DY259971

Overview
NameDY259971
Unique NameDY259971
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length920
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA_LACSA (Glutamine synthetase OS=Lactuca sativa PE=2 SV=2)

HSP 1 Score: 278.1 bits (710), Expect = 4.879e-74
Identity = 134/182 (73.63%), Postives = 146/182 (80.22%), Query Frame = 2 
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLLQKD NWPL                   ADKA GRDIV++HYKACLYAG+NISGINGEVMPGQWEFQVGP VGI++ DQ+W+ARYILERITEI GVV+SFDPKPI GDWNGAGAH NYSTK+MR +GG +VI KAIEKLG R  EHIAAYGEGNERRLTGRHE ADINTF WGV+
Sbjct:  128 IEQEYTLLQKDTNWPLGWPLGGFPGPQGPYYCGIGADKAFGRDIVDAHYKACLYAGVNISGINGEVMPGQWEFQVGPSVGIAAADQIWVARYILERITEIYGVVVSFDPKPIPGDWNGAGAHTNYSTKTMREEGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVA 309
[Close]
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA4_MAIZE (Glutamine synthetase root isozyme 4 OS=Zea mays GN=GLN5 PE=2 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 6.372e-74
Identity = 135/182 (74.18%), Postives = 147/182 (80.77%), Query Frame = 2 
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLLQKD NWPL                   A+K+ GRDIV++HYKACLYAGINISGINGEVMPGQWEFQVGP VGISSGDQ+W+ARYILERITEIAGVV++FDPKPI GDWNGAGAH NYST+SMR +GG +VI  AIEKL  R  EHIAAYGEGNERRLTGRHE ADINTFSWGV+
Sbjct:  128 IEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHKEHIAAYGEGNERRLTGRHETADINTFSWGVA 309
[Close]
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLN13_ARATH (Glutamine synthetase cytosolic isozyme 1-3 OS=Arabidopsis thaliana GN=GLN1-3 PE=1 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 6.372e-74
Identity = 130/182 (71.43%), Postives = 149/182 (81.87%), Query Frame = 2 
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTL+QKD+NWP+                   ADKA+GRDIV++HYKACLYAGI ISGINGEVMPGQWEFQVGP  GISSGDQ+W+ARY+LERITEI+GV++SFDPKP+ GDWNGAGAH NYSTK+MRNDGG++VI KAI KL  +  EHIAAYGEGNERRLTG+HE ADINTFSWGV+
Sbjct:  128 IEQEYTLMQKDVNWPIGWPVGGYPGPQGPYYCGVGADKAIGRDIVDAHYKACLYAGIGISGINGEVMPGQWEFQVGPVEGISSGDQVWVARYLLERITEISGVIVSFDPKPVPGDWNGAGAHCNYSTKTMRNDGGLEVIKKAIGKLQLKHKEHIAAYGEGNERRLTGKHETADINTFSWGVA 309
[Close]
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLN14_ARATH (Glutamine synthetase cytosolic isozyme 1-4 OS=Arabidopsis thaliana GN=GLN1-4 PE=1 SV=1)

HSP 1 Score: 277.33 bits (708), Expect = 8.323e-74
Identity = 134/182 (73.63%), Postives = 145/182 (79.67%), Query Frame = 2 
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLLQKDI WP+                   ADKA GRDIV+SHYKACLYAGIN+SG NGEVMPGQWEFQVGP VGI++ DQ+W+ARYILERITE+AGVVLS DPKPI GDWNGAGAH NYSTKSMR DGG +VI KAIEKLG R  EHIAAYGEGNERRLTG+HE ADINTF WGV+
Sbjct:  128 IEQEYTLLQKDIKWPVGWPVGGFPGPQGPYYCGVGADKAFGRDIVDSHYKACLYAGINVSGTNGEVMPGQWEFQVGPTVGIAAADQVWVARYILERITELAGVVLSLDPKPIPGDWNGAGAHTNYSTKSMREDGGYEVIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETADINTFLWGVA 309
[Close]
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLN11_ARATH (Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2)

