DY259966

Overview
NameDY259966
Unique NameDY259966
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1019
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: SEC4_CANGA (Ras-related protein SEC4 OS=Candida glabrata GN=SEC4 PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 8.261e-49
Identity = 99/207 (47.83%), Postives = 139/207 (67.15%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFKSEPQTIKINQPNTGASGAPA-------AQKSACC 715
            ++K+LLIGDSGVGKSCLL+R                  KI+T++++GK++KLQ+WDTAGQERFRTITTAYYRGAMGI+LVYDVTDE +F NI+ W + + +HA+D    +LVGNK+DMD   R V   +G+ALA E G+ F E+SAK + NV E+FF++A+ I++++  +         K++ PN+G  G  +       + KS CC
Sbjct:   20 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFANIKQWFKTVNEHANDEAQLLLVGNKSDMD--TRVVTYEQGEALAKELGLPFIESSAKNDDNVNEIFFTLARLIQEKIDSN---------KLSGPNSGKDGNISINANKGDSSKSNCC 215          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.403e-48
Identity = 102/200 (51.00%), Postives = 129/200 (64.50%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFKSEPQTIKINQPNTGASGAPAAQKSACC 715
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK +KLQIWDTAGQERFRTIT++YYRGA GI +VYDVTD  SFNN++ W++ I+++A++ VNK+LVGNK+DM + K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A+ IK+R+  S   +  +      P  G S         CC
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDMTD-KKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQIKERMGSSIATNNTKASVNVSPGHGVSN---NSSGGCC 203          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB1B_BOVIN (Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 2.403e-48
Identity = 101/200 (50.50%), Postives = 129/200 (64.50%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFKSEPQTIKINQPNTGASGAPAAQKSACC 715
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+               +PN      P  Q    C
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGG------ERPNLKIDSTPVKQAGGGC 200          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 3.139e-48
Identity = 100/202 (49.50%), Postives = 135/202 (66.83%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFKSE--PQTIKINQPNTGASGAPAAQKSACC 715
            L KLLLIGDSGVGKSCLLLR                  KIRT EL+GK +KLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ SFNN++ W++ I+++A + VN++LVGNK+DM + K+ V  S  +  AD   I F ETSAK + NVE+ F ++++ IK+R+  + F S     ++K+ Q      G   +Q S+ C
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVD-KKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKERMGNNTFASSNAKSSVKVGQ------GTNVSQSSSNC 202          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB1B_RAT (Ras-related protein Rab-1B OS=Rattus norvegicus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.100e-48
Identity = 101/192 (52.60%), Postives = 132/192 (68.75%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFK-SEPQTIKINQ-PNTGASG 685
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRT+T++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  +  AD  G+ F ETSAK   NVE+ F ++A +IK+R+        E   +KI+  P   ASG
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTVTSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKIDSTPVKSASG 198          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB1B_PONAB (Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1B PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.100e-48
Identity = 96/167 (57.49%), Postives = 123/167 (73.65%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRL 616
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 173          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB1B_HUMAN (Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1B PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.100e-48
Identity = 96/167 (57.49%), Postives = 123/167 (73.65%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRL 616
