DY259927

Overview
NameDY259927
Unique NameDY259927
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1063
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_MOUSE (40S ribosomal protein S16 OS=Mus musculus GN=Rps16 PE=2 SV=4)

HSP 1 Score: 171.785 bits (434), Expect = 2.667e-42
Identity = 80/113 (70.80%), Postives = 97/113 (85.84%), Query Frame = 3 
Query:   60 ESVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            +SVQ FGR  TA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RF GVD+R+RVKGGGH + IYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLL
Sbjct:    8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLL 120

HSP 2 Score: 22.3274 bits (46), Expect = 2.667e-42
Identity = 11/24 (45.83%), Postives = 11/24 (45.83%), Query Frame = 1 
Query:  400 VADPRRCEPXXXXXXXXXXXXQKS 471
            VADPRRCE             QKS
Sbjct:  121 VADPRRCESKKFGGPGARARYQKS 144
[Close]
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_HUMAN (40S ribosomal protein S16 OS=Homo sapiens GN=RPS16 PE=1 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 2.667e-42
Identity = 80/113 (70.80%), Postives = 97/113 (85.84%), Query Frame = 3 
Query:   60 ESVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            +SVQ FGR  TA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RF GVD+R+RVKGGGH + IYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLL
Sbjct:    8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLL 120

HSP 2 Score: 22.3274 bits (46), Expect = 2.667e-42
Identity = 11/24 (45.83%), Postives = 11/24 (45.83%), Query Frame = 1 
Query:  400 VADPRRCEPXXXXXXXXXXXXQKS 471
            VADPRRCE             QKS
Sbjct:  121 VADPRRCESKKFGGPGARARYQKS 144
[Close]
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_BOVIN (40S ribosomal protein S16 OS=Bos taurus GN=RPS16 PE=2 SV=3)

HSP 1 Score: 171.785 bits (434), Expect = 2.667e-42
Identity = 80/113 (70.80%), Postives = 97/113 (85.84%), Query Frame = 3 
Query:   60 ESVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            +SVQ FGR  TA AV +CKRG GLIK+NG P+E++EP  L++K  EP+LLLG+ RF GVD+R+RVKGGGH + IYAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLL
Sbjct:    8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLL 120

HSP 2 Score: 22.3274 bits (46), Expect = 2.667e-42
Identity = 11/24 (45.83%), Postives = 11/24 (45.83%), Query Frame = 1 
Query:  400 VADPRRCEPXXXXXXXXXXXXQKS 471
            VADPRRCE             QKS
Sbjct:  121 VADPRRCESKKFGGPGARARYQKS 144
[Close]
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_LUPPO (40S ribosomal protein S16 OS=Lupinus polyphyllus GN=RPS16 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.669e-42
Identity = 86/91 (94.51%), Postives = 87/91 (95.60%), Query Frame = 3 
Query:  126 GLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            GLIKING PIELVEPEILRFKAFEPILLLG+ RF GVDMRIRVKGGGHTS IYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL
Sbjct:   29 GLIKINGSPIELVEPEILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 119

HSP 2 Score: 25.409 bits (54), Expect = 2.669e-42
Identity = 12/24 (50.00%), Postives = 12/24 (50.00%), Query Frame = 1 
Query:  400 VADPRRCEPXXXXXXXXXXXXQKS 471
            VADPRRCEP            QKS
Sbjct:  120 VADPRRCEPKKFGGRGARARFQKS 143
[Close]
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_DROME (40S ribosomal protein S16 OS=Drosophila melanogaster GN=RpS16 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.475e-42
Identity = 79/115 (68.70%), Postives = 98/115 (85.22%), Query Frame = 3 
Query:   60 ESVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLCG 404
            ++VQ FGR  TA AV YCKRG GL+K+NG P+E +EP++L++K  EP+LLLG+ +F GVD+R+RV GGGH + IYAIRQ+I+KALVAFYQKYVDE SKKEIKDILV+YDRTLL G
Sbjct:   10 QAVQVFGRKKTATAVAYCKRGNGLLKVNGRPLEQIEPKVLQYKLQEPLLLLGKEKFAGVDIRVRVSGGGHVAQIYAIRQAISKALVAFYQKYVDEASKKEIKDILVQYDRTLLVG 124

