DY259966

Overview
NameDY259966
Unique NameDY259966
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1019
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.558e-47
Identity = 102/205 (49.76%), Postives = 130/205 (63.41%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDF-----KSEPQTIKINQPNTGASGAPAAQKSACC 715
            ++KLLL+GDSGVGKSCLLLR                  KIRTIE  GKRIKLQ+WDTAGQERFRTITTAYYRGAMGI+L+YDVTD  SF N+ NW + + QHA+++    LVGNK D DE  R V   +GQ LA +  + F E SAK+N NV+ +F+ +A  I+++  E +       S    I ++Q N+GA       K+ CC
Sbjct:   14 IMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCD-DEVNRQVSKEQGQELAAKLNVPFLEASAKSNENVDSIFYELASIIQEKHVEENIGGVGGASGAGGIDVSQNNSGA-------KNNCC 210          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 2.657e-47
Identity = 100/200 (50.00%), Postives = 128/200 (64.00%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFKSEPQTIKINQPNTGASGAPAAQKSACC 715
            L KLLLIGDSGVGKSCLLLR                  KIRTIELDGK IKLQIWDTAGQER RTIT++YYRGA GI++VYDVTD+ S+ N++ W++ I+++AS+NVNK+LVGNK+D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+R+               +PN      P  Q    C
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGG------ERPNLKIDSTPVKQAGGGC 200          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 1.010e-46
Identity = 94/167 (56.29%), Postives = 121/167 (72.46%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRL 616
            L KLLLIGDSGVGKSCLLLR                  KI+TIELDGK IKLQIWDTAGQERF TIT++YYRGA G L+VYDVTD+ S+ N++ W++ I++HAS+NVNK+LVGNK+D+  +K+ V  +  +  AD  GI F ETSAK   NVE+ F ++A +IK+++
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDL-TTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQM 173          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 186.808 bits (473), Expect = 1.722e-46
Identity = 96/165 (58.18%), Postives = 119/165 (72.12%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQ 610
            L KLLLIGDSGVGKSCLLLR                  KIRTI LDGK IKLQIWDTAGQERFRTIT++YYRGA GI++VYDVTD  SFNN++ W++ I+++A D+V ++LVGNK D+ E K+ V TS  +  AD  GI F ETSAK++ NVE+ F  +A +IK+
Sbjct:    8 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIE-KKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEIKK 171          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 3.971e-43
Identity = 91/200 (45.50%), Postives = 126/200 (63.00%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFKSEPQTIKINQPNTGASGAPAAQKSACC 715
            L KLLLIG+SGVGKSCLLLR                  KI+T+ELDGK +KLQIWDTAGQERFRTIT++YYRG+ GI++VYDVTD+ SFN ++ W++ I+++A+  V K+LVGNK D+ + KR V     +  AD   + F ETSA  + NVE+ F ++A+ IK+ +++ +     Q  K ++ N    G         C
Sbjct:    8 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDL-KDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQK-KEDKGNVNLKGQSLTNTGGGC 205          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 6.773e-43
Identity = 90/199 (45.23%), Postives = 127/199 (63.82%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFKSEPQTIKINQPNTGASGAPAAQKSAC 712
            + KLL+IG+S VGK+  L R                  K++T+    KR+KLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN++++W   I+ ++ +N   +LVGNK DMD S+R V   +G+ LAD+ G++FFETSAK N+NV+ VF  + + I  ++AES  K   Q  K  +     +  PA Q+  C
Sbjct:   22 MFKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMD-SERVVSMDRGRQLADQLGLEFFETSAKENINVKAVFEKLVEIICDKMAESLDKDPQQQPKGQKLEANPTQKPAQQQCNC 219          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.574e-42
Identity = 93/208 (44.71%), Postives = 129/208 (62.02%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAES--DFKSEPQTIKINQPNTGAS------GAPAAQKSACC 715
            L K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++  W+ +  QH++ N+  +L+GNK+D+ E++R V   +G+A A E+G+ F ETSAKT  NVEE F + AK+I Q++ +   D  +E   IKI   ++ AS      G+   Q   CC
