DY259964

Overview
NameDY259964
Unique NameDY259964
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP1M2_MOUSE (AP-1 complex subunit mu-2 OS=Mus musculus GN=Ap1m2 PE=1 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 3.868e-23
Identity = 62/184 (33.70%), Postives = 108/184 (58.70%), Query Frame = 1
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGR-KREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFDVEGLCPWFPRTVNF 549
            S+R NFV+VY+LLDE++DFG+ QTT +++L+ Y+  +   ++               G  R+P T VT +V     G + K+ E+F+D+IE +++  +++G +L SEI GTI++K +L+G PE+RL LND        R +++    + + +V L+++  H+ VRL  FD +    + P   +F
Sbjct:  102 SIRDNFVIVYDLLDELMDFGFPQTTDSKILQEYITQQGNKLET--------------GKSRVPPT-VTNAVSWRSEGIKYKKNEVFIDVIESVNLLVNANGSVLLSEIVGTIKLKVFLSGMPELRLGLND--------RVLFELTGRSKNKSVELEDVKFHQCVRLSRFDNDRTISFIPPDGDF 262          
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP1M2_BOVIN (AP-1 complex subunit mu-2 OS=Bos taurus GN=AP1M2 PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 5.052e-23
Identity = 62/184 (33.70%), Postives = 108/184 (58.70%), Query Frame = 1
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGR-KREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFDVEGLCPWFPRTVNF 549
            S+R NFV+VYELLDE++DFG+ QTT +++L+ Y+  +   ++               G  R+P T VT +V     G + K+ E+F+D+IE +++  +++G +L SEI G+I++K +L+G PE+RL LND        R +++    + + +V L+++  H+ VRL  FD +    + P   +F
Sbjct:  102 SIRDNFVIVYELLDELMDFGFPQTTDSKILQEYITQQGNKLET--------------GKSRVPPT-VTNAVSWRSEGIKYKKNEVFIDVIESVNLLVNANGSVLLSEIVGSIKLKVFLSGMPELRLGLND--------RVLFELTGRSKNKSVELEDVKFHQCVRLSRFDNDRTISFIPPDGDF 262          
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP2M_DICDI (AP-2 complex subunit mu OS=Dictyostelium discoideum GN=apm2 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 8.506e-23
Identity = 58/186 (31.18%), Postives = 101/186 (54.30%), Query Frame = 1
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVF---NEPIVVDAVRLQPLSPAAIFMQGTK--RMPGTAVTKSVVANEPGGRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGRRSIYDYRSSTG---SGAVVLDELNLHESVRLDSFDVEGLCPWFP 534
            S+R NFVLVYELLDE++DFGY Q  ST+VLK Y+     +   +D ++   +S   I   GT   R P                KR E+++D++E +++  S+ G IL +++ G + MK +L+G PE +  +ND +++ + + +     + +G   +  + +D++  H+ VRL  FD +    + P
Sbjct:   99 SIRNNFVLVYELLDEILDFGYPQNCSTDVLKLYITQGQGKLKSLDKLKQDKISKITIQATGTTPWRTPDIKY------------KRNELYIDVVESVNLLMSAEGNILRADVSGQVMMKCFLSGMPECKFGMNDKVIMDREKSTNGGSAARSGARRANGIEIDDITFHQCVRLGKFDSDRTVSFIP 272          

HSP 2 Score: 25.7942 bits (55), Expect = 8.506e-23
Identity = 9/18 (50.00%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  513 RTLSLVPPNGEFLVWNYQ 566
            RT+S +PP+GEF +  Y+
Sbjct:  266 RTVSFIPPDGEFELMRYR 283          
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP2MA_DANRE (AP-2 complex subunit mu-1-A OS=Danio rerio GN=ap2m1a PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 8.618e-23
Identity = 66/221 (29.86%), Postives = 109/221 (49.32%), Query Frame = 1
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGR----------KREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGK-GRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFDVEGLCPWFPRTVNF---WYGTTNDPGILTSFSFNPWGEKAG 621
            +++ NFVL+YELLDE++DFGY Q + T  LK++                    I  QG K    T   +S + ++  G+          +R E+F+D++E +++  S  G +L++ + G + MKSYL+G PE +  +ND ++I K G+    D    +G  ++ +D+   H+ VRL  FD E    + P    +    Y TT D  I+  F   P   + G
