DY259927

Overview
NameDY259927
Unique NameDY259927
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1063
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_CAEEL (40S ribosomal protein S16 OS=Caenorhabditis elegans GN=rps-16 PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 4.522e-37
Identity = 71/113 (62.83%), Postives = 93/113 (82.30%), Query Frame = 3
Query:   60 ESVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            +SVQ FGR  TA AV +CK+G+GLIK+NG P+E +EP+ILR K  EP+LL+G+ RF  VD+RIRV GGGH + IYA+RQ++AKALVA+Y KYVDEQSK+E+K+I   YD++LL
Sbjct:    6 QSVQTFGRKKTATAVAHCKKGQGLIKVNGRPLEFLEPQILRIKLQEPLLLVGKERFQDVDIRIRVSGGGHVAQIYAVRQALAKALVAYYHKYVDEQSKRELKNIFAAYDKSLL 118          
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_CANAL (40S ribosomal protein S16 OS=Candida albicans GN=RPS16 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 3.828e-36
Identity = 71/114 (62.28%), Postives = 90/114 (78.95%), Query Frame = 3
Query:   57 TESVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            T+SVQ FG+  TA AV + K G+GLIKING PI LV+PEILRFK +EP+ L+G  +F G+D+R++V GGGH S +YAIRQ+IAK LVA++QKYVDE SK E+K I   YD+TLL
Sbjct:    3 TQSVQTFGKKKTATAVAHVKAGKGLIKINGSPITLVQPEILRFKVYEPLTLVGLDKFQGIDIRVKVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEASKNELKKIFASYDKTLL 116          
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_YEAST (40S ribosomal protein S16 OS=Saccharomyces cerevisiae GN=RPS16A PE=1 SV=2)

HSP 1 Score: 151.754 bits (382), Expect = 6.529e-36
Identity = 71/112 (63.39%), Postives = 89/112 (79.46%), Query Frame = 3
Query:   63 SVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            SVQ FG+  +A AV + K G+GLIK+NG PI LVEPEILRFK +EP+LL+G  +F+ +D+R+RV GGGH S +YAIRQ+IAK LVA++QKYVDEQSK E+K     YDRTLL
Sbjct:    6 SVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFSNIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKYVDEQSKNELKKAFTSYDRTLL 117          
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_CANGA (40S ribosomal protein S16 OS=Candida glabrata GN=RPS16 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 4.232e-35
Identity = 70/112 (62.50%), Postives = 88/112 (78.57%), Query Frame = 3
Query:   63 SVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            SVQ FG+  +A AV + K G+GLIK+NG PI LVEPEILRFK +EP+LL+G  +F  +D+R+RV GGGH S +YAIRQ+IAK LVA++QK+VDEQSK E+K     YDRTLL
Sbjct:    6 SVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVEPEILRFKVYEPLLLVGLDKFANIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKFVDEQSKNELKKAFTSYDRTLL 117          
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_SACEX (40S ribosomal protein S16 OS=Saccharomyces exiguus GN=RPS16 PE=3 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 9.428e-35
Identity = 68/112 (60.71%), Postives = 88/112 (78.57%), Query Frame = 3
Query:   63 SVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            SVQ FG+  +A AV + K G+GLIK+NG PI LV+PEILRFK +EP+LL+G  +F  +D+R+RV GGGH S +YAIRQ+IAK L+A++QK+VDEQSK E+K     YDRTLL
