DY259927

Overview
NameDY259927
Unique NameDY259927
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1063
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS9_METMP (30S ribosomal protein S9P OS=Methanococcus maripaludis GN=rps9p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.044e-13
Identity = 43/111 (38.74%), Postives = 64/111 (57.66%), Query Frame = 3
Query:   66 VQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            V   G+  TA+A    K G G I+IN  P+EL+EP+ ++ K  EP++L G    + +D+ I VKGGG  S + A R ++ KA+V F         K ++K+  + YDRTLL
Sbjct:    4 VHTVGKRRTAIARATAKEGSGKIRINKKPLELMEPKYIKMKLMEPVILAG-EALSNIDVDIDVKGGGIVSQMDATRTALGKAIVEF-------TGKMDLKEKFLSYDRTLL 106          
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS9_META3 (30S ribosomal protein S9P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps9p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 2.044e-13
Identity = 45/111 (40.54%), Postives = 62/111 (55.86%), Query Frame = 3
Query:   66 VQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            V   G+  TA+A    K G+G I+IN  PIE+VEP+ +  K  EPI+L G    +G+D+ I V GGG    + A R ++ KA+V F           E+KD  V YDRT+L
Sbjct:    4 VHTVGKRKTAIARATAKEGKGRIRINKKPIEIVEPKYINAKLMEPIILAG-DVVDGIDIDITVNGGGIVGQMDAARTALGKAIVEF-------TGDMELKDRFVHYDRTIL 106          
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS9_METVS (30S ribosomal protein S9P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rps9p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.553e-13
Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = 3
Query:   66 VQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            V   G+  TA+A      G G I+IN  P+EL+EP+ ++ K  EP++L G      +D+ + VKGGG  S + A R ++ KA++ F         K E+K++ + YDRTLL
Sbjct:    4 VHTVGKRRTAIARATATEGSGKIRINKKPLELMEPKYIKMKLMEPVILAG-EILGSIDVDVDVKGGGTVSQMDAARTALGKAIIEF-------TGKMELKEMFLSYDRTLL 106          
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS9_THEAC (30S ribosomal protein S9P OS=Thermoplasma acidophilum GN=rps9p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.730e-12
Identity = 41/107 (38.32%), Postives = 67/107 (62.62%), Query Frame = 3
Query:   78 GRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            G+  TAVA    K+G+G++ ING P+EL    +LR K  EP LL+   +   +D+ ++V+GGG T    A R +IA+A+V    KY+++    E++++  +YDRTL+
Sbjct:    5 GKRKTAVARAVAKKGKGIVTINGYPVELYPVRVLRNKIMEP-LLIAEDKAKDLDIAVKVRGGGVTGQADASRTAIARAIV----KYLND---TELENLFRQYDRTLI 103          
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RLSX_METTH (Fused L13/S9 ribosomal protein OS=Methanobacterium thermoautotrophicum GN=rpl13p/rps9p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.730e-12
Identity = 43/109 (39.45%), Postives = 60/109 (55.05%), Query Frame = 3
Query:   78 GRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLCG 404
            G+  TA+A    + G+G ++IN  P+EL  PE+ R K  EP+ L G    N VD+ +RV GGG      A R  IA+ L       VD  S  ++K+  V+YDRT+L G
Sbjct:  158 GKRKTAIARGTIREGKGRVRINKVPVELYTPELARLKIMEPLKLAG-DVINDVDINVRVVGGGIVGQAEAARMVIARGL-------VDWTSDMDLKEKFVQYDRTMLVG 258          
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS9_DESK1 (30S ribosomal protein S9P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps9p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.260e-12
Identity = 42/121 (34.71%), Postives = 66/121 (54.55%), Query Frame = 3
Query:   42 TAAPKTESVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLCG 404
            T + K + V   G+  T++A    K G G + IN  P+E ++ E+ + K  EP+LL+G      VD+R+ V GGG+ S   A+R +IA+ LV F+       +  E+K +   YDR +L G
Sbjct:    4 TLSDKIKIVVSSGKRKTSIARAVIKPGIGRVWINNVPVEFIQFELAKMKILEPLLLIG-DLAKTVDIRVNVHGGGYMSQAEAVRIAIARGLVEFF-------NSDEVKSLFKEYDRHMLSG 116          
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS9_SULTO (30S ribosomal protein S9P OS=Sulfolobus tokodaii GN=rps9p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.034e-12
Identity = 39/117 (33.33%), Postives = 64/117 (54.70%), Query Frame = 3
Query:   54 KTESVQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLCG 404
            +++ +  + R   A A  Y   G+G + +N  P+E++  E++R K  EP+LL G    + +D +I V+GGG      A R ++A+ALV F          KE+++I   YDRT+L G