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDL-EARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIYQKIQDGVFDINNEANGIKIGPQHSPASQSLNVGGSGGNQGGNCC 212          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB2A_RABIT (Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.574e-42
Identity = 93/196 (47.45%), Postives = 126/196 (64.29%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAES--DFKSEPQTIKINQPNTGASGAPAA 697
            L K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++  W+ +  QH++ N+  +L+GNK+D+ ES+R V   +G+A A E+G+ F ETSAKT  NVEE F + AK+I +++ E   D  +E   IKI  P  GA+ A  A
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDL-ESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIKIG-PQHGATNATHA 199          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.574e-42
Identity = 87/165 (52.73%), Postives = 116/165 (70.30%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQ 610
            L+K+L+IGDSGVGKSC+LLR                   IRTIELDGK+IKLQIWDTAGQERF+TITT+YYRGA G+++VYD+T   SFN+I+ W+ ++++ AS +V K++VGNK D++ SKRAV     +  ADE  I   ETSAK +  ++E F  +A DIK+
Sbjct:   33 LLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLN-SKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFIKLASDIKK 196          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 5.734e-42
Identity = 90/209 (43.06%), Postives = 127/209 (60.77%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFKSEPQTIKINQPNTGASGAP---------AAQKSACC 715
            L K ++IGD+GVGKSCLLL+                    R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G LLVYD+T   +FN++ +W+ +  QHA+ N+  +L+GNK D+   +RAV T +G+  A E+G+ F ETSA+T  NVEE F + AK+I +++ +  F    ++  I     G +  P         AA+ S+CC
Sbjct:    6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTH-RRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGGGNAGPQTVKPGEGGAAKSSSCC 213          
The following BLAST results are available for this feature:
BLAST of DY259966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SEC4_CANAL1.558e-4749.76Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
RAB1B_PIG2.657e-4750.00Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
RAB1C_HUMAN1.010e-4656.29Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
RAB1B_DICDI1.722e-4658.18Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
YPT1_YEAST3.971e-4345.50GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RAB3_CAEEL6.773e-4345.23Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]
RAB2_LYMST2.574e-4244.71Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB2A_RABIT2.574e-4247.45Ras-related protein Rab-2A OS=Oryctolagus cuniculu... [more]
RAB1C_DICDI2.574e-4252.73Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
YPTC4_CHLRE5.734e-4243.06GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YM18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259966 ID=DY259966; Name=DY259966; organism=Citrus clementina; type=EST; length=1019bp
CGGCGACTTGTTAATTCTTCTCACCCTTACAGTTTCAGAAAGAGAGTAAT
TGATTTGTTGTGAGAGAGAAGAGATGGCTGCACCACCAGCGAGGGCACGT
GCTGATTATGATTACCTCATCAAGCTTCTTTTGATCGGTGACAGCGGTGT
GGGGAAGAGTTGTTTGCTTCTGCGATTTTCAGACGGTTCCTTCACAACCA
GTTTTATTACTACTATTGGCATTGATTTTAAGATAAGAACCATCGAGCTT
GATGGAAAACGGATTAAATTGCAAATTTGGGATACAGCTGGTCAGGAACG
GTTTCGAACCATCACAACAGCTTACTACCGTGGAGCCATGGGGATTTTGC
TGGTGTATGATGTTACTGACGAGTCATCTTTCAACAATATTAGGAACTGG
ATTCGCAACATTGAACAGCATGCTTCTGACAATGTCAACAAGATACTTGT
TGGGAACAAGGCTGACATGGATGAGAGCAAAAGGGCTGTGCCTACTTCAA
AGGGTCAAGCACTTGCTGATGAGTATGGTATCAAGTTCTTTGAAACTAGT
GCAAAAACTAATTTGAATGTGGAGGAGGTTTTCTTTTCAATTGCCAAGGA
TATCAAGCAAAGACTTGCCGAATCAGATTTCAAATCCGAGCCTCAGACAA
TTAAAATTAACCAACCCAATACCGGAGCCAGTGGCGCCCCAGCTGCCCAA
AAGTCAGCTTGCTGTGGCGGTACCTAAACCAAATCCCAATTAGGTCGGGG
GGAAAAGATTCGGCCAAAGGCGAGCATTCCGTTGGTCAACCAATCCTTGT
TGACATTTATGAGGGAGCCTGGTATTTATCCCCCGGTCCTTTTTTCCCCA
CCCACCCCATTTCCTAACACGCCAAAGGGCACCCCTTCTCCCAGCCCATT
CCGGAAACCTAGAAAATGGACCCCCTCTTTCCCATGCCGCCGCACCCCCA
CCCCCCCCCCACCACTCCCCACGGTCCTCTAAGTAACACACACACATTCC
AACTCCTCTACCTTTCACC
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