DY259971

Overview
NameDY259971
Unique NameDY259971
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length920
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLN13_ORYSJ (Glutamine synthetase cytosolic isozyme 1-3 OS=Oryza sativa subsp. japonica GN=GLN1-3 PE=2 SV=1)

HSP 1 Score: 271.937 bits (694), Expect = 3.497e-72
Identity = 130/182 (71.43%), Postives = 146/182 (80.22%), Query Frame = 2
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLLQK INWPL                   ADK+ GRDIV++HYKACL+AGINISGIN EVMPGQWEFQ+GP VG+S+GD +W+ARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR++GG +VI KAI+KLG R  EHIAAYG+GNERRLTGRHE ADIN F WGV+
Sbjct:  130 IEQEYTLLQKHINWPLGWPLGGYPGPQGPYYCAAGADKSYGRDIVDAHYKACLFAGINISGINAEVMPGQWEFQIGPVVGVSAGDHVWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMRSNGGYEVIKKAIKKLGMRHREHIAAYGDGNERRLTGRHETADINNFVWGVA 311          
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 5.964e-72
Identity = 130/182 (71.43%), Postives = 145/182 (79.67%), Query Frame = 2
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            +E  YTLLQKD+ WPL                   ADKA GRDIV++HYKACLY+GINISGINGEVMPGQWEFQVGP VGIS+ D+LW AR+I+ERITE AGVVLSFDPKPI+GDWNGAG H NYSTKSMR +GG +VI KAIEKL  R  EHI+AYGEGNERRLTGRHE AD+NTFSWGV+
Sbjct:  129 LEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDAHYKACLYSGINISGINGEVMPGQWEFQVGPSVGISAADELWCARFIMERITEKAGVVLSFDPKPIEGDWNGAGCHTNYSTKSMRKEGGFEVIKKAIEKLKLRHKEHISAYGEGNERRLTGRHETADMNTFSWGVA 310          
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA1_DAUCA (Glutamine synthetase cytosolic isozyme OS=Daucus carota GN=GLN1 PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.919e-70
Identity = 127/182 (69.78%), Postives = 145/182 (79.67%), Query Frame = 2
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLL+K++N P+                   ADKA GRDIV++HYKACLYAGINISGINGEVMPGQWEFQVGP VGIS+GD+LW+ARYILERITEIAGVV+S DPKPI GDWNGAGAH NYSTKSMRN+GG ++I KAI KL  +  +HIAAYGEGNERRLTG+HE A I+ FSWGV+
Sbjct:  127 IEQEYTLLKKEVNCPIGCPTGGYPGPQGPYYCGIGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDELWVARYILERITEIAGVVVSLDPKPIPGDWNGAGAHTNYSTKSMRNEGGFEIIKKAIAKLETKHAQHIAAYGEGNERRLTGKHETASIHKFSWGVA 308          
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA2_MAIZE (Glutamine synthetase root isozyme 2 OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 7.291e-70
Identity = 132/181 (72.93%), Postives = 142/181 (78.45%), Query Frame = 2
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGV 544
            IE  YTLLQKD  WPL                   ADK+ GRDIV+  YKACLYAGI+ISGINGEVMPGQWEFQV P VG+S+GDQLW+ARYILERITEIAGVV+SFDPKPI GDWNGAGAH NYSTKSMR+DGG +VI KAI KLG R  EHIAAYG+GNER LTGRHE ADINTF WGV
Sbjct:  128 IEQEYTLLQKDTKWPLGWPLAYPGPQGPYYCAAG-ADKSYGRDIVDCAYKACLYAGIDISGINGEVMPGQWEFQVAPAVGVSAGDQLWVARYILERITEIAGVVVSFDPKPIPGDWNGAGAHTNYSTKSMRSDGGYEVIKKAIGKLGLRHREHIAAYGDGNERPLTGRHETADINTFVWGV 307          
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLN15_ARATH (Glutamine synthetase cytosolic isozyme 1-5 OS=Arabidopsis thaliana GN=GLN1-5 PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.624e-69