Sbjct:    4 QSQVIITYARRKMARARCYITPGKGRVFVNDIPLEIIPMEVVRMKIMEPLLLAGEKISSSIDAKIYVEGGGVMGQADAARMALARALVKF-------TGSKELEEIYKVYDRTMLAG 113          
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS9_SULAC (30S ribosomal protein S9P OS=Sulfolobus acidocaldarius GN=rps9p PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 5.034e-12
Identity = 39/110 (35.45%), Postives = 61/110 (55.45%), Query Frame = 3
Query:   75 FGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLCG 404
            + R  +A A  Y K G G + +N  PIE++  E++R+K  EP++L G    + ++ RI  +GGG      A R ++A+ALV F        + KE+ +I   YDRT+L G
Sbjct:   12 YARRKSARASCYIKPGNGKVFVNDIPIEIIPIEVVRYKIMEPLVLAGDKITSSIEARIYTQGGGIMGQADAARMALARALVKF-------TNSKELVEIYKSYDRTMLAG 114          
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS9_METKA (30S ribosomal protein S9P OS=Methanopyrus kandleri GN=rps9p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 5.034e-12
Identity = 37/113 (32.74%), Postives = 63/113 (55.75%), Query Frame = 3
Query:   66 VQCFGRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLCG 404
            VQ  G+  TA+A    + G G +++N  P+ ++EPE+ R K  EP+++ G    + VD+ ++V+GGG  S   A R +IA+ LV +           +++D  + YDR +L G
Sbjct:    5 VQTTGKRKTAIARAVIREGEGRVRVNKRPVNIIEPEMARMKIMEPLIIAGEDIVSQVDIDVKVQGGGWMSQAEAARIAIARGLVEW-------TGDPDLRDAYMAYDRHMLKG 110          
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS9_AERPE (30S ribosomal protein S9P OS=Aeropyrum pernix GN=rps9p PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 8.587e-12
Identity = 40/118 (33.90%), Postives = 68/118 (57.63%), Query Frame = 3
Query:   78 GRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQ---------KYVDEQSKKEIKDILVRYDRTLLCG 404
            G+   A+A    + GRG + ING P+E+   E+ R K  EP+L+ G    + VD+R+RV+GGG      A+R +IA+ LV F++         + +D+ S ++++   + +DRT+L G
Sbjct:   11 GKRKRAIARAVIRPGRGRVWINGVPLEIYPIEMARIKMMEPLLIAGEGVRSLVDIRVRVEGGGVMGQADAVRMAIARGLVEFFRCEESDDELCRMMDKIS-RDLRTAFLEHDRTMLVG 127          
The following BLAST results are available for this feature:
BLAST of DY259927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
RS9_METMP2.044e-1338.7430S ribosomal protein S9P OS=Methanococcus maripal... [more]
RS9_META32.044e-1340.5430S ribosomal protein S9P OS=Methanococcus aeolicu... [more]
RS9_METVS4.553e-1336.9430S ribosomal protein S9P OS=Methanococcus vanniel... [more]
RS9_THEAC1.730e-1238.3230S ribosomal protein S9P OS=Thermoplasma acidophi... [more]
RLSX_METTH1.730e-1239.45Fused L13/S9 ribosomal protein OS=Methanobacterium... [more]
RS9_DESK12.260e-1234.7130S ribosomal protein S9P OS=Desulfurococcus kamch... [more]
RS9_SULTO5.034e-1233.3330S ribosomal protein S9P OS=Sulfolobus tokodaii G... [more]
RS9_SULAC5.034e-1235.4530S ribosomal protein S9P OS=Sulfolobus acidocalda... [more]
RS9_METKA5.034e-1232.7430S ribosomal protein S9P OS=Methanopyrus kandleri... [more]
RS9_AERPE8.587e-1233.9030S ribosomal protein S9P OS=Aeropyrum pernix GN=r... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YK17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259927 ID=DY259927; Name=DY259927; organism=Citrus clementina; type=EST; length=1063bp
CACAACACAAACTTTCACTAAGCACTGATCCCAACATGGCTACTGCTGCT
CCTAAAACCGAGTCCGTGCAATGCTTCGGCCGCAATATGACGGCGGTGGC
AGTAACCTACTGCAAGCGCGGCCGCGGCTTGATCAAGATCAACGGCTGCC
CAATCGAGCTTGTGGAGCCAGAGATCCTGCGTTTCAAGGCCTTCGAGCCG
ATCCTATTGCTCGGACGACACCGTTTCAACGGAGTAGACATGAGGATCCG
CGTCAAGGGCGGAGGCCACACGTCTCATATCTACGCTATACGCCAGAGCA
TCGCGAAGGCCTTGGTCGCGTTTTATCAGAAGTACGTGGACGAACAGAGC
AAGAAGGAGATAAAAGACATTCTGGTTAGGTACGATAGGACTTTGCTTTG
TGGCTGATCCTAGACGCTGTGAGCCTAAGAAGTTCGGAGGAGGCGGCGCC
AGGGGTAGGTTCCAGAAATCATAACCGTAAAGAAACAGAAGTTTAGGTTG
GCCTTTTTATTATTGATAATAATTTTGGGTTTTCATCGAACCGATACATT
AAATCGTTCCTTTAACCCAACCTAAATATTGAAAAGGCTAAAACTAATAG
TAAAATGAGAAAATTTAGGTTCAGAAAGAGATCAAAAAGATATTAGATTC
TGCTAACTCAAAATAGGATGTTAAATTAGATCGATAAAGGATATAACAGA
TTTTATACCATGATTATCAAGACAGGATCATAAAGAAAGGTAAAATCTAA
AATACTATCACAAGCACAGGATTACTGATCACCATCTCAAGTCTGCATCC
ATCATTAATCAAACTTACAGAAACCATTTCTAAAAAATAGTGTATCTAAG
ACCAAAGTATGAAAACAGAAAACGTGGAGACAAAAAATCAATATTAGCAG
ATATAACTACTCGTCAACGGTGAGACCCTCAAATAAATAGCATCCTATCA
AACGCACAAATCCAGTCAAATCCTAAATCAAATATATCTGAAACTATTCC
TTATCCGCTGACCCCTACCCTCCCCGTCACACGCTCTATCCTCACCATCC
CCTAACCGCGACT
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