DY259908

Overview
NameDY259908
Unique NameDY259908
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1090
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY259908 vs. ExPASy Swiss-Prot
Match: NAMA_BACWK (NADPH dehydrogenase OS=Bacillus weihenstephanensis (strain KBAB4) GN=namA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.402e-11
Identity = 53/188 (28.19%), Postives = 86/188 (45.74%), Query Frame = 1 
Query:  103 RLFTPYNMGKFNLSHRVVLAPMTRCRALNG---IPGPALATYYQQRSTPGGFLISEGTAVSPTAPGFPHVPGIYTEEQVEAWKKVVDAVHAKGAIIFCQLWHVGRASHQVYQPGGAAPISSTNEPISRRWRILMPDGSYATYPNPQALQTSEIPEVIDQYRQAALNAIPAGFDGIEIPGAHGYLIDQF 657
            +LF+PY +    L +R++++PM    + N    +    L  Y  + +   G ++ E TAV P         GI+ +  +E   K    +H  GA    QL H GR +    +    AP +    P + R +I            P  +   +I E +  +++AAL +  AG D IE+ GAHGYLI++F
Sbjct:    4 QLFSPYTIKDVTLKNRIIMSPMCMYSSENEDGQVTNFHLVHYGTRAAGQVGLVMIEATAVLPEGRISNKDLGIWDDNLIEGLHKTTTFIHNNGAKAAIQLAHAGRKAE--LETDAFAPSAI---PFNDRMKI------------PVEMNKQQIKETVSAFQKAALRSKRAGVDVIELHGAHGYLINEF 174
The following BLAST results are available for this feature:
BLAST of DY259908 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
NAMA_BACWK3.402e-1128.19NADPH dehydrogenase OS=Bacillus weihenstephanensis... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YJ10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259908 ID=DY259908; Name=DY259908; organism=Citrus clementina; type=EST; length=1090bp
CAATAGATCATCGTCCTCAGAAAACTCCGAAGCATCAGATCATCTTTTAA
TTTCTATTTTTCTTCAGGAATAGAAATGGCAGAAACTACAGCGAATGACA
GCAGGCTCTTTACTCCATACAATATGGGCAAGTTCAACCTCTCTCACAGG
GTGGTGCTTGCGCCGATGACAAGATGCAGAGCTTTGAATGGGATTCCAGG
GCCAGCTTTGGCTACTTACTATCAGCAGAGGTCAACGCCTGGCGGCTTTC
TCATCTCTGAAGGCACTGCGGTCTCTCCTACGGCTCCCGGTTTTCCACAT
GTCCCAGGAATTTACACAGAGGAACAAGTAGAGGCGTGGAAGAAGGTGGT
AGATGCGGTTCATGCTAAGGGGGCCATCATTTTCTGTCAACTCTGGCATG
TTGGCCGTGCTTCTCATCAAGTTTATCAACCTGGTGGAGCTGCTCCAATA
TCATCAACGAACGAGCCCATTTCAAGGAGGTGGAGAATTCTTATGCCAGA
TGGGTCTTATGCCACATACCCCAACCCGCAAGCCTTGCAAACCTCTGAAA
TACCTGAGGTGATAGACCAATACCGCCAGGCAGCACTCAATGCTATTCCA
GCAGGTTTTGATGGAATTGAAATCCCTGGAGCCCATGGCTATCTAATTGA
CCAATTTTGGAAGATGGGAATCATGACCGAACAGATGGATTAGGTGGGAC
AATTGAAAATCATTGGAAATTCTAATGGATTGGGTCCAAAAATTATTGGA
ACTTATGGGGGGCAACCAGGTGGCCGGGAAAAGGCCCCCGGCAATGGACC
CCCTGGAGGCCAAAAACCCGAATCCCCCGGGGTCAGGGTTGGGGGGTTAT
CGAGGGATTTAACAGGCCCCGAAAAAAGCGGGGGGGCAACTCCCTTTTTT
GTGGGGGAACCCCCCCCCAAAACCCGCTTTAGGGCGCAAAAAAATCCGGG
GAACCCGGGCCGAAAAAAAAAAAACCCCCCCCTTTTGGGGACTTGGAAAA
AGGGTCTACAGAGGGAATTTTTTTTTTTGATGGGGGGCGCCTCCTCCCGG
GAGGGCAGGAGGCCCCCCCCTTGGGGAGAGAAAAGGGGGG
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