCGGGGCATGACCCTGAT
TAACCCTCCCGGGGGCTCCTGGGGACCCCCCGCTTTGCCCTTTTTTTTTT
CTAGGCGGCAGGGATTTTTTTTGGATAAAACTTTTAATTAAAATATGTCC
GAACAAGGAAAAAGGAAAAAA
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