DY259953

Overview
NameDY259953
Unique NameDY259953
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length977
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259953 vs. ExPASy Swiss-Prot
Match: PHAS_MYCBP (Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=pks2 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.230e-22
Identity = 57/209 (27.27%), Postives = 104/209 (49.76%), Query Frame = 1
Query:   46 ITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGNEEKLAVCKDLGADVCILYKTEDFVARMKEETGGKGVDVILD 672
            I  PG  + ++L           ++ + V A+++N AD L   G YP  +G  P  G + +G + +VG  V+  KVGD V  +   G +   V   A     +P G+    AAA      T W  +   + +  G++ L+H G+ G+G  AI + +  G  +F TAG  ++  + +++G +     ++ +F  +++ +T G+GVDV+L+
Sbjct: 1432 IRTPGDMQTIELAAFHRVPPGPGQIEVAVRASSVNFADVLIAFGRYPSFEGHLPQLGTDFAGVVTAVGPGVTDHKVGDHVGGMSPNGCWGTFVTCDARLAATLPPGLGDAQAAAVTTAHATAWYGLHELARIRAGDTVLIHSGTGGVGQAAIAIARAAGAEIFATAGTPQRRELLRNMGIEHVYDSRSIEFAEQIRRDTNGRGVDVVLN 1640          
BLAST of DY259953 vs. ExPASy Swiss-Prot
Match: PHAS_MYCBO (Phthioceranic/hydroxyphthioceranic acid synthase OS=Mycobacterium bovis GN=pks2 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.230e-22
Identity = 57/209 (27.27%), Postives = 104/209 (49.76%), Query Frame = 1
Query:   46 ITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGNEEKLAVCKDLGADVCILYKTEDFVARMKEETGGKGVDVILD 672
            I  PG  + ++L           ++ + V A+++N AD L   G YP  +G  P  G + +G + +VG  V+  KVGD V  +   G +   V   A     +P G+    AAA      T W  +   + +  G++ L+H G+ G+G  AI + +  G  +F TAG  ++  + +++G +     ++ +F  +++ +T G+GVDV+L+
Sbjct: 1432 IRTPGDMQTIELAAFHRVPPGPGQIEVAVRASSVNFADVLIAFGRYPSFEGHLPQLGTDFAGVVTAVGPGVTDHKVGDHVGGMSPNGCWGTFVTCDARLAATLPPGLGDAQAAAVTTAHATAWYGLHELARIRAGDTVLIHSGTGGVGQAAIAIARAAGAEIFATAGTPQRRELLRNMGIEHVYDSRSIEFAEQIRRDTNGRGVDVVLN 1640          
BLAST of DY259953 vs. ExPASy Swiss-Prot
Match: VAT1_TORCA (Synaptic vesicle membrane protein VAT-1 OS=Torpedo californica PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.175e-20
Identity = 70/225 (31.11%), Postives = 119/225 (52.89%), Query Frame = 1
Query:   16 ESEGTMKAIVITQPGSPEVLQLQEVED-PQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCAL-LGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTAGNEEKLAVCKDLGADVCILYKTEDFVARMKEETGGKGVDVILDCLG 681
            E E +  AIV+   G  + ++++  +  P +K DE+L++V+A  LN +D L R+G++    G     G EC+G + ++G  V   KVGD++  L + GG + E V     +   +P G+S ++AAA        +  ++  ++L P +S L+H  + G+G  A Q+ K    V +F TA +  K    K+ G    I Y T D+   ++ +   KGVD++LD LG
Sbjct:   22 EPEISYNAIVLNGVGGYDKVKVEVKKGVPTLKSDEILVRVQACGLNFSDLLVRQGAF----GKHHSLGTECAGVVEAIGDLVIDRKVGDKIIMLNIDGGLWTELVVTTVNRTFLMPDGMSFQEAAAISVNYTAAYVMIYDFANLRPSQSILIHMAAGGVGIAATQLCKLVHDVTIFGTA-SPSKHETIKENGVTYPIDYTTLDYAEEVR-KIAPKGVDIVLDPLG 240          
BLAST of DY259953 vs. ExPASy Swiss-Prot
Match: MCAS_MYCBO (Mycocerosic acid synthase OS=Mycobacterium bovis GN=mas PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 1.175e-20
