DY259964

Overview
NameDY259964
Unique NameDY259964
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP2M1_MOUSE (AP-2 complex subunit mu OS=Mus musculus GN=Ap2m1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.499e-24
Identity = 67/220 (30.45%), Postives = 109/220 (49.55%), Query Frame = 1
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGR----------KREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFDVEGLCPWFPRTVNF---WYGTTNDPGILTSFSFNPWGEKAG 621
            +++ NFVL+YELLDE++DFGY Q + T  LK++                    I  QG K    T   +S + ++  G+          +R E+F+D++E +++  S  G +L++ + G + MKSYL+G PE +  +ND ++I K  +   D  S +G  ++ +D+   H+ VRL  FD E    + P    F    Y TT D  I+  F   P   + G
Sbjct:  100 NIKNNFVLIYELLDEILDFGYPQNSETGALKTF--------------------ITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKD--IILPFRVIPLVREVG 297          
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP2M1_MACFA (AP-2 complex subunit mu-1 OS=Macaca fascicularis GN=AP2M1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.499e-24
Identity = 67/220 (30.45%), Postives = 109/220 (49.55%), Query Frame = 1
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGR----------KREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFDVEGLCPWFPRTVNF---WYGTTNDPGILTSFSFNPWGEKAG 621
            +++ NFVL+YELLDE++DFGY Q + T  LK++                    I  QG K    T   +S + ++  G+          +R E+F+D++E +++  S  G +L++ + G + MKSYL+G PE +  +ND ++I K  +   D  S +G  ++ +D+   H+ VRL  FD E    + P    F    Y TT D  I+  F   P   + G
Sbjct:  100 NIKNNFVLIYELLDEILDFGYPQNSETGALKTF--------------------ITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKD--IILPFRVIPLVREVG 297          
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP2M1_HUMAN (AP-2 complex subunit mu OS=Homo sapiens GN=AP2M1 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.499e-24
Identity = 67/220 (30.45%), Postives = 109/220 (49.55%), Query Frame = 1
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGR----------KREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFDVEGLCPWFPRTVNF---WYGTTNDPGILTSFSFNPWGEKAG 621
            +++ NFVL+YELLDE++DFGY Q + T  LK++                    I  QG K    T   +S + ++  G+          +R E+F+D++E +++  S  G +L++ + G + MKSYL+G PE +  +ND ++I K  +   D  S +G  ++ +D+   H+ VRL  FD E    + P    F    Y TT D  I+  F   P   + G
Sbjct:  100 NIKNNFVLIYELLDEILDFGYPQNSETGALKTF--------------------ITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKD--IILPFRVIPLVREVG 297          
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP2M1_BOVIN (AP-2 complex subunit mu OS=Bos taurus GN=AP2M1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.499e-24
Identity = 67/220 (30.45%), Postives = 109/220 (49.55%), Query Frame = 1
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGR----------KREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFDVEGLCPWFPRTVNF---WYGTTNDPGILTSFSFNPWGEKAG 621
            +++ NFVL+YELLDE++DFGY Q + T  LK++                    I  QG K    T   +S + ++  G+          +R E+F+D++E +++  S  G +L++ + G + MKSYL+G PE +  +ND ++I K  +   D  S +G  ++ +D+   H+ VRL  FD E    + P    F    Y TT D  I+  F   P   + G
Sbjct:  100 NIKNNFVLIYELLDEILDFGYPQNSETGALKTF--------------------ITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKD--IILPFRVIPLVREVG 297          
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP1M_CAEEL (AP-1 complex subunit mu-1-I OS=Caenorhabditis elegans GN=unc-101 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.613e-24
Identity = 68/180 (37.78%), Postives = 103/180 (57.22%), Query Frame = 1