HSP 1 Score: 276.559 bits (706), Expect = 1.420e-73
Identity = 131/182 (71.98%), Postives = 146/182 (80.22%), Query Frame = 2 
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLLQKD+ WP+                   ADK+ GRD+V+SHYKACLYAGINISGINGEVMPGQWEFQVGP VGIS+ D++W+ARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR +GG ++I KAI+KLG R  EHIAAYGEGNERRLTG HE ADINTF WGV+
Sbjct:  128 IEQEYTLLQKDVKWPVGWPIGGYPGPQGPYYCGIGADKSFGRDVVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAADEIWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHCNYSTKSMREEGGYEIIKKAIDKLGLRHKEHIAAYGEGNERRLTGHHETADINTFLWGVA 309
[Close]
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLN12_ARATH (Glutamine synthetase cytosolic isozyme 1-2 OS=Arabidopsis thaliana GN=GLN1-2 PE=1 SV=2)

HSP 1 Score: 275.018 bits (702), Expect = 4.130e-73
Identity = 132/182 (72.53%), Postives = 146/182 (80.22%), Query Frame = 2 
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLLQKD+NWPL                   ADK+ GRDIV++HYKA LYAGINISGINGEVMPGQWEFQVGP VGIS+ D++W+ARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR +GG ++I KAIEKLG R  EHI+AYGEGNERRLTG HE ADINTF WGV+
Sbjct:  128 IEQEYTLLQKDVNWPLGWPIGGFPGPQGPYYCSIGADKSFGRDIVDAHYKASLYAGINISGINGEVMPGQWEFQVGPSVGISAADEIWIARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMREEGGYEIIKKAIEKLGLRHKEHISAYGEGNERRLTGHHETADINTFLWGVA 309
[Close]
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA_NICPL (Glutamine synthetase OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 5.395e-73
Identity = 134/182 (73.63%), Postives = 147/182 (80.77%), Query Frame = 2 
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLLQ+DINWPL                   ADKA GRDIV+SHYKA LYAGINISGINGEVMPGQWEFQVGP VGIS+GD++W+ARYILERI EIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR DGG +VI KAIEKLG +  EHIAAYGEGNERRLTG+HE A+I+TF WGV+
Sbjct:  128 IEQEYTLLQRDINWPLGWPIGGFPGPQGPYYCGTGADKAFGRDIVDSHYKAYLYAGINISGINGEVMPGQWEFQVGPSVGISAGDEVWVARYILERIAEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMREDGGYEVILKAIEKLGLKHKEHIAAYGEGNERRLTGKHETANISTFKWGVA 309
[Close]
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA3_MAIZE (Glutamine synthetase root isozyme 3 OS=Zea mays GN=GLN4 PE=1 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 9.202e-73
Identity = 133/182 (73.08%), Postives = 146/182 (80.22%), Query Frame = 2 
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLLQKD NWPL                   A+K+ GRDIV++HYKACLYAGINISGINGEVMPGQWEFQVGP VGISSGDQ+W+ARYILERITEIAGVV++FDPKPI GDWNGAGAH NYST+SMR +GG +VI  AIEKL  R  EHIAAYGEGN+ RLTGRHE ADINTFSWGV+
Sbjct:  128 IEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTESMRKEGGYEVIKAAIEKLKLRHREHIAAYGEGNDGRLTGRHETADINTFSWGVA 309
[Close]
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA3_HORVU (Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 273.863 bits (699), Expect = 9.202e-73
Identity = 132/182 (72.53%), Postives = 146/182 (80.22%), Query Frame = 2 
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLLQKDINWPL                   ADK+ GRDIV+SHYKACL+ G+NISGINGEVMPGQWEFQVGP VGIS+GDQ+W+ARYILERITEIAGVV++FDPKPI GDWNGAGAH NYST+SMRNDGG  VI  A+EKL  +  EHIAAYGEGNERRLTG+HE ADINT SWGV+
