DY259971

Overview
NameDY259971
Unique NameDY259971
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length920
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA2_CHLRE (Glutamine synthetase, chloroplastic OS=Chlamydomonas reinhardtii GN=GLN2 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.410e-43
Identity = 81/148 (54.73%), Postives = 109/148 (73.65%), Query Frame = 2
Query:  107 ADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIK-GDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            A+ A GR +  +H +AC+ AG+ ISGIN EVMPGQWE+Q+GP   ++ GD++ ++R++L R+ E  G+V +F+PKP++ GDWNG GAH N+STK MR  GG+ VI +A+EKL K   EHI  YG GNE RLTG+HE  DINTF  GV+
Sbjct:  188 AESAFGRPLAEAHMEACMKAGLVISGINAEVMPGQWEYQIGPVGPLALGDEVMLSRWLLHRLGEDFGIVSTFNPKPVRTGDWNGTGAHTNFSTKGMRVPGGMKVIEEAVEKLSKTHIEHITQYGIGNEARLTGKHETCDINTFKHGVA 335          
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA_MIMIV (Putative glutamine synthetase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R565 PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.871e-41
Identity = 85/186 (45.70%), Postives = 117/186 (62.90%), Query Frame = 2
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS**RC 559
            +E  Y + +KD N P+                   +  A GR I + H +ACLYAGI ISG N EV PGQ EFQ+GP  GI + DQLW+AR+ILE+I+E     + + PKP++GDWNG+G H N+ST+SMR++GG+ VI +A++KL  +  EH+  YG  N+ RLTG HE A I+ FS G+   +C
Sbjct:  129 LEQEYFIFRKDTNQPIGMEYASKQGQYYCSVG---SQNAYGRRISDEHMEACLYAGIKISGTNLEVAPGQHEFQIGPVEGIDAADQLWIARFILEKISEHYDRYIVYHPKPLQGDWNGSGCHTNFSTESMRSEGGLTVIMEAVDKLRTKHSEHMKVYGIDNDLRLTGDHETASIDEFSHGIGSRQC 311          
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA2_STRVR (Glutamine synthetase 2 OS=Streptomyces viridochromogenes GN=glnII PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 2.288e-39
Identity = 88/184 (47.83%), Postives = 108/184 (58.70%), Query Frame = 2
Query:    2 IEPLYTLLQKDINWPLXXXXXXXXXXXXXXXXXXXADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGK--RPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            IE  YT  Q    +PL                   AD+  GRD+V +H   CL AG+ ISGIN EVMPGQWEFQVGP   +   D LW+AR++L R  E   V  + DPKP+KGDWNGAGAH N+STK+MR     D I  A E LG+  +P +H+  YG G + RLTG HE A  N +S+GVS
Sbjct:  112 IEQEYTFFQD--GYPLGFPKGGFPAPQGGYYCGVGADEIFGRDVVEAHLDNCLKAGLAISGINAEVMPGQWEFQVGPVSPLEVSDHLWVARWLLYRTAEDFDVAATLDPKPVKGDWNGAGAHTNFSTKAMRE--SYDAIITAAESLGEGSKPLDHVKNYGAGIDDRLTGLHETAPWNEYSYGVS 291          
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA2_STRHY (Glutamine synthetase 2 OS=Streptomyces hygroscopicus GN=glnB PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 7.359e-38
Identity = 79/149 (53.02%), Postives = 97/149 (65.10%), Query Frame = 2
Query:  107 ADKALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGK--RPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            AD   GR+IV  H   CL AG+ +SGIN EVMPGQWEFQVG    +   D +W+AR++L R+ E  GV  S D KP KGDWNGAGAH N+ST++MR   G D I  A E LG+  +P EH+  YG G E RLTG HE A  + +S+G S
Sbjct:  142 ADAIFGREIVEKHLDLCLAAGLGLSGINAEVMPGQWEFQVGALPPLEVSDHMWVARWLLHRVAEEFGVTASLDAKPAKGDWNGAGAHTNFSTRAMRE--GYDPIITACEALGQDDKPLEHVRQYGTGIEDRLTGAHETAPWDAYSYGAS 288          
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA2_FRAAL (Glutamine synthetase 2 OS=Frankia alni GN=glnII PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 1.063e-36
Identity = 78/145 (53.79%), Postives = 92/145 (63.45%), Query Frame = 2
Query:  113 KALGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            K  GR IV  H +ACL AG+ I G N EVM GQWEFQ+G     + GDQ+W+ R++L RI E  GV +SF  KPI GDWNGAGAH N+STK      G D I    E LG R  EH+  YG+G E RLTG+HE A  N +SWG S
Sbjct:  142 KMPGRQIVERHTQACLDAGLAIEGTNAEVMMGQWEFQIGVLPAPAIGDQIWLGRWLLHRIAEDYGVEVSFAAKPIPGDWNGAGAHTNFSTKQTME--GWDAIVTCCEALGTRVTEHVTHYGKGIEDRLTGKHETAPWNKYSWGAS 284          
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA2_RHILP (Glutamine synthetase 2 OS=Rhizobium leguminosarum bv. phaseoli GN=glnII PE=1 SV=3)

HSP 1 Score: 137.117 bits (344), Expect = 1.344e-31