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGRKRE-EIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLI-GKGRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFDVEGLCPWFP 534
            S+R NFV++YELLDE++DFG+ QTT + +L+ Y+  E         Q L  A          P  AVT +V     G + R+ E+F+D+IE +++  S++G +L SEI G+++M+ YLTG PE+RL LND +L  G GR           S +V L+++  H+ VRL  FD +    + P
Sbjct:  102 SVRDNFVVIYELLDEMMDFGFPQTTESRILQEYITQEG--------QKLISAP--------RPPMAVTNAVSWRSEGIKYRKNEVFLDVIESVNMLASANGTVLQSEIVGSVKMRVYLTGMPELRLGLNDKVLFEGSGRGK---------SKSVELEDVKFHQCVRLSRFDTDRTISFIP 256          

HSP 2 Score: 24.2534 bits (51), Expect = 3.613e-24
Identity = 8/18 (44.44%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  513 RTLSLVPPNGEFLVWNYQ 566
            RT+S +PP+G F + +Y+
Sbjct:  250 RTISFIPPDGAFELMSYR 267          
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP2M1_XENLA (AP-2 complex subunit mu-1 OS=Xenopus laevis GN=ap2m1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.795e-24
Identity = 66/220 (30.00%), Postives = 108/220 (49.09%), Query Frame = 1
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGR----------KREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFDVEGLCPWFPRTVNF---WYGTTNDPGILTSFSFNPWGEKAG 621
            +++ NFVL+YELLDE++DFGY Q + T  LK++                    I  QG K    T   +S + ++  G+          +R E+F+D++E +++  S  G +L++ + G + MKSYL+G PE +  +ND ++I K  +   D    TG  ++ +D+   H+ VRL  FD E    + P    +    Y TT D  I+  F   P   + G
Sbjct:  100 NIKNNFVLIYELLDEILDFGYPQNSETGALKTF--------------------ITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETGKTGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEYELMRYRTTKD--IILPFRVIPLVREVG 297          
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP2M1_CHICK (AP-2 complex subunit mu-1 OS=Gallus gallus GN=AP2M1 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 64/210 (30.48%), Postives = 105/210 (50.00%), Query Frame = 1
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFDVEGLCPWFPRTVNF---WYGTTNDPGILTSFSFNPWGEKAG 621
            +++ NFVL+YELLDE++DFGY Q + T  LK+++  + I       Q    + +  Q   R  G               +R E+F+D++E +++  S  G +L++ + G + MKSYL+G PE +  +ND ++I K  +   D    +G  ++ +D+   H+ VRL  FD E    + P    F    Y TT D  I+  F   P   + G
Sbjct:  100 NIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQTKEEQSQITSQVTGQIGWRREGIKY------------RRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETGKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKD--IILPFRVIPLVREVG 295          
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP1M2_HUMAN (AP-1 complex subunit mu-2 OS=Homo sapiens GN=AP1M2 PE=1 SV=4)

HSP 1 Score: 110.153 bits (274), Expect = 1.330e-23
Identity = 63/184 (34.24%), Postives = 108/184 (58.70%), Query Frame = 1
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGR-KREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFDVEGLCPWFPRTVNF 549
            S+R NFV+VYELLDE++DFG+ QTT +++L+ Y+  +   ++               G  R+P T VT +V     G + K+ E+F+D+IE +++  +++G +L SEI GTI++K +L+G PE+RL LND        R +++    + + +V L+++  H+ VRL  FD +    + P   +F
Sbjct:  102 SIRDNFVIVYELLDELMDFGFPQTTDSKILQEYITQQSNKLET--------------GKSRVPPT-VTNAVSWRSEGIKYKKNEVFIDVIESVNLLVNANGSVLLSEIVGTIKLKVFLSGMPELRLGLND--------RVLFELTGRSKNKSVELEDVKFHQCVRLSRFDNDRTISFIPPDGDF 262          
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP1M_DICDI (AP-1 complex subunit mu OS=Dictyostelium discoideum GN=apm1 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.348e-23
Identity = 61/178 (34.27%), Postives = 101/178 (56.74%), Query Frame = 1