Sbjct:  100 NIKNNFVLIYELLDEILDFGYPQNSETGALKTF--------------------ITQQGIKGQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIDKQGKGGTTDDAGKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEYELMRYRTTKD--IILPFRVIPLVREVG 298          
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP2MB_DANRE (AP-2 complex subunit mu-1-B OS=Danio rerio GN=ap2m1b PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.126e-22
Identity = 64/212 (30.19%), Postives = 109/212 (51.42%), Query Frame = 1
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGR-KREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGK-GRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFDVEGLCPWFPRTVNF---WYGTTNDPGILTSFSFNPWGEKAG 621
            +++ NFVL+YELLDE++DFGY Q + T  LK+++  + I    +  +  S              + VT  +     G + +R E+F+D++E +++  S  G +L++ + G + MKSYL+G PE +  +ND ++I K G+    D    +G  ++ +D+   H+ VRL  FD E    + P    +    Y TT D  I+  F   P   + G
Sbjct:  100 NIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHLTKEEQSQIT-----------SQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIDKQGKGGTTDDTGKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEYELMRYRTTKD--IILPFRVIPLVREVG 298          
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP1M1_SCHPO (AP-1 complex subunit mu-1 OS=Schizosaccharomyces pombe GN=apm1 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.129e-22
Identity = 59/179 (32.96%), Postives = 97/179 (54.19%), Query Frame = 1
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGRKRE-EIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFDVEGLCPWFP 534
            S+R NFVLVYELLDE++DFG+ QTT T++L+ Y+      V      P+                A+T ++     G   R+ E+F+D+IE +++  ++ G ++ SEI G +++K YL+G PE+RL LND +L     R+I           V ++++  H+ VRL  F+ +    + P
Sbjct:  102 SIRDNFVLVYELLDEIMDFGFPQTTETKILQEYITQTSNTVKKHAPPPI----------------AMTNAISWRSEGIHYRKNEVFLDVIESVNLIAAADGTVIQSEILGKVRLKCYLSGMPELRLGLNDKVLFEAAGRTI-------KGNTVEMEDVKFHQCVRLARFENDRTISFIP 257          

HSP 2 Score: 26.1794 bits (56), Expect = 4.129e-22
Identity = 9/18 (50.00%), Postives = 15/18 (83.33%), Query Frame = 3
Query:  513 RTLSLVPPNGEFLVWNYQ 566
            RT+S +PP+GEF + +Y+
Sbjct:  251 RTISFIPPDGEFDLMSYR 268          
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP2M_CAEEL (AP-2 complex subunit mu OS=Caenorhabditis elegans GN=dpy-23 PE=2 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 8.066e-21
Identity = 57/194 (29.38%), Postives = 99/194 (51.03%), Query Frame = 1
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPI-VVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGKGRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFDVEGLCPWFPRTVNF---WYGTTND 570
            +++ NFVL+YELLDE++DFGY Q T   VLK+++  + +   DA       P  +  +   ++      +     E    +R E+F+D+IE +++  +  G +L++ + G + MKSYL+G PE +  +ND + I    +   D  +     AV +D+   H+ V+L  F+ E    + P    +    Y TT D
Sbjct:  100 NVKNNFVLIYELLDEILDFGYPQNTDPGVLKTFITQQGVRTADA-------PVPVTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVIEYVNLLMNQQGQVLSAHVAGKVAMKSYLSGMPECKFGINDKITIEGKSKPGSDDPNKASRAAVAIDDCQFHQCVKLTKFETEHAISFIPPDGEYELMRYRTTKD 286          
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP1M1_YEAST (AP-1 complex subunit mu-1-I OS=Saccharomyces cerevisiae GN=APM1 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.514e-17
Identity = 62/203 (30.54%), Postives = 100/203 (49.26%), Query Frame = 1
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPG-GRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLIGK----------------GRRSIYDYRSSTGSGA--------VVLDELNLHESVRLDSFDVEGLCPWFP 534