Identity = 53/213 (24.88%), Postives = 106/213 (49.77%), Query Frame = 1
Query:   40 IVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGNEEKLAVCKDLGADVCILYKTEDFVARMKEETGGKGVDVILDCL 678
            + + +PG  + L+    +       ++ + V  +++N AD L   G +P      P  G++  G + +VG+ V+  +VGD+V     GG +   +   A   + +P G++ + A        T W  +   + +  G+  L+H  + G+G  AI + + +G  +F TAGN  K A+ +D+G +     ++ +F  +++ +T G GVD++L+ L
Sbjct: 1423 VQVRRPGDLQTLEFVASDRVPPGPGQIEVAVSMSSINFADVLIAFGRFPIIDDREPQLGMDFVGVVTAVGEGVTGHQVGDRVGGFSEGGCWRTFLTCDANLAVTLPPGLTDEQAITAATAHATAWYGLNDLAQIKAGDKVLIHSATGGVGQAAISIARAKGAEIFATAGNPAKRAMLRDMGVEHVYDSRSVEFAEQIRRDTDGYGVDIVLNSL 1635          
BLAST of DY259953 vs. ExPASy Swiss-Prot
Match: QORL2_NEMVE (Quinone oxidoreductase-like protein 2 homolog OS=Nematostella vectensis GN=v1g238856 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.697e-19
Identity = 61/223 (27.35%), Postives = 110/223 (49.33%), Query Frame = 1
Query:   34 KAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVCALLG-GGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGNEEKLAVCKDLGADVCILYKTEDFVARMKEETGGKGVDVILDCLGTSHFQR 699
            +A++  + G P V++  +     +   +V + V +  +N AD L+  G Y         PG E SG ++ VG  V+    GD+V  + G GGG AE+  +P   +  +PS +S   AAA      T +  +   ++L PG++ LV   +  +G  ++ +         + A  +EKL + +++GA   I Y  E+   ++KE T G G +VI++ +G   F++
Sbjct:   40 RAVMCNELGKPLVVE-DKFSTENLGTSQVRVAVHSCGINFADILKCIGKYQEKPELPFVPGTEISGEVVEVGSKVTSLSKGDRVLGVCGQGGGMAEECVLPQTALWKIPSSLSFTQAAALAISYGTAYIGLKHKANLQPGQTVLVTAAAGALGLASVDLAANVFGAKVIGASRKEKLVIVQEIGATATIDYTRENIKDKVKELTDGHGANVIMEAVGGDVFKQ 261          
BLAST of DY259953 vs. ExPASy Swiss-Prot
Match: QOR_SCHPO (Probable quinone oxidoreductase OS=Schizosaccharomyces pombe GN=zta1 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.779e-19
Identity = 68/216 (31.48%), Postives = 102/216 (47.22%), Query Frame = 1
Query:   40 IVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPY-PGLECSGTILSVGKNVSR-WKVGDQVCALLGGGGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGNEEKLAVCKDLGADVCILYKTEDFVARMKEETGGKGVDVILDCLG 681
            + +++ G   VLQ+   E P+   + ++IK     LN  DT  R G Y  P    PY PG E +G + +VG  V   +KVGD+V  L   G YA+   VP   V  V   + LK A+A      T ++ +     +  G++ +VH  + G+G    QM + + V V  TA    K  +    GA++   Y  ED    + + T GKGVD   D +G
Sbjct:    6 VQVSKTGPSSVLQVITKEIPKPAPNGLVIKNAYAGLNYIDTYLRTGLYTAPL---PYIPGKEAAGVVAAVGDKVEADFKVGDRVVYLTPFGAYAQYTNVPTTLVSKVSEKIPLKIASAALLQGLTAYTLIEEAYPVKTGDTVVVHAAAGGVGLLLCQMLRARNVHVIATASTAAKRRIAIKNGAEIACSY--EDLTKVVADYTNGKGVDAAYDSVG 216          
BLAST of DY259953 vs. ExPASy Swiss-Prot
Match: QORL_ARATH (Quinone oxidoreductase-like protein At1g23740, chloroplastic OS=Arabidopsis thaliana GN=At1g23740 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.779e-19
Identity = 74/229 (32.31%), Postives = 109/229 (47.60%), Query Frame = 1