Sbjct:  128 IEQEYTLLQKDINWPLGWPVGGFPGPQGPYYCGIGADKSFGRDIVDSHYKACLFGGVNISGINGEVMPGQWEFQVGPTVGISAGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTESMRNDGGFKVIVDAVEKLKLKHKEHIAAYGEGNERRLTGKHETADINTSSWGVA 309
[Close]
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLN12_ORYSJ (Glutamine synthetase cytosolic isozyme 1-2 OS=Oryza sativa subsp. japonica GN=GLN1-2 PE=1 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 1.202e-72
Identity = 130/182 (71.43%), Postives = 145/182 (79.67%), Query Frame = 2 
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLLQKD+NWPL                   A+KA GRDIV++HYKAC+YAGINISGINGEVMPGQWEFQVGP VGI++ DQ+W+ARYILER+TE+AGVVLS DPKPI GDWNGAGAH N+STKSMR  GG +VI KAI+KL  R  EHIAAYGEGNERRLTGRHE ADINTF WGV+
Sbjct:  128 IEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCAAGAEKAFGRDIVDAHYKACIYAGINISGINGEVMPGQWEFQVGPSVGIAAADQVWVARYILERVTEVAGVVLSLDPKPIPGDWNGAGAHTNFSTKSMREPGGYEVIKKAIDKLALRHKEHIAAYGEGNERRLTGRHETADINTFKWGVA 309
The following BLAST results are available for this feature:
BLAST of DY259971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA_LACSA4.879e-7473.63Glutamine synthetase OS=Lactuca sativa PE=2 SV=2[more]
GLNA4_MAIZE6.372e-7474.18Glutamine synthetase root isozyme 4 OS=Zea mays GN... [more]
GLN13_ARATH6.372e-7471.43Glutamine synthetase cytosolic isozyme 1-3 OS=Arab... [more]
GLN14_ARATH8.323e-7473.63Glutamine synthetase cytosolic isozyme 1-4 OS=Arab... [more]
GLN11_ARATH1.420e-7371.98Glutamine synthetase cytosolic isozyme 1-1 OS=Arab... [more]
GLN12_ARATH4.130e-7372.53Glutamine synthetase cytosolic isozyme 1-2 OS=Arab... [more]
GLNA_NICPL5.395e-7373.63Glutamine synthetase OS=Nicotiana plumbaginifolia ... [more]
GLNA3_MAIZE9.202e-7373.08Glutamine synthetase root isozyme 3 OS=Zea mays GN... [more]
GLNA3_HORVU9.202e-7372.53Glutamine synthetase OS=Hordeum vulgare PE=2 SV=1[more]
GLN12_ORYSJ1.202e-7271.43Glutamine synthetase cytosolic isozyme 1-2 OS=Oryz... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YM23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259971 ID=DY259971; Name=DY259971; organism=Citrus clementina; type=EST; length=920bp
CATTGAGCCCCTCTACACTCTTCTTCAAAAAGACATAAACTGGCCCTTGG
GGTGGCCAGTTGGCGGCTATCCTGGCCCTCAGGGACCTTACTACTGCGGT
GTTGGCGCTGATAAGGCTTTAGGCCGAGACATTGTGAATTCTCACTACAA
AGCTTGCCTTTACGCTGGAATTAACATCAGTGGCATTAACGGTGAAGTTA
TGCCGGGTCAGTGGGAATTCCAAGTGGGTCCCTGTGTGGGTATCTCTTCT
GGTGATCAGTTATGGATGGCTCGGTACATACTCGAGAGGATTACTGAAAT
TGCCGGAGTTGTTCTTTCATTTGATCCAAAACCAATCAAGGGTGACTGGA
ATGGTGCTGGTGCACACGCCAACTACAGCACCAAGTCTATGAGGAATGAT
GGTGGAATTGATGTGATCAACAAGGCAATTGAAAAGTTGGGGAAACGCCC
CGGGGAACACATTGCTGCTTATGGAGAGGGCAACGAAAGAAGACTGACTG
GTCGACATGAAATTGCAGATATCAACACTTTCTCTTGGGGTGTTTCCTAA
TAAAGGTGCCTCCATTCACGTTTGGCCTTGACACCGCCAAAGATGGAAAA
GGAATACTCTTTAAGAACAACGGCCCCCCTTATACACAAACCCATTTGCT
GTGAATTTCTATAATCCTTAACACCTTCTTACTGCGGTACCCATTACATA
AAACGGTGATCTGTTACAAAGATACAAAAACACAGTAAATGGTAACTCTC
TATATCACCCCACTCACTAACAGATCCCACGTCTCCAACTATAACCGAAT
CCTTACGCAAATGCTACAATTAAATTCACTACGTTTAATTTTATATCTCC
TATCTTATCACTATTACCTAACTTACCCCTCCTCGTCCTCCAATCCCCAA
ACCTATTTACCCCTTCCCGG
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