            S+R NFV++YELLDEV+D+G  Q T T++LK Y+  +           L  +A   +   R P  A+T SV     G   K+ E F+DI+E I++  +  G +L SEI G +++ S L+G P+++L +ND  +  K                   +  D + S  S +        + L++L  H+ VRL  F+ E +  + P
Sbjct:  103 SIRDNFVIIYELLDEVMDYGIPQITETKMLKQYITQKSF--------KLVKSAKKKRNATRPP-VALTNSVSWRPEGITHKKNEAFLDIVESINMLMTQKGQVLRSEIIGDVKVNSKLSGMPDLKLGINDKGIFSKYLDDDTNIPSASATTSDNNTETDKKPSITSSSATNKKKVNIELEDLKFHQCVRLSKFENEKIITFIP 296          

HSP 2 Score: 21.9422 bits (45), Expect = 1.514e-17
Identity = 6/18 (33.33%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  513 RTLSLVPPNGEFLVWNYQ 566
            + ++ +PP+G+F + NY+
Sbjct:  290 KIITFIPPDGKFDLMNYR 307          
BLAST of DY259964 vs. ExPASy Swiss-Prot
Match: AP2M_SCHPO (AP-2 complex subunit mu OS=Schizosaccharomyces pombe GN=apm4 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.740e-15
Identity = 54/187 (28.88%), Postives = 98/187 (52.41%), Query Frame = 1
Query:    1 SLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVV--DAVRLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGRKREE-IFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNDDLLI------GKGRRSIYDYRSSTGSGAVVLDELNLHESVRLDSFDVEGLCPWFP 534
            +++ N   ++ELLDE+ID+G +QTT  + L   V    +    +A+ L+    + +    +  +PG     SV     G + R+  I++DI+E++++  SS+G +L S++ G ++M++ L+G PE +  LND L         K + +     SS   G V+L++   H+ VRL  F+ E    + P
Sbjct:   99 TVKDNVSFIFELLDEMIDYGIIQTTEPDALARSVSITAVKKKGNALSLKRSHSSQLAHTTSSEIPG-----SVPWRRAGIKYRKNSIYIDIVERMNLLISSTGNVLRSDVSGVVKMRAMLSGMPECQFGLNDKLDFKLKQSESKSKSNNSRNPSSVNGGFVILEDCQFHQCVRLPEFENEHRITFIP 280          
The following BLAST results are available for this feature:
BLAST of DY259964 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
AP1M2_MOUSE3.868e-2333.70AP-1 complex subunit mu-2 OS=Mus musculus GN=Ap1m2... [more]
AP1M2_BOVIN5.052e-2333.70AP-1 complex subunit mu-2 OS=Bos taurus GN=AP1M2 P... [more]
AP2M_DICDI8.506e-2331.18AP-2 complex subunit mu OS=Dictyostelium discoideu... [more]
AP2MA_DANRE8.618e-2329.86AP-2 complex subunit mu-1-A OS=Danio rerio GN=ap2m... [more]
AP2MB_DANRE1.126e-2230.19AP-2 complex subunit mu-1-B OS=Danio rerio GN=ap2m... [more]
AP1M1_SCHPO4.129e-2232.96AP-1 complex subunit mu-1 OS=Schizosaccharomyces p... [more]
AP2M_CAEEL8.066e-2129.38AP-2 complex subunit mu OS=Caenorhabditis elegans ... [more]
AP1M1_YEAST1.514e-1730.54AP-1 complex subunit mu-1-I OS=Saccharomyces cerev... [more]
AP2M_SCHPO1.740e-1528.88AP-2 complex subunit mu OS=Schizosaccharomyces pom... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YM16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259964 ID=DY259964; Name=DY259964; organism=Citrus clementina; type=EST; length=765bp
TCACTTCGAAAGAACTTTGTGCTTGTCTATGAATTGCTTGATGAAGTCAT
CGATTTTGGTTATGTGCAAACAACGTCTACTGAAGTGTTGAAGTCCTATG
TATTTAATGAGCCAATTGTGGTTGATGCTGTACGCCTGCAACCGCTAAGC
CCTGCTGCTATTTTTATGCAAGGGACCAAACGAATGCCAGGAACAGCTGT
AACTAAATCTGTTGTGGCGAATGAGCCTGGAGGTAGGAAGAGAGAAGAAA
TTTTTGTGGATATTATTGAGAAAATTAGCGTGACATTCAGCTCAAGTGGA
TATATTCTGACTTCTGAGATTGATGGCACCATTCAAATGAAGAGCTACCT
CACTGGAAACCCGGAAATACGTTTGGCTCTTAATGATGACCTGCTCATTG
GGAAAGGCAGAAGATCAATCTATGATTACAGAAGTTCAACTGGGTCAGGA
GCTGTGGTACTTGATGAATTGAACCTTCATGAATCTGTACGTCTTGATAG
TTTTGATGTGGAAGGACTTTGTCCCTGGTTCCCCCGAACGGTGAATTTCT
GGTATGGAACTACCAATGACCCAGGAATTTTAACCTCTTTTTCTTTTAAT
CCTTGGGGTGAAAAAGCAGGACCCTTAGGGCGAAGTGGACATTAAAAAAA
TGGGGAATTTCCCCGCAAGCTTTATGGCACCCAATTTGTTGGAAAAATGG
GGCGGCCCAAATCACAAACAAAGAGGTTTTTGGGGTTGGAAACCGGGAGG
GTTGGGGAAAAAAAA
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