Sbjct:    6 SVQTFGKKKSATAVAHVKAGKGLIKVNGAPITLVQPEILRFKVYEPLLLVGLDKFTNIDIRVRVTGGGHVSQVYAIRQAIAKGLIAYHQKFVDEQSKNELKRAFTLYDRTLL 117          
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_ASHGO (40S ribosomal protein S16 OS=Ashbya gossypii GN=RPS16 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 9.428e-35
Identity = 69/112 (61.61%), Postives = 88/112 (78.57%), Query Frame = 3
Query:   63 SVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            SVQ FG+  +A AV + K G+GLIK+NG PI LV+PEILRFK +EP+LL+G  +F  +D+R+RV GGGH S +YAIRQ+IAK LVA++QK+VDEQSK E+K     YDRTLL
Sbjct:    6 SVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVQPEILRFKVYEPLLLVGLDKFANIDIRVRVTGGGHVSQVYAIRQAIAKGLVAYHQKFVDEQSKNELKKAFTSYDRTLL 117          
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_DEBHA (40S ribosomal protein S16 OS=Debaryomyces hansenii GN=RPS16 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.231e-34
Identity = 67/114 (58.77%), Postives = 88/114 (77.19%), Query Frame = 3
Query:   57 TESVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            T SVQ FG+  TA AV + K G+GLIK+NG PI LV+PEILRFK +EP+ L+G  +F  +D+R++V GGGH S +YAIRQ+IAK LVA++QK+VDE SK E+K +   YD+TLL
Sbjct:    3 TPSVQTFGKKKTATAVAHVKAGKGLIKVNGAPITLVQPEILRFKVYEPLTLVGLDKFQNIDIRVKVSGGGHVSQVYAIRQAIAKGLVAYHQKFVDEASKNELKKVFASYDKTLL 116          
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_NEUCR (40S ribosomal protein S16 OS=Neurospora crassa GN=rps-16 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.333e-34
Identity = 66/114 (57.89%), Postives = 88/114 (77.19%), Query Frame = 3
Query:   57 TESVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            T++VQ FG+   A AV  C +G+GLIK+NG P++L  PEILR K +EPILLLG  +F  VD+R++V GGGH S +YA+RQ+IAKA+VA+Y KYVDE SK  +K  L+++DRTLL
Sbjct:    3 TQAVQVFGKKKNATAVARCVQGKGLIKVNGVPLKLYAPEILRAKLYEPILLLGTDKFAEVDIRLKVSGGGHVSQVYAVRQAIAKAIVAYYAKYVDEHSKNTLKTALIQFDRTLL 116          

HSP 2 Score: 25.409 bits (54), Expect = 1.333e-34
Identity = 12/24 (50.00%), Postives = 12/24 (50.00%), Query Frame = 1
Query:  400 VADPRRCEPXXXXXXXXXXXXQKS 471
            VADPRRCEP            QKS
Sbjct:  117 VADPRRCEPKKFGGKGARSRFQKS 140          
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_KLULA (40S ribosomal protein S16 OS=Kluyveromyces lactis GN=RPS16 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 2.100e-34
Identity = 68/112 (60.71%), Postives = 88/112 (78.57%), Query Frame = 3
Query:   63 SVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            SVQ FG+  +A AV + K G+GLIK+NG PI LV+PEILRFK +EP+LL+G  +F  +D+R++V GGGH S +YAIRQ+IAK LVA++QK+VDEQSK E+K     YDRTLL
Sbjct:    6 SVQTFGKKKSATAVAHVKAGKGLIKVNGSPITLVQPEILRFKVYEPLLLVGLDKFANIDIRVKVTGGGHVSQVYAIRQAIAKGLVAYHQKFVDEQSKNELKKAFTSYDRTLL 117          
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS16_DICDI (40S ribosomal protein S16 OS=Dictyostelium discoideum GN=rps16 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.989e-34
