DY259927

Overview
NameDY259927
Unique NameDY259927
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1063
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS9_PYRAE (30S ribosomal protein S9P OS=Pyrobaculum aerophilum GN=rps9p PE=3 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.122e-11
Identity = 42/109 (38.53%), Postives = 62/109 (56.88%), Query Frame = 3
Query:   78 GRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLCG 404
            G+  TAVA    K G G ++ING P+EL   E+ R K  EP++L G      VD+ + V GGG+     A+R ++A+ LVAF+Q        +E+K++  RYD  +L G
Sbjct:   18 GKKKTAVARAIIKPGIGRVRINGYPLELWPIEMARIKMSEPLILAG-ELAKKVDIDVNVSGGGYMGQAVAVRIAMARGLVAFFQ-------SQELKELYERYDPYMLKG 118          
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS9_HALSA (30S ribosomal protein S9P OS=Halobacterium salinarium GN=rps9p PE=3 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.913e-11
Identity = 41/107 (38.32%), Postives = 55/107 (51.40%), Query Frame = 3
Query:   78 GRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            G+  TAVA      G G ++IN  P+ELVEPE+ R K  EP  + G      VD+ I V GGG      A+R +IA+ LV  Y          E++D    +DR+LL
Sbjct:    7 GKKKTAVARATVSDGEGRVRINSQPVELVEPEMARLKMLEPFRISGSDLRGDVDIDIDVAGGGFAGQADAVRTAIARGLVEHY-------GDAELRDAFREFDRSLL 106          
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS9_SULSO (30S ribosomal protein S9P OS=Sulfolobus solfataricus GN=rps9p PE=3 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 2.498e-11
Identity = 41/108 (37.96%), Postives = 57/108 (52.78%), Query Frame = 3
Query:   81 RNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLLCG 404
            R  TA A  Y   G+G + +N  PIEL+  E++R K  EP+LL G    + +D +I   GGG      A R ++A+ALV F          KE++ I   YDRT+L G
Sbjct:   13 RRKTARATCYIYAGKGRVFVNNVPIELIPIEMVRLKIMEPLLLAGNDIRSKIDAKIITYGGGIMGQADAARMALARALVKF-------TGSKELEKIYRAYDRTMLAG 113          
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS9_PICTO (30S ribosomal protein S9P OS=Picrophilus torridus GN=rps9p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.262e-11
Identity = 42/107 (39.25%), Postives = 62/107 (57.94%), Query Frame = 3
Query:   78 GRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            G+  TA+A    ++G G   ING PIEL   EILR K  EPI +LG  R   +D+ + V GGG+T    A R ++AKA++ +++   D   + EI+     YDR++L
Sbjct:    9 GKRKTAIARAIIRKGSGKFLINGYPIELYPIEILREKMLEPIRILG-DRSKEIDIDVNVHGGGNTGQADATRTAMAKAIIEYFK---DSDLEAEIR----AYDRSML 107          
BLAST of DY259927 vs. ExPASy Swiss-Prot
Match: RS9_ARCFU (30S ribosomal protein S9P OS=Archaeoglobus fulgidus GN=rps9p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.269e-11
Identity = 37/107 (34.58%), Postives = 59/107 (55.14%), Query Frame = 3
Query:   78 GRNMTAVAVTYCKRGRGLIKINGCPIELVEPEILRFKAFEPILLLGRHRFNGVDMRIRVKGGGHTSHIYAIRQSIAKALVAFYQKYVDEQSKKEIKDILVRYDRTLL 398
            G+  TA A    K G+G ++IN  P+E+ +PE+ R K  EP L++ +     VD+ ++  GGG  +   A R +IA+AL+ F          +E++   + YDRTLL
Sbjct:   11 GKRKTATARAVIKPGKGRVRINSVPVEIHQPELARMKIMEP-LIIAKELAEKVDIEVKTWGGGFMAQAEAARTAIARALLEF-------SGDEELRKAFLEYDRTLL 109          
The following BLAST results are available for this feature:
BLAST of DY259927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
RS9_PYRAE1.122e-1138.5330S ribosomal protein S9P OS=Pyrobaculum aerophilu... [more]
RS9_HALSA1.913e-1138.3230S ribosomal protein S9P OS=Halobacterium salinar... [more]
RS9_SULSO2.498e-1137.9630S ribosomal protein S9P OS=Sulfolobus solfataric... [more]
RS9_PICTO4.262e-1139.2530S ribosomal protein S9P OS=Picrophilus torridus ... [more]
RS9_ARCFU7.269e-1134.5830S ribosomal protein S9P OS=Archaeoglobus fulgidu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YK17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259927 ID=DY259927; Name=DY259927; organism=Citrus clementina; type=EST; length=1063bp
CACAACACAAACTTTCACTAAGCACTGATCCCAACATGGCTACTGCTGCT
CCTAAAACCGAGTCCGTGCAATGCTTCGGCCGCAATATGACGGCGGTGGC
AGTAACCTACTGCAAGCGCGGCCGCGGCTTGATCAAGATCAACGGCTGCC
CAATCGAGCTTGTGGAGCCAGAGATCCTGCGTTTCAAGGCCTTCGAGCCG
ATCCTATTGCTCGGACGACACCGTTTCAACGGAGTAGACATGAGGATCCG
CGTCAAGGGCGGAGGCCACACGTCTCATATCTACGCTATACGCCAGAGCA
TCGCGAAGGCCTTGGTCGCGTTTTATCAGAAGTACGTGGACGAACAGAGC
AAGAAGGAGATAAAAGACATTCTGGTTAGGTACGATAGGACTTTGCTTTG
TGGCTGATCCTAGACGCTGTGAGCCTAAGAAGTTCGGAGGAGGCGGCGCC
AGGGGTAGGTTCCAGAAATCATAACCGTAAAGAAACAGAAGTTTAGGTTG
GCCTTTTTATTATTGATAATAATTTTGGGTTTTCATCGAACCGATACATT
AAATCGTTCCTTTAACCCAACCTAAATATTGAAAAGGCTAAAACTAATAG
TAAAATGAGAAAATTTAGGTTCAGAAAGAGATCAAAAAGATATTAGATTC
TGCTAACTCAAAATAGGATGTTAAATTAGATCGATAAAGGATATAACAGA
TTTTATACCATGATTATCAAGACAGGATCATAAAGAAAGGTAAAATCTAA
AATACTATCACAAGCACAGGATTACTGATCACCATCTCAAGTCTGCATCC
ATCATTAATCAAACTTACAGAAACCATTTCTAAAAAATAGTGTATCTAAG
ACCAAAGTATGAAAACAGAAAACGTGGAGACAAAAAATCAATATTAGCAG
ATATAACTACTCGTCAACGGTGAGACCCTCAAATAAATAGCATCCTATCA
AACGCACAAATCCAGTCAAATCCTAAATCAAATATATCTGAAACTATTCC
TTATCCGCTGACCCCTACCCTCCCCGTCACACGCTCTATCCTCACCATCC
CCTAACCGCGACT
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