Identity = 67/144 (46.53%), Postives = 90/144 (62.50%), Query Frame = 2
Query:  119 LGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPI-KGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            + R+IV  H   CL AGIN  GIN EV  GQWEFQ+       + DQ+WMARY+L+R+TE  G+ + +  KP+   DWNG+G H N+STK +R  GG +     +    K   +HIA YG  N++RLTG+HE A  N FS+GV+
Sbjct:  144 VAREIVEEHLDLCLAAGINHEGINAEVAKGQWEFQIFGKGSKKAADQIWMARYLLQRLTEKYGIDIEYHCKPLGDTDWNGSGMHCNFSTKYLREVGGKEYFEALMASSDKNLMDHIAVYGPDNDKRLTGKHETAPWNKFSYGVA 287          
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA2_BRAJA (Glutamine synthetase 2 OS=Bradyrhizobium japonicum GN=glnII PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 6.671e-31
Identity = 67/144 (46.53%), Postives = 89/144 (61.81%), Query Frame = 2
Query:  119 LGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPIKG-DWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            + R IV  H   CL AGIN  GIN EV  GQWEFQ+       + D++WMARY++ R+TE  G+ + F  KP+   DWNG+G HAN+ST+ MR  GG +     +    K   +HIA YG  N++RLTG+HE A  N FS+GV+
Sbjct:  147 VARKIVEEHLDLCLAAGINHEGINAEVAKGQWEFQIFGKGSKKAADEMWMARYLMLRLTEKYGIDIEFHCKPLGDTDWNGSGMHANFSTEYMRTVGGKEYFEALMAAFDKNLMDHIAVYGPDNDKRLTGKHETAPWNKFSYGVA 290          
BLAST of DY259971 vs. ExPASy Swiss-Prot
Match: GLNA2_RHIME (Glutamine synthetase 2 OS=Rhizobium meliloti GN=glnII PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.475e-27
Identity = 64/144 (44.44%), Postives = 84/144 (58.33%), Query Frame = 2
Query:  119 LGRDIVNSHYKACLYAGINISGINGEVMPGQWEFQVGPCVGISSGDQLWMARYILERITEIAGVVLSFDPKPI-KGDWNGAGAHANYSTKSMRNDGGIDVINKAIEKLGKRPGEHIAAYGEGNERRLTGRHEIADINTFSWGVS 547
            + R IV  H   CL AGIN  GIN EV  GQWEFQ+       + D++ +ARY+L R+TE  G+ + F  KP+   DWNG+G HAN+ST  +R  GG D     +    K   +HI  YG  N  RLTG+HE A  + FS+GV+
Sbjct:  147 VARQIVEEHLDICLAAGINHEGINAEVAKGQWEFQIFGKGSKKAADEVCVARYLLVRLTEKYGIDVEFHCKPLGDTDWNGSGMHANFSTAYLREVGGQDYFEALMAAFEKNLHDHINVYGPDNHLRLTGKHETAPWDKFSYGVA 290          
The following BLAST results are available for this feature:
BLAST of DY259971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA2_CHLRE3.410e-4354.73Glutamine synthetase, chloroplastic OS=Chlamydomon... [more]
GLNA_MIMIV1.871e-4145.70Putative glutamine synthetase OS=Acanthamoeba poly... [more]
GLNA2_STRVR2.288e-3947.83Glutamine synthetase 2 OS=Streptomyces viridochrom... [more]
GLNA2_STRHY7.359e-3853.02Glutamine synthetase 2 OS=Streptomyces hygroscopic... [more]
GLNA2_FRAAL1.063e-3653.79Glutamine synthetase 2 OS=Frankia alni GN=glnII PE... [more]
GLNA2_RHILP1.344e-3146.53Glutamine synthetase 2 OS=Rhizobium leguminosarum ... [more]
GLNA2_BRAJA6.671e-3146.53Glutamine synthetase 2 OS=Bradyrhizobium japonicum... [more]
GLNA2_RHIME4.475e-2744.44Glutamine synthetase 2 OS=Rhizobium meliloti GN=gl... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YM23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259971 ID=DY259971; Name=DY259971; organism=Citrus clementina; type=EST; length=920bp
CATTGAGCCCCTCTACACTCTTCTTCAAAAAGACATAAACTGGCCCTTGG
GGTGGCCAGTTGGCGGCTATCCTGGCCCTCAGGGACCTTACTACTGCGGT
GTTGGCGCTGATAAGGCTTTAGGCCGAGACATTGTGAATTCTCACTACAA
AGCTTGCCTTTACGCTGGAATTAACATCAGTGGCATTAACGGTGAAGTTA
TGCCGGGTCAGTGGGAATTCCAAGTGGGTCCCTGTGTGGGTATCTCTTCT
GGTGATCAGTTATGGATGGCTCGGTACATACTCGAGAGGATTACTGAAAT
TGCCGGAGTTGTTCTTTCATTTGATCCAAAACCAATCAAGGGTGACTGGA
ATGGTGCTGGTGCACACGCCAACTACAGCACCAAGTCTATGAGGAATGAT
GGTGGAATTGATGTGATCAACAAGGCAATTGAAAAGTTGGGGAAACGCCC
CGGGGAACACATTGCTGCTTATGGAGAGGGCAACGAAAGAAGACTGACTG
GTCGACATGAAATTGCAGATATCAACACTTTCTCTTGGGGTGTTTCCTAA
TAAAGGTGCCTCCATTCACGTTTGGCCTTGACACCGCCAAAGATGGAAAA
GGAATACTCTTTAAGAACAACGGCCCCCCTTATACACAAACCCATTTGCT
GTGAATTTCTATAATCCTTAACACCTTCTTACTGCGGTACCCATTACATA
AAACGGTGATCTGTTACAAAGATACAAAAACACAGTAAATGGTAACTCTC
TATATCACCCCACTCACTAACAGATCCCACGTCTCCAACTATAACCGAAT
CCTTACGCAAATGCTACAATTAAATTCACTACGTTTAATTTTATATCTCC
TATCTTATCACTATTACCTAACTTACCCCTCCTCGTCCTCCAATCCCCAA
ACCTATTTACCCCTTCCCGG
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