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFDVEGLCPWFP 534
            S+R NFV++YEL+DE++DFGY Q+T  ++L+ Y+  E   ++      + PAAI    + R  G    K+            E+F+D++E I++  S++G +L SEI G ++MKS L+G PE+RL LND +L     ++     +  G G V L+++  H+ VRL  F+ +    + P
Sbjct:  101 SIRDNFVVIYELMDEMMDFGYPQSTEPKILQEYITQEGYKLERGARGMVLPAAITGAVSWRKEGIKYNKN------------EVFLDVVESINLLVSANGTVLRSEIVGAVKMKSKLSGMPELRLGLNDKILFENSAKT----GAPKGKG-VELEDVKFHQCVRLSKFENDRTISFIP 261          

HSP 2 Score: 26.5646 bits (57), Expect = 1.348e-23
Identity = 9/18 (50.00%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  513 RTLSLVPPNGEFLVWNYQ 566
            RT+S +PP+GEF + +Y+
Sbjct:  255 RTISFIPPDGEFELMSYR 272          
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP2M1_PONAB (AP-2 complex subunit mu OS=Pongo abelii GN=AP2M1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.962e-23
Identity = 66/220 (30.00%), Postives = 108/220 (49.09%), Query Frame = 1
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGR----------KREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFDVEGLCPWFPRTVNF---WYGTTNDPGILTSFSFNPWGEKAG 621
            +++ NFVL+YELLDE++DFGY Q + T  LK++                    I  QG K    T   +S + ++  G+          +R E+F+D++E +++  S  G +L++ + G + MKSYL+G PE +  +ND ++I K  +   D  S +G  ++ +D+   H+ VRL   D E    + P    F    Y TT D  I+  F   P   + G
Sbjct:  100 NIKNNFVLIYELLDEILDFGYPQNSETGALKTF--------------------ITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKSDSERSISFIPPDGEFELMRYRTTKD--IILPFRVIPLVREVG 297          
The following BLAST results are available for this feature:
BLAST of DY259964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
AP2M1_MOUSE3.499e-2430.45AP-2 complex subunit mu OS=Mus musculus GN=Ap2m1 P... [more]
AP2M1_MACFA3.499e-2430.45AP-2 complex subunit mu-1 OS=Macaca fascicularis G... [more]
AP2M1_HUMAN3.499e-2430.45AP-2 complex subunit mu OS=Homo sapiens GN=AP2M1 P... [more]
AP2M1_BOVIN3.499e-2430.45AP-2 complex subunit mu OS=Bos taurus GN=AP2M1 PE=... [more]
AP1M_CAEEL3.613e-2437.78AP-1 complex subunit mu-1-I OS=Caenorhabditis eleg... [more]
AP2M1_XENLA7.795e-2430.00AP-2 complex subunit mu-1 OS=Xenopus laevis GN=ap2... [more]
AP2M1_CHICK1.330e-2330.48AP-2 complex subunit mu-1 OS=Gallus gallus GN=AP2M... [more]
AP1M2_HUMAN1.330e-2334.24AP-1 complex subunit mu-2 OS=Homo sapiens GN=AP1M2... [more]
AP1M_DICDI1.348e-2334.27AP-1 complex subunit mu OS=Dictyostelium discoideu... [more]
AP2M1_PONAB2.962e-2330.00AP-2 complex subunit mu OS=Pongo abelii GN=AP2M1 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YM16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259964 ID=DY259964; Name=DY259964; organism=Citrus clementina; type=EST; length=765bp
TCACTTCGAAAGAACTTTGTGCTTGTCTATGAATTGCTTGATGAAGTCAT
CGATTTTGGTTATGTGCAAACAACGTCTACTGAAGTGTTGAAGTCCTATG
TATTTAATGAGCCAATTGTGGTTGATGCTGTACGCCTGCAACCGCTAAGC
CCTGCTGCTATTTTTATGCAAGGGACCAAACGAATGCCAGGAACAGCTGT
AACTAAATCTGTTGTGGCGAATGAGCCTGGAGGTAGGAAGAGAGAAGAAA
TTTTTGTGGATATTATTGAGAAAATTAGCGTGACATTCAGCTCAAGTGGA
TATATTCTGACTTCTGAGATTGATGGCACCATTCAAATGAAGAGCTACCT
CACTGGAAACCCGGAAATACGTTTGGCTCTTAATGATGACCTGCTCATTG
GGAAAGGCAGAAGATCAATCTATGATTACAGAAGTTCAACTGGGTCAGGA
GCTGTGGTACTTGATGAATTGAACCTTCATGAATCTGTACGTCTTGATAG
TTTTGATGTGGAAGGACTTTGTCCCTGGTTCCCCCGAACGGTGAATTTCT
GGTATGGAACTACCAATGACCCAGGAATTTTAACCTCTTTTTCTTTTAAT
CCTTGGGGTGAAAAAGCAGGACCCTTAGGGCGAAGTGGACATTAAAAAAA
TGGGGAATTTCCCCGCAAGCTTTATGGCACCCAATTTGTTGGAAAAATGG
GGCGGCCCAAATCACAAACAAAGAGGTTTTTGGGGTTGGAAACCGGGAGG
GTTGGGGAAAAAAAA
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