Query:   31 MKAIVITQPGSPEVLQLQE-VEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASP-YPGLECSGTILSVGKNVSRWKVGDQVCALLGG---------GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGK-CQGVRVFVTAGNEEKLAVCKDLGADVCILYKTEDFVARMKEETGGKGVDVILDCLG 681
            MKA V +  G  +VL+L+  +  P+IK+D+VLIKV A ALN  D  +R+G +       P  PG + +G ++ VG  V   K GD+V A +           G  AE  AV    +   P  +    AA  P +A        + +  S G+S LV  G+ G+G+  IQ+ K   G        + EKL + + LGAD+ I Y  E+      E+   K  DV+ D +G
Sbjct:   78 MKAWVYSDYGGVDVLKLESNIVVPEIKEDQVLIKVVAAALNPVDAKRRQGKFKATDSPLPTVPGYDVAGVVVKVGSAVKDLKEGDEVYANVSEKALEGPKQFGSLAEYTAVEEKLLALKPKNIDFAQAAGLP-LAIETADEGLVRTEFSAGKSILVLNGAGGVGSLVIQLAKHVYGASKVAATASTEKLELVRSLGADLAIDYTKENI-----EDLPDK-YDVVFDAIG 299          
BLAST of DY259953 vs. ExPASy Swiss-Prot
Match: YGD6_SCHPO (Zinc-type alcohol dehydrogenase-like protein C1773.06c OS=Schizosaccharomyces pombe GN=SPBC1773.06c PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.936e-19
Identity = 71/228 (31.14%), Postives = 111/228 (48.68%), Query Frame = 1
Query:   73 LQLQEVEDPQ-IKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQVC------------------ALLGG---GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTS--HLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGNEEKLAVCKDLGADVCILY-KTEDFVARMKEETGGKGVDVILDCLG 681
            L+ +E E PQ +   EVL+K++A +LN  D +  KG YP P      PG + +G I  VG++V  ++ GD V                   + LGG   G + +   +PA  ++  P  +S ++ A  P  A T W+ +F +    + PG + LV  G+ G+ TFA+Q     G  V VT+ ++EKL   K LGA   I Y KT  + +   + T G G   +++  G
Sbjct:   17 LKPEEYEVPQKLNPGEVLVKLKAASLNYRDLIITKGLYPLPLQLPVVPGSDGAGIIEKVGEDVEGFEKGDSVVCNFFTNYLDGTPTDFATHSALGGTRDGCFQKYAVLPAHALVHAPKNLSFEEIATLPCAAVTAWNGLFGSKEHQVKPGNNVLVL-GTGGVSTFALQFALAAGANVTVTSSSDEKLEFAKKLGATHTINYKKTPQWASPALKMTNGVGYHHVIEVGG 243          
BLAST of DY259953 vs. ExPASy Swiss-Prot
Match: ADH1_BACST (Alcohol dehydrogenase OS=Bacillus stearothermophilus GN=adhT PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 8.420e-19
Identity = 75/240 (31.25%), Postives = 108/240 (45.00%), Query Frame = 1
Query:   31 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQV--------CA----LLGG----------------GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGNEEKLAVCKDLGADVCILYKTEDFVARMKEETGGKGVDVI 666
            MKA V+ Q   P  LQ++EVE P+I   EVL++++A  +   D     G +P        PG E  G I  VG  V+  KVGD+V        C      L G                GGYAE     A  V+ +P  +S ++AA       T +  + +T    PGE   ++ G  G+G  A+Q  K  G+ V      +EKL + K LGAD+ +  K +D    +KE+ GG    V+
Sbjct:    1 MKAAVVEQFKKP--LQVKEVEKPKISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGVIEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCERQQNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTG-AKPGEWVAIY-GIGGLGHVAVQYAKAMGLNVVAVDLGDEKLELAKQLGADLVVNPKHDDAAQWIKEKVGGVHATVV 236          
BLAST of DY259953 vs. ExPASy Swiss-Prot
Match: ADH3_BACST (Alcohol dehydrogenase OS=Bacillus stearothermophilus PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.200e-18
Identity = 74/240 (30.83%), Postives = 107/240 (44.58%), Query Frame = 1