Identity = 122/182 (67.03%), Postives = 144/182 (79.12%), Query Frame = 2
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLL+KD+ WPL                   ADKA GRDIV++HYKACLY+G++I G NGEVMPGQWEFQ+ P VGI +GDQLW+ARYILERITEI GV++SFDPKPI+GDWNGA AH N+STKSMR DGG+D+I +AI+KL  +  +HIAAYGEGNERRLTG+HE ADINTFSWGV+
Sbjct:  128 IEQEYTLLKKDVKWPLGWPLGGFPGPQGPYYCAVGADKAFGRDIVDAHYKACLYSGLSIGGANGEVMPGQWEFQISPTVGIGAGDQLWVARYILERITEICGVIVSFDPKPIQGDWNGAAAHTNFSTKSMRKDGGLDLIKEAIKKLEVKHKQHIAAYGEGNERRLTGKHETADINTFSWGVA 309          
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA4_PHAVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 1.164e-67
Identity = 123/182 (67.58%), Postives = 138/182 (75.82%), Query Frame = 2
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLLQ ++NWPL                   ADK+ GRDI ++HYKACL+AGINISG NGEVMPGQWE+QVGP VGI +GD +W +RYILERITE AGVVLS DPKPI+GDWNGAG H NYSTKSMR DGG +VI KAI  L  R  EHI+AYGEGNERRLTG+HE A INTFSWGV+
Sbjct:  185 IEQEYTLLQTNVNWPLGWPVGGYPGPQGPYYCSAGADKSFGRDISDAHYKACLFAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWASRYILERITEQAGVVLSLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASINTFSWGVA 366          
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA2_DAUCA (Glutamine synthetase, chloroplastic OS=Daucus carota GN=GLN2 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 4.423e-67
Identity = 121/182 (66.48%), Postives = 138/182 (75.82%), Query Frame = 2
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTL+Q+D+NWPL                   ADK+ GRDI ++HYKACLYAGINISG NGEVMPGQWEFQVGP VGI +GD +W ARY+LERITE AGVVL+ DPKPI GDWNGAG H NYSTKSMR +GG +VI KAI  L  R  EHI+AYGEGNERRLTG+HE A I++FSWGV+
Sbjct:  188 IEQEYTLMQQDVNWPLGWNVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEFQVGPSVGIEAGDHIWCARYLLERITEQAGVVLTLDPKPIDGDWNGAGCHTNYSTKSMREEGGFEVIKKAILNLSLRHKEHISAYGEGNERRLTGKHETASIDSFSWGVA 369          
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA2_MEDSA (Glutamine synthetase leaf isozyme, chloroplastic OS=Medicago sativa GN=GS2 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.287e-66
Identity = 122/182 (67.03%), Postives = 135/182 (74.18%), Query Frame = 2
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLLQ D+ WPL                   ADK+ GRDI ++HYKACLYAGINISG NGEVMPGQWE+QVGP VGI +GD +W +RYILERITE AGVVL+ DPKPI+GDWNGAG H NYSTKSMR DGG +VI KAI  L  R   HI AYGEGNERRLTG+HE A INTFSWGV+
Sbjct:  184 IEQEYTLLQTDVKWPLGWPVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWASRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKVHIEAYGEGNERRLTGKHETASINTFSWGVA 365          
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNAC_MAIZE (Glutamine synthetase, chloroplastic OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 2.195e-66
Identity = 120/182 (65.93%), Postives = 137/182 (75.27%), Query Frame = 2
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLLQKD+NWPL                   ADK+ GRDI ++HYKACLYAGINISG NGEVMPGQWE+QVGP VGI +GD +W++RYILERITE AGVVL+ DPKPI+GDWNGAG H NYSTK+MR DGG + I +AI  L  R   HI+AYGEGNERRLTG+HE A I TFSWGV+