Identity = 64/121 (52.89%), Postives = 93/121 (76.86%), Query Frame = 3
Query:   36 MATAAPKTESVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            M+  AP+   VQ  G+  TAVAV Y   G+GLIK+NG P+E ++P+ L+ K +EP+L++G+  F+ VD+R+RV+GGG  + IYAIRQ+IAK++VA++QKYVDE+SK EIK  ++ YDR+LL
Sbjct:    1 MSAVAPQKNVVQTHGKKRTAVAVAYATNGKGLIKVNGVPLEFIQPKNLKLKVYEPVLIVGKDVFSQVDIRVRVRGGGSVAQIYAIRQAIAKSIVAYHQKYVDEESKNEIKKKILDYDRSLL 121          

HSP 2 Score: 25.409 bits (54), Expect = 4.989e-34
Identity = 12/24 (50.00%), Postives = 12/24 (50.00%), Query Frame = 1
Query:  400 VADPRRCEPXXXXXXXXXXXXQKS 471
            VADPRRCEP            QKS
Sbjct:  122 VADPRRCEPKKFGGRGARARFQKS 145          
The following BLAST results are available for this feature:
BLAST of DY259927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
RS16_CAEEL4.522e-3762.8340S ribosomal protein S16 OS=Caenorhabditis elegan... [more]
RS16_CANAL3.828e-3662.2840S ribosomal protein S16 OS=Candida albicans GN=R... [more]
RS16_YEAST6.529e-3663.3940S ribosomal protein S16 OS=Saccharomyces cerevis... [more]
RS16_CANGA4.232e-3562.5040S ribosomal protein S16 OS=Candida glabrata GN=R... [more]
RS16_SACEX9.428e-3560.7140S ribosomal protein S16 OS=Saccharomyces exiguus... [more]
RS16_ASHGO9.428e-3561.6140S ribosomal protein S16 OS=Ashbya gossypii GN=RP... [more]
RS16_DEBHA1.231e-3458.7740S ribosomal protein S16 OS=Debaryomyces hansenii... [more]
RS16_NEUCR1.333e-3457.8940S ribosomal protein S16 OS=Neurospora crassa GN=... [more]
RS16_KLULA2.100e-3460.7140S ribosomal protein S16 OS=Kluyveromyces lactis ... [more]
RS16_DICDI4.989e-3452.8940S ribosomal protein S16 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YK17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259927 ID=DY259927; Name=DY259927; organism=Citrus clementina; type=EST; length=1063bp
CACAACACAAACTTTCACTAAGCACTGATCCCAACATGGCTACTGCTGCT
CCTAAAACCGAGTCCGTGCAATGCTTCGGCCGCAATATGACGGCGGTGGC
AGTAACCTACTGCAAGCGCGGCCGCGGCTTGATCAAGATCAACGGCTGCC
CAATCGAGCTTGTGGAGCCAGAGATCCTGCGTTTCAAGGCCTTCGAGCCG
ATCCTATTGCTCGGACGACACCGTTTCAACGGAGTAGACATGAGGATCCG
CGTCAAGGGCGGAGGCCACACGTCTCATATCTACGCTATACGCCAGAGCA
TCGCGAAGGCCTTGGTCGCGTTTTATCAGAAGTACGTGGACGAACAGAGC
AAGAAGGAGATAAAAGACATTCTGGTTAGGTACGATAGGACTTTGCTTTG
TGGCTGATCCTAGACGCTGTGAGCCTAAGAAGTTCGGAGGAGGCGGCGCC
AGGGGTAGGTTCCAGAAATCATAACCGTAAAGAAACAGAAGTTTAGGTTG
GCCTTTTTATTATTGATAATAATTTTGGGTTTTCATCGAACCGATACATT
AAATCGTTCCTTTAACCCAACCTAAATATTGAAAAGGCTAAAACTAATAG
TAAAATGAGAAAATTTAGGTTCAGAAAGAGATCAAAAAGATATTAGATTC
TGCTAACTCAAAATAGGATGTTAAATTAGATCGATAAAGGATATAACAGA
TTTTATACCATGATTATCAAGACAGGATCATAAAGAAAGGTAAAATCTAA
AATACTATCACAAGCACAGGATTACTGATCACCATCTCAAGTCTGCATCC
ATCATTAATCAAACTTACAGAAACCATTTCTAAAAAATAGTGTATCTAAG
ACCAAAGTATGAAAACAGAAAACGTGGAGACAAAAAATCAATATTAGCAG
ATATAACTACTCGTCAACGGTGAGACCCTCAAATAAATAGCATCCTATCA
AACGCACAAATCCAGTCAAATCCTAAATCAAATATATCTGAAACTATTCC
TTATCCGCTGACCCCTACCCTCCCCGTCACACGCTCTATCCTCACCATCC
CCTAACCGCGACT
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