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 173          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 191.815 bits (486), Expect = 5.354e-48
Identity = 101/200 (50.50%), Postives = 130/200 (65.00%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFKSEPQTIKINQPNTGASGAPAAQKSACC 715
            L KLLLIGDS VGKSC LLR                  KIRT+E++GK +KLQIWDTAGQERFRTIT++YYRGA GI++VYD+TD  SFNN++ W+  I+++A+D+V K+LVGNK D+ E+ RAV TS  QA A E GI F ETSAK ++NVEE F +++  IK+  A S    E +   + Q           + S CC
Sbjct:    8 LFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAEN-RAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMSAAIKKSKAGSQAALERKPSNVVQMKGRPIQQEQQKSSRCC 206          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB1B_MOUSE (Ras-related protein Rab-1B OS=Mus musculus GN=Rab1b PE=1 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 5.354e-48
Identity = 95/167 (56.89%), Postives = 123/167 (73.65%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRL 616
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  +  AD  G+ F ETSAK   NVE+ F ++A +IK+R+
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGVPFLETSAKNATNVEQAFMTMAAEIKKRM 173          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 6.993e-48
Identity = 96/167 (57.49%), Postives = 122/167 (73.05%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRL 616
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD  S+ N++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 173          
The following BLAST results are available for this feature:
BLAST of DY259966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SEC4_CANGA8.261e-4947.83Ras-related protein SEC4 OS=Candida glabrata GN=SE... [more]
YPT1_NEUCR2.403e-4851.00GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
RAB1B_BOVIN2.403e-4850.50Ras-related protein Rab-1B OS=Bos taurus GN=RAB1B ... [more]
YPT1_SCHPO3.139e-4849.50GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
RAB1B_RAT4.100e-4852.60Ras-related protein Rab-1B OS=Rattus norvegicus GN... [more]
RAB1B_PONAB4.100e-4857.49Ras-related protein Rab-1B OS=Pongo abelii GN=RAB1... [more]
RAB1B_HUMAN4.100e-4857.49Ras-related protein Rab-1B OS=Homo sapiens GN=RAB1... [more]
YPTM1_MAIZE5.354e-4850.50GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RAB1B_MOUSE5.354e-4856.89Ras-related protein Rab-1B OS=Mus musculus GN=Rab1... [more]
RAB1B_MACFA6.993e-4857.49Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YM18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259966 ID=DY259966; Name=DY259966; organism=Citrus clementina; type=EST; length=1019bp
CGGCGACTTGTTAATTCTTCTCACCCTTACAGTTTCAGAAAGAGAGTAAT
TGATTTGTTGTGAGAGAGAAGAGATGGCTGCACCACCAGCGAGGGCACGT
GCTGATTATGATTACCTCATCAAGCTTCTTTTGATCGGTGACAGCGGTGT
GGGGAAGAGTTGTTTGCTTCTGCGATTTTCAGACGGTTCCTTCACAACCA
GTTTTATTACTACTATTGGCATTGATTTTAAGATAAGAACCATCGAGCTT
GATGGAAAACGGATTAAATTGCAAATTTGGGATACAGCTGGTCAGGAACG
GTTTCGAACCATCACAACAGCTTACTACCGTGGAGCCATGGGGATTTTGC
TGGTGTATGATGTTACTGACGAGTCATCTTTCAACAATATTAGGAACTGG
ATTCGCAACATTGAACAGCATGCTTCTGACAATGTCAACAAGATACTTGT
TGGGAACAAGGCTGACATGGATGAGAGCAAAAGGGCTGTGCCTACTTCAA
AGGGTCAAGCACTTGCTGATGAGTATGGTATCAAGTTCTTTGAAACTAGT
GCAAAAACTAATTTGAATGTGGAGGAGGTTTTCTTTTCAATTGCCAAGGA
TATCAAGCAAAGACTTGCCGAATCAGATTTCAAATCCGAGCCTCAGACAA
TTAAAATTAACCAACCCAATACCGGAGCCAGTGGCGCCCCAGCTGCCCAA
AAGTCAGCTTGCTGTGGCGGTACCTAAACCAAATCCCAATTAGGTCGGGG
GGAAAAGATTCGGCCAAAGGCGAGCATTCCGTTGGTCAACCAATCCTTGT
TGACATTTATGAGGGAGCCTGGTATTTATCCCCCGGTCCTTTTTTCCCCA
CCCACCCCATTTCCTAACACGCCAAAGGGCACCCCTTCTCCCAGCCCATT
CCGGAAACCTAGAAAATGGACCCCCTCTTTCCCATGCCGCCGCACCCCCA
CCCCCCCCCCACCACTCCCCACGGTCCTCTAAGTAACACACACACATTCC
AACTCCTCTACCTTTCACC
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