DY259954

Overview
NameDY259954
Unique NameDY259954
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length975
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259954 vs. ExPASy Swiss-Prot
Match: STAD_ORYSJ (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os04g0379900 PE=2 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.462e-55
Identity = 109/209 (52.15%), Postives = 142/209 (67.94%), Query Frame = 2
Query:   68 FLVTSTKRPAACSPLVPNPAH--HRLTAASSTV-RFRQISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRPGDLLKSFLDLSGRVHMLLIENTVPYLNSAGWTPGTK 673
            F  + T  P +C  +    ++   ++ A +ST+ R +       PP+       HS+PP+K E+F SL+ WA  N+L LLKPVEK WQPQDFLPDP+     F D+V+ LRER   +PDDYFV LVGDM+TE+A+PTYQTM+NTLDGVRDETGAS + WA+W R+WTAEENR GDLL  ++ L+GRV M  IE T+ YL  +G  PGT+
Sbjct:    3 FAASHTASPYSCGGVAQRRSNGMSKMVAMASTINRVKTAKKPYTPPREVHLQVKHSLPPQKREIFDSLQPWAKENLLNLLKPVEKSWQPQDFLPDPSS--DGFYDEVKELRERAKEIPDDYFVCLVGDMVTEEALPTYQTMLNTLDGVRDETGASPTTWAVWTRAWTAEENRHGDLLNKYMYLTGRVDMKQIEKTIQYLIGSGMDPGTE 209          
BLAST of DY259954 vs. ExPASy Swiss-Prot
Match: STAD_SPIOL (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 1.571e-55
Identity = 105/181 (58.01%), Postives = 130/181 (71.82%), Query Frame = 2
Query:  143 AASSTVRFRQISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRPGDLLKSFLDLSGRVHMLLIENTVPYLNSAGWTPGTK 673
            ++SS      +    +PP+      THSMP EK+E+FKSLE WA  N+L  LKPVEKCWQPQD+LPDP     DF DQV+ ++ER   +PDD +VVLVGDMITE+A+PTYQTM+NTLDG +DETGAS + WA+W R+WTAEENR GDLL  +L LSGRV M  IE T+ YL  +G  P T+
Sbjct:   40 SSSSPKEAESLKKPFSPPREVHVQVTHSMPQEKIEIFKSLEGWAEENLLVHLKPVEKCWQPQDYLPDPAS--EDFRDQVKEIQERAKEIPDDLYVVLVGDMITEEALPTYQTMLNTLDGAKDETGASPTSWAVWTRAWTAEENRHGDLLNKYLYLSGRVDMRSIEKTIQYLIGSGMDPRTE 218          

HSP 2 Score: 23.0978 bits (48), Expect = 1.571e-55
Identity = 8/13 (61.54%), Postives = 9/13 (69.23%), Query Frame = 3
Query:  660 PREQKKPYRGFVY 698
            PR +  PY GFVY
Sbjct:  215 PRTENNPYLGFVY 227          
BLAST of DY259954 vs. ExPASy Swiss-Prot
Match: STADS_BRANA (Acyl-[acyl-carrier-protein] desaturase, seed specific, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 4.538e-55
Identity = 104/155 (67.10%), Postives = 120/155 (77.42%), Query Frame = 2
Query:  209 HSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRPGDLLKSFLDLSGRVHMLLIENTVPYLNSAGWTPGTK 673
            HSMPP+K+E+FKS+E  A  N+LP LK VEK WQPQDFLPDP      F DQV+ LRER   LPDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS + WA+W R+WTAEENR GDLL  +L LSGRV M  IE T+ YL  +G  P T+
Sbjct:   66 HSMPPQKIEIFKSMEDRAEQNLLPHLKDVEKSWQPQDFLPDPAS--DGFEDQVKELRERARELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAVWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTE 218          