Sbjct:  179 IEQEYTLLQKDVNWPLGWPVGGFPGPQGPYYCAVGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWISRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTKTMREDGGFEEIKRAILNLSLRHDLHISAYGEGNERRLTGKHETASIGTFSWGVA 360          
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA2_ORYSJ (Glutamine synthetase, chloroplastic OS=Oryza sativa subsp. japonica GN=GLN2 PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 3.745e-66
Identity = 120/182 (65.93%), Postives = 137/182 (75.27%), Query Frame = 2
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YTLLQ+D+NWPL                   +DK+ GRDI ++HYKACLYAGINISG NGEVMPGQWE+QVGP VGI +GD +W++RYILERITE AGVVL+ DPKPI+GDWNGAG H NYSTKSMR DGG +VI KAI  L  R   HI+AYGEGNERRLTG HE A I+ FSWGV+
Sbjct:  184 IEQEYTLLQRDVNWPLGWPVGGYPGPQGPYYCAVGSDKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWISRYILERITEQAGVVLTLDPKPIQGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHDLHISAYGEGNERRLTGLHETASIDNFSWGVA 365          
The following BLAST results are available for this feature:
BLAST of DY259971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLN13_ORYSJ3.497e-7271.43Glutamine synthetase cytosolic isozyme 1-3 OS=Oryz... [more]
GLNA_PINSY5.964e-7271.43Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLNA1_DAUCA1.919e-7069.78Glutamine synthetase cytosolic isozyme OS=Daucus c... [more]
GLNA2_MAIZE7.291e-7072.93Glutamine synthetase root isozyme 2 OS=Zea mays GN... [more]
GLN15_ARATH1.624e-6967.03Glutamine synthetase cytosolic isozyme 1-5 OS=Arab... [more]
GLNA4_PHAVU1.164e-6767.58Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_DAUCA4.423e-6766.48Glutamine synthetase, chloroplastic OS=Daucus caro... [more]
GLNA2_MEDSA1.287e-6667.03Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNAC_MAIZE2.195e-6665.93Glutamine synthetase, chloroplastic OS=Zea mays GN... [more]
GLNA2_ORYSJ3.745e-6665.93Glutamine synthetase, chloroplastic OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YM23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259971 ID=DY259971; Name=DY259971; organism=Citrus clementina; type=EST; length=920bp
CATTGAGCCCCTCTACACTCTTCTTCAAAAAGACATAAACTGGCCCTTGG
GGTGGCCAGTTGGCGGCTATCCTGGCCCTCAGGGACCTTACTACTGCGGT
GTTGGCGCTGATAAGGCTTTAGGCCGAGACATTGTGAATTCTCACTACAA
AGCTTGCCTTTACGCTGGAATTAACATCAGTGGCATTAACGGTGAAGTTA
TGCCGGGTCAGTGGGAATTCCAAGTGGGTCCCTGTGTGGGTATCTCTTCT
GGTGATCAGTTATGGATGGCTCGGTACATACTCGAGAGGATTACTGAAAT
TGCCGGAGTTGTTCTTTCATTTGATCCAAAACCAATCAAGGGTGACTGGA
ATGGTGCTGGTGCACACGCCAACTACAGCACCAAGTCTATGAGGAATGAT
GGTGGAATTGATGTGATCAACAAGGCAATTGAAAAGTTGGGGAAACGCCC
CGGGGAACACATTGCTGCTTATGGAGAGGGCAACGAAAGAAGACTGACTG
GTCGACATGAAATTGCAGATATCAACACTTTCTCTTGGGGTGTTTCCTAA
TAAAGGTGCCTCCATTCACGTTTGGCCTTGACACCGCCAAAGATGGAAAA
GGAATACTCTTTAAGAACAACGGCCCCCCTTATACACAAACCCATTTGCT
GTGAATTTCTATAATCCTTAACACCTTCTTACTGCGGTACCCATTACATA
AAACGGTGATCTGTTACAAAGATACAAAAACACAGTAAATGGTAACTCTC
TATATCACCCCACTCACTAACAGATCCCACGTCTCCAACTATAACCGAAT
CCTTACGCAAATGCTACAATTAAATTCACTACGTTTAATTTTATATCTCC
TATCTTATCACTATTACCTAACTTACCCCTCCTCGTCCTCCAATCCCCAA
ACCTATTTACCCCTTCCCGG
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