DY259966

Overview
NameDY259966
Unique NameDY259966
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1019
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB3A_HUMAN (Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 8.280e-41
Identity = 88/200 (44.00%), Postives = 123/200 (61.50%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFKSEPQTIKINQ-PNTGASGAPAAQKSAC 712
            + K+L+IG+S VGK+  L R                  K++TI  + KRIKLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   +LVGNK DM E +R V + +G+ LAD  G +FFE SAK N+NV++ F  +   I ++++ES   ++P      Q P       P  Q  AC
Sbjct:   22 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDM-EDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSESLDTADPAVTGAKQGPQLSDQQVPPHQDCAC 220          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB3C_HUMAN (Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.081e-40
Identity = 87/200 (43.50%), Postives = 123/200 (61.50%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFKSEPQTIKINQPNTGASGAPAAQKSACC 715
            + KLL+IG+S VGK+  L R                  K++T+  + KRIKLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILVGNK DM E +R + T +GQ L ++ G +FFETSAK N+NV++ F  +   I  +++ES  +++P      Q        P  Q +  C
Sbjct:   30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDM-EDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSES-LETDPAITAAKQNTRLKETPPPPQPNCAC 227          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB2A_DICDI (Ras-related protein Rab-2A OS=Dictyostelium discoideum GN=rab2A PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 1.081e-40
Identity = 94/205 (45.85%), Postives = 125/205 (60.98%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDF--KSEPQTIKINQPNTGASGAPAAQKSA---CC 715
            L K ++IGD+GVGKSCLLL+                    R I +D K IKLQIWDTAGQE FR+IT +YYRG+ G LLVYD+T   +FN++  W+++   +A+ N+  IL+GNK+DM ESKRAV   +G+  ADE G+ F ETSAKT  NVEE F + A  I +++ + DF   +E   IK+  P +   G    QK A   CC
Sbjct:    5 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKAIKLQIWDTAGQESFRSITRSYYRGSAGALLVYDITRRDTFNHLTCWLKDARSYANSNMTIILIGNKSDM-ESKRAVSYEEGRQFADENGLIFLETSAKTASNVEEAFVNTASKIYEKIQKGDFDINNESFGIKLGAPTSKQDGTD--QKPAGGGCC 206          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB15_RAT (Ras-related protein Rab-15 OS=Rattus norvegicus GN=Rab15 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.081e-40
Identity = 82/165 (49.70%), Postives = 114/165 (69.09%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQ 610
            L +LLLIGDSGVGK+CLL R                  K++TIE+DG ++++QIWDTAGQER++TIT  YYR A GI LVYD++ E S+ +I  W+ +++++A + V KIL+GNKAD +E KR V   +GQ LA EYG+ F+ETSA TNLN++E F  + + + Q
Sbjct:    8 LFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD-EEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTELVLQ 171          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB15_HUMAN (Ras-related protein Rab-15 OS=Homo sapiens GN=RAB15 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.081e-40
Identity = 82/165 (49.70%), Postives = 114/165 (69.09%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQ 610
            L +LLLIGDSGVGK+CLL R                  K++TIE+DG ++++QIWDTAGQER++TIT  YYR A GI LVYD++ E S+ +I  W+ +++++A + V KIL+GNKAD +E KR V   +GQ LA EYG+ F+ETSA TNLN++E F  + + + Q
Sbjct:    8 LFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD-EEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTELVLQ 171          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB15_BOVIN (Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.412e-40
Identity = 82/165 (49.70%), Postives = 114/165 (69.09%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQ 610
            L +LLLIGDSGVGK+CLL R                  K++TIE+DG ++++QIWDTAGQER++TIT  YYR A GI LVYD++ E S+ +I  W+ +++++A + V KIL+GNKAD +E KR V   +GQ LA EYG+ F+ETSA TNLN++E F  + + + Q
Sbjct:    8 LFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD-EEQKRQVGREQGQQLAREYGMDFYETSACTNLNIKESFTRLTELVLQ 171          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.409e-40
Identity = 91/200 (45.50%), Postives = 122/200 (61.00%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFKSEPQTIK-INQPNTGASGAPAAQKSAC 712
            + KLLLIG+S VGK+  L R                  K++T+    KRIKLQIWDTAGQER+RTITTAYYRGAMG LL+YD+ ++ SF  +++W   I+ ++ DN   ILVGNK D+ E +R VP   G+ LAD+ G +FFE SAK N+NV++VF  +   I +++ ES    EP +    N        APA Q S+C