HSP 2 Score: 23.8682 bits (50), Expect = 3.475e-42
Identity = 11/24 (45.83%), Postives = 11/24 (45.83%), Query Frame = 1 
Query:  400 VADPRRCEPXXXXXXXXXXXXQKS 471
            V DPRRCEP            QKS
Sbjct:  123 VGDPRRCEPKKFGGPGARARYQKS 146
[Close]
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_ICTPU (40S ribosomal protein S16 OS=Ictalurus punctatus GN=rps16 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.002e-41
Identity = 79/113 (69.91%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:   60 ESVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            +SVQ FGR  TA AV +CKRG GLIK+NG P+E +EP  L++K  EP+LLLG+ RF GVD+R+RVKGGGH + +YAIRQSI+KALVA+YQKYVDE SKKEIKDIL++YDRTLL
Sbjct:    8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQVYAIRQSISKALVAYYQKYVDEASKKEIKDILIQYDRTLL 120

HSP 2 Score: 22.3274 bits (46), Expect = 1.002e-41
Identity = 11/24 (45.83%), Postives = 11/24 (45.83%), Query Frame = 1 
Query:  400 VADPRRCEPXXXXXXXXXXXXQKS 471
            VADPRRCE             QKS
Sbjct:  121 VADPRRCESKKFGGPGARARYQKS 144
[Close]
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_SPOFR (40S ribosomal protein S16 OS=Spodoptera frugiperda GN=RpS16 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.215e-41
Identity = 75/113 (66.37%), Postives = 98/113 (86.73%), Query Frame = 3 
Query:   60 ESVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            ++VQ FGR  TA AV YCKRG G++++NG P++LVEP +L++K  EPILLLG+ +F+GVD+R+ VKGGGH + +YAIRQ+I+KAL+AFYQKYVDE SKKEIKDILV+YDR+LL
Sbjct:   13 QAVQVFGRKKTATAVAYCKRGHGVLRVNGRPLDLVEPRLLQYKLQEPILLLGKEKFSGVDIRVTVKGGGHVAQVYAIRQAISKALIAFYQKYVDEASKKEIKDILVQYDRSLL 125

HSP 2 Score: 25.409 bits (54), Expect = 2.215e-41
Identity = 12/24 (50.00%), Postives = 12/24 (50.00%), Query Frame = 1 
Query:  400 VADPRRCEPXXXXXXXXXXXXQKS 471
            VADPRRCEP            QKS
Sbjct:  126 VADPRRCEPKKFGGPGARARYQKS 149
[Close]
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_HETFO (40S ribosomal protein S16 OS=Heteropneustes fossilis GN=rps16 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.217e-41
Identity = 78/113 (69.03%), Postives = 96/113 (84.96%), Query Frame = 3 
Query:   60 ESVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            +SVQ FGR  TA AV +CKRG GLIK+NG P+E +EP  L++K  EP+LLLG+ RF GVD+R+RVKGGGH + +YAIRQ+I+KALVA+YQKYVDE SKKEIKDIL++YDRTLL
Sbjct:    8 QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLETIEPATLQYKLLEPVLLLGKERFAGVDIRVRVKGGGHVAQVYAIRQAISKALVAYYQKYVDEASKKEIKDILIQYDRTLL 120

HSP 2 Score: 22.3274 bits (46), Expect = 2.217e-41
Identity = 11/24 (45.83%), Postives = 11/24 (45.83%), Query Frame = 1 
Query:  400 VADPRRCEPXXXXXXXXXXXXQKS 471
            VADPRRCE             QKS
Sbjct:  121 VADPRRCESKKFGGPGARARYQKS 144
[Close]
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_AEDAE (40S ribosomal protein S16 OS=Aedes aegypti GN=RpS16 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.075e-40
Identity = 73/112 (65.18%), Postives = 96/112 (85.71%), Query Frame = 3 
Query:   63 SVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            +VQ FGR  TA AV YCKRG+GL+++NG P++ +EP++L++K  EP+LLLG+ +F GVD+RIRV GGGH + IYAIRQ+I+KALV+FYQKYVDE S+KE+KDIL +YDRTLL
Sbjct:   11 AVQVFGRKKTATAVAYCKRGKGLLRVNGRPLDQIEPKVLQYKLQEPLLLLGKEKFAGVDIRIRVSGGGHVAQIYAIRQAISKALVSFYQKYVDEASRKELKDILTQYDRTLL 122

HSP 2 Score: 25.409 bits (54), Expect = 4.075e-40
Identity = 12/24 (50.00%), Postives = 12/24 (50.00%), Query Frame = 1 
Query:  400 VADPRRCEPXXXXXXXXXXXXQKS 471
            VADPRRCEP            QKS
Sbjct:  123 VADPRRCEPKKFGGPGARARYQKS 146
[Close]
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_SCHPO (40S ribosomal protein S16 OS=Schizosaccharomyces pombe GN=rps16a PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.377e-37
Identity = 72/113 (63.72%), Postives = 91/113 (80.53%), Query Frame = 3 
Query:   60 ESVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            +SVQCFG+   A AV +CK G+GLIK+NG P+ LV+PEILR K +EPIL+ G  +F GVD+R+RV GGGH S IYAIRQ+I+KA+VA+YQK+VDE SK E+K  L+ YDRTLL
Sbjct:    2 QSVQCFGKKGNATAVAHCKVGKGLIKVNGAPLSLVQPEILRMKVYEPILVAGADKFAGVDIRVRVSGGGHVSQIYAIRQAISKAIVAYYQKFVDEHSKAELKKALITYDRTLL 114