Query:   31 MKAIVITQPGSPEVLQLQEVEDPQIKDDEVLIKVEATALNRADTLQRKGSYPPPKGASPYPGLECSGTILSVGKNVSRWKVGDQV--------CA----LLGG----------------GGYAEKVAVPAGQVLPVPSGVSLKDAAAFPEVACTVWSTVFMTSHLSPGESFLVHGGSSGIGTFAIQMGKCQGVRVFVTAGNEEKLAVCKDLGADVCILYKTEDFVARMKEETGGKGVDVI 666
            MKA V+ Q   P  L+++EVE P I   EVL++++A  +   D     G +P        PG E  G +  VG  V+  KVGD+V        C      L G                GGYAE     A  V+ +P  +S ++AA       T +  + +T    PGE   ++ G  G+G  A+Q  K  G+ V      +EKL + K+LGAD+ +    ED    MKE+ GG    V+
Sbjct:    1 MKAAVVEQFKEP--LKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKNAGYSVDGGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTYKALKVTG-AKPGEWVAIY-GIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVV 236          
The following BLAST results are available for this feature:
BLAST of DY259953 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
PHAS_MYCBP6.230e-2227.27Phthioceranic/hydroxyphthioceranic acid synthase O... [more]
PHAS_MYCBO6.230e-2227.27Phthioceranic/hydroxyphthioceranic acid synthase O... [more]
VAT1_TORCA1.175e-2031.11Synaptic vesicle membrane protein VAT-1 OS=Torpedo... [more]
MCAS_MYCBO1.175e-2024.88Mycocerosic acid synthase OS=Mycobacterium bovis G... [more]
QORL2_NEMVE1.697e-1927.35Quinone oxidoreductase-like protein 2 homolog OS=N... [more]
QOR_SCHPO3.779e-1931.48Probable quinone oxidoreductase OS=Schizosaccharom... [more]
QORL_ARATH3.779e-1932.31Quinone oxidoreductase-like protein At1g23740, chl... [more]
YGD6_SCHPO4.936e-1931.14Zinc-type alcohol dehydrogenase-like protein C1773... [more]
ADH1_BACST8.420e-1931.25Alcohol dehydrogenase OS=Bacillus stearothermophil... [more]
ADH3_BACST3.200e-1830.83Alcohol dehydrogenase OS=Bacillus stearothermophil... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YM02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259953 ID=DY259953; Name=DY259953; organism=Citrus clementina; type=EST; length=977bp
TTTAATTCTACTCTGGAAAGTGAAGGCACAATGAAGGCAATAGTGATAAC
TCAACCCGGTAGCCCAGAAGTGCTGCAGTTGCAAGAAGTAGAAGACCCTC
AAATCAAAGACGACGAAGTGTTGATCAAAGTCGAAGCTACTGCCCTGAAC
CGGGCCGACACTCTTCAACGAAAAGGCTCCTACCCTCCACCCAAAGGCGC
CAGCCCTTACCCGGGTCTCGAATGTTCCGGAACCATCCTGTCCGTTGGTA
AAAACGTCTCTAGATGGAAAGTCGGCGACCAGGTGTGTGCTCTGCTTGGT
GGAGGAGGGTATGCTGAGAAAGTGGCTGTTCCAGCTGGACAAGTTCTTCC
CGTTCCATCTGGTGTCTCACTCAAAGATGCTGCTGCGTTTCCGGAGGTGG
CTTGCACTGTTTGGTCAACGGTTTTCATGACCAGTCACCTATCCCCAGGG
GAGTCATTTCTGGTTCATGGGGGCTCTAGTGGAATTGGTACATTTGCGAT
TCAGATGGGAAAATGCCAAGGAGTGAGAGTCTTTGTTACAGCAGGAAATG
AGGAAAAGCTGGCTGTTTGCAAGGATCTTGGTGCGGATGTGTGCATCCTT
TACAAGACTGAGGATTTTGTTGCACGAATGAAGGAAGAAACTGGGGGGAA
AGGTGTTGATGTAATTTTAGATTGCCTGGGAACCTCCCACTTTCAGCGTA
ACCCTCCACAGCCCTGAACATTGATGGGAGGCTTTTCCTAATTGGACCCC
GGGTGGGACCAAAACCGAATTAAATATAACTTCCCCTGTTGCCAAACGCC
CCCTTGTGCAAGCGGTGGGTTCGCGAACCTAAAATAAAAAAAACAAAACT
TTATTTTCCTCGGGGCGGTAAAAAATGTTTGGCCCCCCACTGCCCATGGG
GAACGGGGACCCTCGCCTCCCCCTCTCTCCCCCCCTGCGGAAACCCCCCC
AACTCCCCCCCTCCCGGCGCAGAACCC
back to top