DY259957

Overview
NameDY259957
Unique NameDY259957
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1082
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY259957 vs. ExPASy Swiss-Prot
Match: ABCB9_HUMAN (ATP-binding cassette sub-family B member 9 OS=Homo sapiens GN=ABCB9 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.573e-11
Identity = 47/178 (26.40%), Postives = 87/178 (48.88%), Query Frame = 3 
Query:  249 RKRNDASENGNVTDLEH--GDAVP----AANVGFGRVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTETPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVAPLRKNLFSHLINQEIAFYDVTRTGDLPNQLSEDTPNIKNAATTNLSEALKN 764
            R    A E G  T+ E   G   P    A+     ++L+  KPD   L+ A+  L++A++    +P + G+ ID +           +++    + ++ + L+ I  S    +R  +F+    R+   LR  LF  L++QE +F+D  RTGDL ++L+ DT  + +  + N++  L+N
Sbjct:  141 RPGTQALEPGAATEAEGFPGSGRPPPEQASGATLQKLLSYTKPDVAFLVAASFFLIVAALGETFLPYYTGRAIDGIVIQ--------KSMDQFSTAVVIVCLLAIGSSFAAGIRGGIFTLIFARLNIRLRNCLFRSLVSQETSFFDENRTGDLISRLTSDTTMVSDLVSQNINVFLRN 310
[Close]
BLAST of DY259957 vs. ExPASy Swiss-Prot
Match: MDL1_CANAL (ATP-dependent permease MDL1 OS=Candida albicans GN=MDL1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.486e-11
Identity = 46/170 (27.06%), Postives = 83/170 (48.82%), Query Frame = 3 
Query:  336 RVLALAKPDAGKLIIATVALLIASVSSILIPKFGGKIIDIVSGDTE-------------TPEQKAEALAAVRSTILSIFLIVIVGSVCTALRAWLFSSASERVVAPLRKNLFSHLINQEIAFYDV------TRTGDLPNQLSEDTPNIKNAATTNLSEALKNLSTAFIGL 788
            ++L LAKP++  +  A + L+  S +S+ +P   GKIID    D +              P  K            ++ ++ IV +     R +L  S  ER+VA LR  LFS ++ Q+  F+D+       +TGDL ++++ DT  I  + + N+S+ ++ + +  +GL
Sbjct:   85 KLLRLAKPESKLIFFALICLVTTSATSMALPLMIGKIIDTTKKDDDDDKDNDNDDKDDTQPSDKLIFGLPQPQFYSALGVLFIVSASTNFGRIYLLRSVGERLVARLRSRLFSKILAQDAYFFDLGPSKTGMKTGDLISRIASDTQIISKSLSMNISDGIRAIISGCVGL 254
The following BLAST results are available for this feature:
BLAST of DY259957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
ABCB9_HUMAN2.573e-1126.40ATP-binding cassette sub-family B member 9 OS=Homo... [more]
MDL1_CANAL7.486e-1127.06ATP-dependent permease MDL1 OS=Candida albicans GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YM08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259957 ID=DY259957; Name=DY259957; organism=Citrus clementina; type=EST; length=1082bp
CACACACACACGCACGCACACGTTCTCTTGGAACTTATTGAAACTAAACA
TTGTACAAAAACATTACATCTTCCAATAAGTACTCATTTGAGCCGTGAAC
TTGTATAGTTTAGTGTTTTTACTTTGGTAGGAGGATTCACAAGTGAAATA
AGCTTTTGATGGGCAAGTTTTCAGGGATGCATGGCTTTGGTGGCGGCGGT
GGTGGCGGTGGCGGTGAAAGAGCCCCTTTGTTAGATCACGGTGGGAGGAG
GAAGAGAAATGATGCATCAGAAAATGGTAACGTGACCGACCTTGAGCATG
GGGATGCAGTTCCGGCTGCGAACGTGGGGTTTGGTAGAGTACTGGCACTT
GCAAAGCCTGATGCAGGGAAACTGATAATTGCTACAGTTGCTCTCTTGAT
TGCATCTGTGTCAAGTATATTGATTCCAAAATTTGGTGGGAAAATAATAG
ACATTGTGTCAGGAGATACTGAAACGCCTGAACAGAAGGCTGAAGCTTTA
GCTGCAGTCAGGAGCACCATCCTCAGTATCTTTCTGATTGTTATAGTCGG
TTCAGTTTGTACCGCACTACGAGCATGGTTATTTTCTTCTGCAAGTGAAA
GGGTTGTTGCTCCATTGAGAAAGAATTTGTTTAGTCACCTTATTAACCAA
GAAATAGCTTTCTATGATGTTACACGAACAGGGGACCTTCCTAACCAGCT
ATCTGAAGATACCCCGAATATAAAAAATGCTGCCACCACCAATCTCTCAG
AGGCACTTAAAAACCTATCAACTGCTTTTATTGGCCTTGGCTTTCCTGGT
TGCCACCTTCATGGAAGTTAACTTTGCCTGGCCCCTGGTTGGTTGGGGCC
GGCCCTTTCTCCTCCCGGACACTAATTTTTGGTCCTTTCCTTCCTGGAAC
TTTTCCCCCCCAAACCTCTGCCCGCCGCCTCGCACATTCTCTTCTCATTG
CCTGAAGGGAACCCTTTTGGCCCCCTCTACACACCTGCGCAATCTCTTCT
TCCTAAGGCAAACAAAGCAACATTCCCCGGCACGATCGCGCAAAAGGTGA
TAAGACAAATTCTAACACCCTTCGCCCCTCCC
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