HSP 2 Score: 22.7126 bits (47), Expect = 4.538e-55
Identity = 7/13 (53.85%), Postives = 9/13 (69.23%), Query Frame = 3
Query:  660 PREQKKPYRGFVY 698
            PR +  PY GF+Y
Sbjct:  215 PRTENNPYLGFIY 227          
BLAST of DY259954 vs. ExPASy Swiss-Prot
Match: STAD_OLEEU (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Olea europaea PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.858e-53
Identity = 104/182 (57.14%), Postives = 126/182 (69.23%), Query Frame = 2
Query:  140 TAASSTVRFRQISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRPGDLLKSFLDLSGRVHMLLIENTVPYLNSAGWTPGTK 673
            T  S ++   ++     PP+      THS+ PEK E+F SL  WA  N+L LLK V+KCWQP DFLPD       F +QV  LR+R   +PDDYF+VLVGDMITE+A+PTYQTM+NTLDGVRDETGAS +PWAIW R+WTAEENR GDLL  +L LSGRV M  IE T+ YL  +G  P T+
Sbjct:   30 TIHSPSMEVGKVKKPFTPPREVHVQVTHSLAPEKREIFNSLNNWAQENILVLLKDVDKCWQPSDFLPDSAS--EGFDEQVMELRKRCKEIPDDYFIVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPRTE 209          

HSP 2 Score: 22.7126 bits (47), Expect = 1.858e-53
Identity = 7/13 (53.85%), Postives = 9/13 (69.23%), Query Frame = 3
Query:  660 PREQKKPYRGFVY 698
            PR +  PY GF+Y
Sbjct:  206 PRTENNPYLGFIY 218          
BLAST of DY259954 vs. ExPASy Swiss-Prot
Match: STAD_HELAN (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.157e-53
Identity = 104/184 (56.52%), Postives = 126/184 (68.48%), Query Frame = 2
Query:  140 TAASSTVRFRQISAVAAPPKPK----THSMPPEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRPGDLLKSFLDLSGRVHMLLIENTVPYLNSAGWTPGTKKT 679
            T  S+T +         PP+       HSMPP+K+E+FKS+E WA NN+L  LKPVEKCWQ QDFLPDP      F +QV  LR R   +PDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGA+     +W R+WTAEENR GDLL  +L LSGRV M  I+ T+ YL  +G  P T+ +
Sbjct:   36 TIGSATTKVESTKKPFTPPREVHQQVLHSMPPQKIEIFKSMEGWAENNILVHLKPVEKCWQAQDFLPDPAS--DGFMEQVEELRARAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGATLLLGLVWTRAWTAEENRHGDLLHQYLYLSGRVDMRQIQKTIQYLIGSGMDPRTENS 217          

HSP 2 Score: 22.7126 bits (47), Expect = 3.157e-53
Identity = 7/13 (53.85%), Postives = 9/13 (69.23%), Query Frame = 3
Query:  660 PREQKKPYRGFVY 698
            PR +  PY GF+Y
Sbjct:  212 PRTENSPYLGFIY 224          
BLAST of DY259954 vs. ExPASy Swiss-Prot
Match: STAD_LINUS (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Linum usitatissimum PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 6.222e-48
Identity = 98/153 (64.05%), Postives = 112/153 (73.20%), Query Frame = 2
Query:  218 PPEKVEVFKSLETWATNNVL-PLLKPVEKCWQPQDFLPDPTLPFSDFTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRPGDLLKSFLDLSGRVHMLLIENTVPYLNSAGWTPGTK 673
            P    E+FKSL      +VL   LKPVEKCWQPQDFLP+P      F +QV+ LR R   LPDDYFVVLVGDMITE+A+PTYQTM+NTLDGVRDETGAS +PWAIW R+WTAEENR GDLL  +L LSGRV M  IE T+ YL  +G  P T+
Sbjct:   65 PTGSWEIFKSLGRLGLRDVLISHLKPVEKCWQPQDFLPEPES--DGFEEQVKELRARAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPKTE 215          