Sbjct:   22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDL-EDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMNES---LEPSSSSGSNGKGPAVGDAPAPQPSSC 217          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB3C_BOVIN (Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 2.409e-40
Identity = 88/199 (44.22%), Postives = 125/199 (62.81%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFKSEPQTIKINQPNTGASGAPAAQKSAC 712
            + KLL+IG+S VGK+  L R                  K++T+  + KRIKLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILVGNK DM E +R + T +GQ L ++ G +FFETSAK N+NV++ F  +   I  +++ES  +++P  I   + NT     P   +  C
Sbjct:   30 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFKNEKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDM-EDERVISTERGQHLGEQLGFEFFETSAKDNINVKQTFERLVDIICDKMSES-LETDP-AITAAKQNTRLKETPPPPQPNC 225          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB3B_BOVIN (Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.409e-40
Identity = 84/200 (42.00%), Postives = 125/200 (62.50%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQRLAESDFKSEPQTIKINQPNTGASGAPAAQKSACC 715
            + KLL+IG+S VGK+  L R                  K++T+    KR+KLQIWDTAGQER+RTITTAYYRGAMG +L+YD+T+E SFN +++W   I+ ++ DN   ILVGNK DM+E +R VPT KG+ LA++ G  FFE SAK N++V + F  +   I  +++++   ++P  +  ++    +   P  Q++  C
Sbjct:   22 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEE-ERVVPTEKGRLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSDT-LDTDPSLLGTSKNTRLSDTPPLLQQNCSC 219          
BLAST of DY259966 vs. ExPASy Swiss-Prot
Match: RAB15_MOUSE (Ras-related protein Rab-15 OS=Mus musculus GN=Rab15 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.409e-40
Identity = 81/165 (49.09%), Postives = 114/165 (69.09%), Query Frame = 2
Query:  116 LIKLLLIGDSGVGKSCLLLRXXXXXXXXXXXXXXXXXXKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEEVFFSIAKDIKQ 610
            L +LLLIGDSGVGK+CLL R                  K++TI++DG ++++QIWDTAGQER++TIT  YYR A GI LVYD++ E S+ +I  W+ +++++A + V KIL+GNKAD +E KR V   +GQ LA EYG+ F+ETSA TNLN++E F  + + + Q
Sbjct:    8 LFRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIDVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKAD-EEQKRQVGREQGQQLAKEYGMDFYETSACTNLNIKESFTRLTELVLQ 171          
The following BLAST results are available for this feature:
BLAST of DY259966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3A_HUMAN8.280e-4144.00Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3... [more]
RAB3C_HUMAN1.081e-4043.50Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3... [more]
RAB2A_DICDI1.081e-4045.85Ras-related protein Rab-2A OS=Dictyostelium discoi... [more]
RAB15_RAT1.081e-4049.70Ras-related protein Rab-15 OS=Rattus norvegicus GN... [more]
RAB15_HUMAN1.081e-4049.70Ras-related protein Rab-15 OS=Homo sapiens GN=RAB1... [more]
RAB15_BOVIN1.412e-4049.70Ras-related protein Rab-15 OS=Bos taurus GN=RAB15 ... [more]
RAB3D_HUMAN2.409e-4045.50Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]
RAB3C_BOVIN2.409e-4044.22Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C ... [more]
RAB3B_BOVIN2.409e-4042.00Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B ... [more]
RAB15_MOUSE2.409e-4049.09Ras-related protein Rab-15 OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YM18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259966 ID=DY259966; Name=DY259966; organism=Citrus clementina; type=EST; length=1019bp
CGGCGACTTGTTAATTCTTCTCACCCTTACAGTTTCAGAAAGAGAGTAAT
TGATTTGTTGTGAGAGAGAAGAGATGGCTGCACCACCAGCGAGGGCACGT
GCTGATTATGATTACCTCATCAAGCTTCTTTTGATCGGTGACAGCGGTGT
GGGGAAGAGTTGTTTGCTTCTGCGATTTTCAGACGGTTCCTTCACAACCA
GTTTTATTACTACTATTGGCATTGATTTTAAGATAAGAACCATCGAGCTT
GATGGAAAACGGATTAAATTGCAAATTTGGGATACAGCTGGTCAGGAACG
GTTTCGAACCATCACAACAGCTTACTACCGTGGAGCCATGGGGATTTTGC
TGGTGTATGATGTTACTGACGAGTCATCTTTCAACAATATTAGGAACTGG
ATTCGCAACATTGAACAGCATGCTTCTGACAATGTCAACAAGATACTTGT
TGGGAACAAGGCTGACATGGATGAGAGCAAAAGGGCTGTGCCTACTTCAA
AGGGTCAAGCACTTGCTGATGAGTATGGTATCAAGTTCTTTGAAACTAGT
GCAAAAACTAATTTGAATGTGGAGGAGGTTTTCTTTTCAATTGCCAAGGA
TATCAAGCAAAGACTTGCCGAATCAGATTTCAAATCCGAGCCTCAGACAA
TTAAAATTAACCAACCCAATACCGGAGCCAGTGGCGCCCCAGCTGCCCAA
AAGTCAGCTTGCTGTGGCGGTACCTAAACCAAATCCCAATTAGGTCGGGG
GGAAAAGATTCGGCCAAAGGCGAGCATTCCGTTGGTCAACCAATCCTTGT
TGACATTTATGAGGGAGCCTGGTATTTATCCCCCGGTCCTTTTTTCCCCA
CCCACCCCATTTCCTAACACGCCAAAGGGCACCCCTTCTCCCAGCCCATT
CCGGAAACCTAGAAAATGGACCCCCTCTTTCCCATGCCGCCGCACCCCCA
CCCCCCCCCCACCACTCCCCACGGTCCTCTAAGTAACACACACACATTCC
AACTCCTCTACCTTTCACC
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