HSP 2 Score: 21.557 bits (44), Expect = 1.377e-37
Identity = 11/24 (45.83%), Postives = 11/24 (45.83%), Query Frame = 1 
Query:  400 VADPRRCEPXXXXXXXXXXXXQKS 471
            VADPRR EP            QKS
Sbjct:  115 VADPRRMEPKKFGGHGARARQQKS 138
The following BLAST results are available for this feature:
BLAST of DY259927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
RS16_MOUSE2.667e-4270.8040S ribosomal protein S16 OS=Mus musculus GN=Rps16... [more]
RS16_HUMAN2.667e-4270.8040S ribosomal protein S16 OS=Homo sapiens GN=RPS16... [more]
RS16_BOVIN2.667e-4270.8040S ribosomal protein S16 OS=Bos taurus GN=RPS16 P... [more]
RS16_LUPPO2.669e-4294.5140S ribosomal protein S16 OS=Lupinus polyphyllus G... [more]
RS16_DROME3.475e-4268.7040S ribosomal protein S16 OS=Drosophila melanogast... [more]
RS16_ICTPU1.002e-4169.9140S ribosomal protein S16 OS=Ictalurus punctatus G... [more]
RS16_SPOFR2.215e-4166.3740S ribosomal protein S16 OS=Spodoptera frugiperda... [more]
RS16_HETFO2.217e-4169.0340S ribosomal protein S16 OS=Heteropneustes fossil... [more]
RS16_AEDAE4.075e-4065.1840S ribosomal protein S16 OS=Aedes aegypti GN=RpS1... [more]
RS16_SCHPO1.377e-3763.7240S ribosomal protein S16 OS=Schizosaccharomyces p... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YK17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259927 ID=DY259927; Name=DY259927; organism=Citrus clementina; type=EST; length=1063bp
CACAACACAAACTTTCACTAAGCACTGATCCCAACATGGCTACTGCTGCT
CCTAAAACCGAGTCCGTGCAATGCTTCGGCCGCAATATGACGGCGGTGGC
AGTAACCTACTGCAAGCGCGGCCGCGGCTTGATCAAGATCAACGGCTGCC
CAATCGAGCTTGTGGAGCCAGAGATCCTGCGTTTCAAGGCCTTCGAGCCG
ATCCTATTGCTCGGACGACACCGTTTCAACGGAGTAGACATGAGGATCCG
CGTCAAGGGCGGAGGCCACACGTCTCATATCTACGCTATACGCCAGAGCA
TCGCGAAGGCCTTGGTCGCGTTTTATCAGAAGTACGTGGACGAACAGAGC
AAGAAGGAGATAAAAGACATTCTGGTTAGGTACGATAGGACTTTGCTTTG
TGGCTGATCCTAGACGCTGTGAGCCTAAGAAGTTCGGAGGAGGCGGCGCC
AGGGGTAGGTTCCAGAAATCATAACCGTAAAGAAACAGAAGTTTAGGTTG
GCCTTTTTATTATTGATAATAATTTTGGGTTTTCATCGAACCGATACATT
AAATCGTTCCTTTAACCCAACCTAAATATTGAAAAGGCTAAAACTAATAG
TAAAATGAGAAAATTTAGGTTCAGAAAGAGATCAAAAAGATATTAGATTC
TGCTAACTCAAAATAGGATGTTAAATTAGATCGATAAAGGATATAACAGA
TTTTATACCATGATTATCAAGACAGGATCATAAAGAAAGGTAAAATCTAA
AATACTATCACAAGCACAGGATTACTGATCACCATCTCAAGTCTGCATCC
ATCATTAATCAAACTTACAGAAACCATTTCTAAAAAATAGTGTATCTAAG
ACCAAAGTATGAAAACAGAAAACGTGGAGACAAAAAATCAATATTAGCAG
ATATAACTACTCGTCAACGGTGAGACCCTCAAATAAATAGCATCCTATCA
AACGCACAAATCCAGTCAAATCCTAAATCAAATATATCTGAAACTATTCC
TTATCCGCTGACCCCTACCCTCCCCGTCACACGCTCTATCCTCACCATCC
CCTAACCGCGACT
back to top