HSP 2 Score: 21.557 bits (44), Expect = 6.222e-48
Identity = 6/13 (46.15%), Postives = 9/13 (69.23%), Query Frame = 3
Query:  660 PREQKKPYRGFVY 698
            P+ +  PY GF+Y
Sbjct:  212 PKTENNPYLGFIY 224          
BLAST of DY259954 vs. ExPASy Swiss-Prot
Match: STAD_CORSA (Omega-12 acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Coriandrum sativum PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 2.340e-45
Identity = 89/152 (58.55%), Postives = 111/152 (73.03%), Query Frame = 2
Query:  221 PEKVEVFKSLETWATNNVLPLLKPVEKCWQPQDFLPDPTLPFSD-FTDQVRALRERTAGLPDDYFVVLVGDMITEDAIPTYQTMINTLDGVRDETGASSSPWAIWNRSWTAEENRPGDLLKSFLDLSGRVHMLLIENTVPYLNSAGWTPGTK 673
            PE  E+F SLE WA +N+L  LK VE  WQPQD+LPDPT   SD F DQV+ +RER   +PD+YFVVLVGDMITE+A+PTY +M+N  DG++D+TGA  + WA W R+WTAEENR GDLL  +L LSGRV M +IE T+ YL  +G    T+
Sbjct:   55 PEVDELFNSLEGWARDNILVHLKSVENSWQPQDYLPDPT---SDAFEDQVKEMRERAKDIPDEYFVVLVGDMITEEALPTYMSMLNRCDGIKDDTGAQPTSWATWTRAWTAEENRHGDLLNKYLYLSGRVDMRMIEKTIQYLIGSGMDTKTE 203          
The following BLAST results are available for this feature:
BLAST of DY259954 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
STAD_ORYSJ1.462e-5552.15Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_SPIOL1.571e-5558.01Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STADS_BRANA4.538e-5567.10Acyl-[acyl-carrier-protein] desaturase, seed speci... [more]
STAD_OLEEU1.858e-5357.14Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_HELAN3.157e-5356.52Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_LINUS6.222e-4864.05Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_CORSA2.340e-4558.55Omega-12 acyl-[acyl-carrier-protein] desaturase, c... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YM03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259954 ID=DY259954; Name=DY259954; organism=Citrus clementina; type=EST; length=975bp
CAAAATCAGTTCTAGAGAAAGACGCACACTCCCTGTGCTAAGTGCCACCA
CCATGCAAGCATCTCAGTTTCTCGTCACTTCCACCAAACGTCCTGCTGCG
TGCTCTCCACTTGTCCCTAATCCCGCCCACCATCGTCTCACCGCCGCATC
CTCCACCGTCCGATTCCGGCAAATCTCCGCCGTCGCAGCACCACCGAAAC
CAAAAACACATTCAATGCCACCCGAAAAAGTCGAAGTCTTCAAGTCACTA
GAAACCTGGGCCACCAATAACGTGTTACCATTACTCAAACCAGTAGAGAA
ATGCTGGCAGCCCCAAGACTTCTTACCCGATCCGACGCTGCCTTTTTCGG
ACTTCACTGACCAAGTCAGGGCCCTACGTGAACGCACTGCGGGGCTACCT
GACGATTACTTTGTTGTGCTGGTGGGTGACATGATCACTGAAGACGCCAT
TCCCACTTATCAGACGATGATTAATACGCTTGATGGTGTCAGAGATGAGA
CCGGTGCAAGTTCCAGCCCATGGGCTATTTGGAACCGCTCCTGGACTGCT
GAGGAAAACCGCCCTGGAGATTTGCTCAAGAGCTTCCTTGATTTGTCGGG
TCGGGTCCATATGCTCCTGATTGAGAACACTGTCCCGTATCTAAACAGTG
CTGGCTGGACCCCGGGAACAAAAAAAACCCTACCGCGGCTTTGTTTACCC
TCCTTAAAAAAACGCACCATTTAATACCCACCGCAAACCCCCCCCCCCCT
GGCACAACAAGGACACGAACCCAGCCTCCCCCCCAACACTAAACCCTTAA
TCCTACAAAAAATCACCCCCAAATATCCCTTCCCTAGTCCCTAACATTGC
TTCCTCACAAGCAAACCACAACCAAGACTGATACCTAACCAAAACAGGAA
AAAGCACCACCCGCAAACACCTACACAAAAAAACCAAATCACAAAACACA
CCAAGTATGTGCAAATTCCAACAAC
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